Variant report

Variant	nsv561634
Chromosome Location	chr13:51065836-51074693
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:9)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:20)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:9 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr13:51068926-51068942	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr13:51066171-51066200	Lung_OC	lung:	n/a	n/a
3	E2F4	chr13:51066794-51066832	MCF10A-Er-Src	breast:	n/a	n/a
4	JUND	chr13:51068432-51068493	K562	blood:	n/a	n/a
5	MAZ	chr13:51066308-51066416	HepG2	liver:	n/a	n/a
6	POLR2A	chr13:51065805-51065838	MCF10A-Er-Src	breast:	n/a	n/a
7	SPI1	chr13:51068268-51068591	HL-60	blood:	n/a	n/a
8	SPI1	chr13:51068156-51068803	HL-60	blood:	n/a	n/a
9	ZC3H11A	chr13:51068226-51068342	K562	blood:	n/a	n/a

No data

(count:20 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RNASEH2B-3	chr13:51066787-51066897	NONHSAT033819
2	lnc-RNASEH2B-3	chr13:51066787-51066897	NONHSAT033850
3	lnc-RNASEH2B-3	chr13:51066787-51066897	NR_109974
4	lnc-RNASEH2B-3	chr13:51066787-51066897	NONHSAT033817
5	lnc-RNASEH2B-3	chr13:51066787-51066897	NONHSAT140131
6	lnc-RNASEH2B-3	chr13:51066780-51066897	NONHSAT033861
7	lnc-RNASEH2B-3	chr13:51066787-51066897	XLOC_010390
8	lnc-RNASEH2B-3	chr13:51066787-51066897	XLOC_010390
9	lnc-RNASEH2B-3	chr13:51066787-51066897	NONHSAT033812
10	lnc-RNASEH2B-3	chr13:51066787-51066897	NONHSAT033815
11	lnc-RNASEH2B-3	chr13:51066787-51066897	XLOC_010390
12	lnc-RNASEH2B-3	chr13:51066787-51066897	NONHSAT033846
13	lnc-RNASEH2B-3	chr13:51067608-51067670	NONHSAT033856
14	lnc-RNASEH2B-3	chr13:51066787-51066897	NONHSAT033855
15	lnc-RNASEH2B-3	chr13:51066787-51067189	NONHSAT033842
16	lnc-RNASEH2B-3	chr13:51069312-51069605	NONHSAT033856
17	lnc-RNASEH2B-3	chr13:51066787-51066897	NONHSAT033856
18	lnc-RNASEH2B-3	chr13:51066787-51066897	NONHSAT033821
19	lnc-RNASEH2B-3	chr13:51066787-51066897	NONHSAT033827
20	lnc-RNASEH2B-3	chr13:51066787-51066897	NONHSAT033825

No data

Variant related genes	Relation type
DLEU1	TF binding region
NAGK	miRNA target sites

Extended variants
information (count: 138 )
Associated
traits (count: 123 )

Variant overlapped rSNPs/rCNVs (count:138 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201762	chr13:51065836-51065837	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs566398967	chr13:51065847-51065848	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs149889	chr13:51065854-51065855	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs142068046	chr13:51065870-51065871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs559826343	chr13:51065872-51065873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs530316191	chr13:51065909-51065910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs115374041	chr13:51065932-51065933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs530915330	chr13:51065965-51065966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs555028809	chr13:51065970-51065971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs987086	chr13:51065987-51065988	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs184522294	chr13:51065999-51066000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs199919750	chr13:51066006-51066007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs1262782	chr13:51066063-51066064	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs73184405	chr13:51066075-51066076	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs557214353	chr13:51066091-51066092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs534121162	chr13:51066119-51066120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs575461971	chr13:51066124-51066125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs145738853	chr13:51066148-51066149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs372964917	chr13:51066161-51066162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs5803515	chr13:51066162-51066163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs33990643	chr13:51066163-51066164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs1262781	chr13:51066171-51066172	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs138676961	chr13:51066182-51066183	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs189444862	chr13:51066227-51066228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs555309931	chr13:51066244-51066245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs574818536	chr13:51066262-51066263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs79306556	chr13:51066263-51066264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs528362416	chr13:51066309-51066310	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs563550133	chr13:51066314-51066315	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs531051655	chr13:51066368-51066369	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs191852684	chr13:51066377-51066378	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs73502137	chr13:51066389-51066390	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs574006811	chr13:51066443-51066444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs543032583	chr13:51066472-51066473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs528568355	chr13:51066485-51066486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs546693665	chr13:51066529-51066530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs568435821	chr13:51066577-51066578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs529202918	chr13:51066584-51066585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs550850003	chr13:51066588-51066589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs1262780	chr13:51066592-51066593	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs1262779	chr13:51066604-51066605	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs1262778	chr13:51066623-51066624	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	disease
43	rs566462221	chr13:51066629-51066630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs113452989	chr13:51066645-51066646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs564370060	chr13:51066646-51066647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs184277713	chr13:51066663-51066664	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs573261619	chr13:51066668-51066669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs543795559	chr13:51066685-51066686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs149254359	chr13:51066686-51066687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs1262777	chr13:51066734-51066735	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:123)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	16774939	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Trisomy	24170809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	19242612	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	17245344	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Retinoblastoma	21504564	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Mental retardation	17502991	CNVD
Retinoblastoma	17502991	CNVD
Bipolar disorder	18458673	CNVD
Liposarcoma	21253554	CNVD
T-cell lymphomas	19863542	CNVD
Cervical cancer	21062161	CNVD
microdeletion syndrome	19284877	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	17053054	CNVD
Multiple myeloma	19135901	CNVD
Autism	18414403	CNVD
Neurocytoma	17123091	CNVD
Central neurocytomas	17123091	CNVD
Prostate cancer	16461572	CNVD
Merkel cell carcinoma	19020549	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
lymphocytic leukemia	21291569	CNVD
Multiple myeloma	17550852	CNVD
Glioblastoma multiforme	19435819	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21858162	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute myeloid leukemia	17237825	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Myelofibrosis	22110671	CNVD
Hereditary prostate cancer	22028916	CNVD
Glioblastoma multiforme	22286061	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Prostate cancer	17217626	CNVD
Ovarian cancer	21781307	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Glioblastoma multiforme	21922591	CNVD
Metanephric adenoma	20802469	CNVD
Sezary syndrome	18413736	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21990379	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Gastric cancer	17908304	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51065600-51068600	Weak transcription	HepG2	liver
2	chr13:51067200-51068000	Enhancers	Dnd41	blood
3	chr13:51067600-51069400	Enhancers	Fetal Thymus	thymus
4	chr13:51067800-51068000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:51067800-51068200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr13:51067800-51068400	Enhancers	K562	blood
7	chr13:51067800-51069000	Enhancers	Primary hematopoietic stem cells	blood
8	chr13:51067800-51069200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr13:51067800-51069200	Enhancers	Thymus	Thymus
10	chr13:51068000-51068200	Flanking Active TSS	Dnd41	blood
11	chr13:51068000-51068600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr13:51068000-51068600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:51068000-51069200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr13:51068000-51069400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr13:51068200-51068400	Enhancers	Dnd41	blood
16	chr13:51068200-51068800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr13:51068200-51069200	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr13:51068200-51069200	Enhancers	Primary T cells from cord blood	blood
19	chr13:51068400-51068600	Flanking Active TSS	Dnd41	blood
20	chr13:51068400-51068800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr13:51068600-51070000	Enhancers	Dnd41	blood
22	chr13:51069000-51069400	Enhancers	Adipose Nuclei	Adipose

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