Variant report
| Variant | nsv562066 |
|---|---|
| Chromosome Location | chr13:65343923-65353382 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-AL445989.1-22 | chr13:65349990-65350330 | l_866_chr13:65338173-65350330_testes |
| 2 | lnc-AL445989.1-22 | chr13:65349990-65350352 | NONHSAT034192 |
| 3 | lnc-AL445989.1-22 | chr13:65347836-65347902 | l_866_chr13:65338173-65350330_testes |
| 4 | lnc-AL445989.1-22 | chr13:65347840-65347902 | NONHSAT034192 |
| No data |
| No data |
| No data |
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs372888423 | chr13:65343966-65343967 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs146257932 | chr13:65343967-65343968 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs528312945 | chr13:65343968-65343969 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs28380033 | chr13:65343969-65343970 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs138915201 | chr13:65343973-65343974 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs571570893 | chr13:65344013-65344014 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs141276254 | chr13:65344075-65344076 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs530889959 | chr13:65344088-65344089 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs150766552 | chr13:65344093-65344094 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs182442067 | chr13:65344120-65344121 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs547796685 | chr13:65344121-65344122 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs139134161 | chr13:65344131-65344132 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs546812132 | chr13:65344138-65344139 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs7336639 | chr13:65344178-65344179 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs547928874 | chr13:65347841-65347842 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 16 | rs140915907 | chr13:65347898-65347899 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 17 | rs545308808 | chr13:65350061-65350062 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 18 | rs145459053 | chr13:65350113-65350114 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 19 | rs577601917 | chr13:65350129-65350130 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 20 | rs543471904 | chr13:65350130-65350131 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 21 | rs189154664 | chr13:65350152-65350153 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 22 | rs563239194 | chr13:65350196-65350197 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 23 | rs181494650 | chr13:65350240-65350241 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 24 | rs79282598 | chr13:65350293-65350294 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 25 | rs186543086 | chr13:65350301-65350302 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 26 | rs151019144 | chr13:65351208-65351209 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs187933069 | chr13:65351250-65351251 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs193242459 | chr13:65351326-65351327 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 29 | rs34782093 | chr13:65351347-65351348 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 30 | rs138557569 | chr13:65351349-65351350 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 31 | rs71103162 | chr13:65351369-65351370 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 32 | rs76860154 | chr13:65351370-65351371 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 33 | rs537350897 | chr13:65351371-65351372 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 34 | rs140842935 | chr13:65351372-65351373 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 35 | rs141093404 | chr13:65351398-65351399 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 36 | rs530113027 | chr13:65351413-65351414 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 37 | rs546725383 | chr13:65351429-65351430 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 38 | rs116255226 | chr13:65351462-65351463 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 39 | rs144855295 | chr13:65351537-65351538 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 40 | rs552794382 | chr13:65351590-65351591 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 41 | rs569440124 | chr13:65351630-65351631 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 42 | rs555762985 | chr13:65351654-65351655 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 43 | rs373315342 | chr13:65351666-65351667 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 44 | rs558207957 | chr13:65351667-65351668 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 45 | rs201625260 | chr13:65351673-65351674 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 46 | rs146727873 | chr13:65351784-65351785 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 47 | rs140316598 | chr13:65351790-65351791 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 48 | rs574104036 | chr13:65351812-65351813 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 49 | rs567302453 | chr13:65351823-65351824 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 50 | rs185398449 | chr13:65351837-65351838 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:93)
| Disease | PMID | Source |
|---|---|---|
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| HIV/AIDS | 22032296 | CNVD |
| Prostate cancer | 16705090 | CNVD |
| High-proliferative meningiomas | 17937814 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Cancer | 20164919 | CNVD |
| Autism | 22495311 | CNVD |
| Chordoma | 21602918 | CNVD |
| Bladder cancer | 21949216 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Burkitt''s lymphoma | 18698080 | CNVD |
| Cancer | 21637783 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Chronic lymphocytic leukemia | 21518781 | CNVD |
| colon cancer | 17210682 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Ovarian cancer | 20844748 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Intracranial aneurysm | 19064780 | CNVD |
| Breast cancer | 19287154 | CNVD |
| Acute myeloid leukemia | 18379011 | CNVD |
| Human rectal carcinomas | 16397240 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Multiple myeloma | 17077331 | CNVD |
| Ependymoma | 16718352 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Squamous cell cancer | 20885788 | CNVD |
| Myeloproliferative neoplasm | 20015882 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Neuroblastoma | 18923191 | CNVD |
| Ovarian cancer | 22174824 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Myoepithelioma | 18604193 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Acute lymphoblastic leukemia | 21098271 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Paraganglioma | 21461997 | CNVD |
| Pheochromocytoma | 21461997 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Prostate cancer | 17245344 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Colorectal cancer | 21586687 | CNVD |
| Small bowel adenocarcinoma | 21586687 | CNVD |
| Retinoblastoma | 19183342 | CNVD |
| Developmental delay | 21147756 | CNVD |
| Melanoma | 18172304 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Merkel cell carcinoma | 19020549 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Glioblastoma multiforme | 21922591 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Glioblastoma multiforme | 21750150 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Cancer | 21183584 | CNVD |
| Breast cancer | 17393978 | CNVD |
| Splenic marginal zone lymphoma | 18492102 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Gastrointestinal stromal cancer | 20818650 | CNVD |
| head and neck squamous cell carcinoma | 17671120 | CNVD |
| Colorectal cancer | 16774939 | CNVD |
| Adenoid cystic carcinoma | 17372589 | CNVD |
| abnormal development | 18461090 | CNVD |
| Acute promyelocytic leukemia | 19109227 | CNVD |
| Chronic lymphocytic leukemia | 20421269 | CNVD |
| Acute lymphoblastic leukemia | 21980252 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:65343400-65344200 | Enhancers | HUVEC | blood vessel |
| 2 | chr13:65351200-65353200 | Enhancers | HUVEC | blood vessel |
| 3 | chr13:65352200-65352600 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
