Variant report

Variant	nsv564264
Chromosome Location	chr14:35482797-35732369
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3205)
CpG islands
(count:1712)
Chromatin interactive
region (count:305)
LncRNA
region (count:29)
Mature miRNA
region (count: 0)
miRNA target
sites (count:6)

(count:3205 , 50 per page) page: 1 2 3 4 5 6 7 ... 65

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr14:35628114-35628276	HepG2	liver:	n/a	n/a
2	ARID3A	chr14:35514746-35515759	HepG2	liver:	n/a	n/a
3	ARID3A	chr14:35509539-35510010	HepG2	liver:	n/a	chr14:35509792-35509808
4	ARID3A	chr14:35591026-35591699	K562	blood:	n/a	chr14:35591480-35591488
5	ARID3A	chr14:35521017-35521344	HepG2	liver:	n/a	n/a
6	ARID3A	chr14:35698749-35699034	HepG2	liver:	n/a	n/a
7	ARID3A	chr14:35682775-35683608	HepG2	liver:	n/a	n/a
8	ARID3A	chr14:35658657-35659080	HepG2	liver:	n/a	n/a
9	ARID3A	chr14:35590633-35592472	HepG2	liver:	n/a	chr14:35591480-35591488
10	ARID3A	chr14:35519876-35520224	K562	blood:	n/a	n/a
11	ARID3A	chr14:35609838-35610282	HepG2	liver:	n/a	n/a
12	ARID3A	chr14:35519909-35520120	HepG2	liver:	n/a	n/a
13	ARID3A	chr14:35613218-35613555	HepG2	liver:	n/a	n/a
14	ARID3A	chr14:35516133-35516303	HepG2	liver:	n/a	n/a
15	ARID3A	chr14:35628515-35629631	HepG2	liver:	n/a	n/a
16	ARID3A	chr14:35615869-35616033	HepG2	liver:	n/a	n/a
17	ARID3A	chr14:35537558-35537700	HepG2	liver:	n/a	n/a
18	ARID3A	chr14:35547257-35547542	HepG2	liver:	n/a	n/a
19	ATF1	chr14:35727736-35727930	K562	blood:	n/a	n/a
20	ATF1	chr14:35515122-35515876	K562	blood:	n/a	n/a
21	ATF1	chr14:35517147-35517386	K562	blood:	n/a	n/a
22	ATF1	chr14:35590856-35592000	K562	blood:	n/a	n/a
23	ATF1	chr14:35519862-35520172	K562	blood:	n/a	n/a
24	ATF1	chr14:35629215-35629517	K562	blood:	n/a	n/a
25	ATF2	chr14:35590769-35591863	H1-hESC	embryonic stem cell:	n/a	n/a
26	ATF2	chr14:35591095-35591822	GM12878	blood:	n/a	n/a
27	ATF2	chr14:35504149-35504484	GM12878	blood:	n/a	n/a
28	ATF2	chr14:35515054-35515466	GM12878	blood:	n/a	n/a
29	ATF2	chr14:35515000-35515488	H1-hESC	embryonic stem cell:	n/a	n/a
30	ATF2	chr14:35590456-35592108	GM12878	blood:	n/a	n/a
31	ATF2	chr14:35514853-35515586	GM12878	blood:	n/a	n/a
32	ATF2	chr14:35723934-35724302	GM12878	blood:	n/a	n/a
33	ATF2	chr14:35590839-35591575	H1-hESC	embryonic stem cell:	n/a	n/a
34	ATF2	chr14:35515153-35515540	H1-hESC	embryonic stem cell:	n/a	n/a
35	ATF3	chr14:35515137-35515513	K562	blood:	n/a	chr14:35515349-35515364 chr14:35515353-35515360 chr14:35515353-35515361 chr14:35515353-35515363 chr14:35515352-35515360 chr14:35515350-35515363 chr14:35515353-35515363
36	ATF3	chr14:35591305-35591773	H1-hESC	embryonic stem cell:	n/a	chr14:35591484-35591504
37	ATF3	chr14:35591062-35591829	GM12878	blood:	n/a	chr14:35591484-35591504
38	ATF3	chr14:35591069-35591891	HepG2	liver:	n/a	chr14:35591484-35591504
39	ATF3	chr14:35591254-35591787	A549	lung:	n/a	chr14:35591484-35591504
40	ATF3	chr14:35629129-35629373	K562	blood:	n/a	n/a
41	ATF3	chr14:35591326-35591632	K562	blood:	n/a	chr14:35591484-35591504
42	ATF3	chr14:35591368-35591602	GM12878	blood:	n/a	chr14:35591484-35591504
43	ATF3	chr14:35590988-35592153	HepG2	liver:	n/a	chr14:35591484-35591504
44	BACH1	chr14:35519638-35520190	K562	blood:	n/a	chr14:35520008-35520022
45	BACH1	chr14:35515145-35516116	H1-hESC	embryonic stem cell:	n/a	n/a
46	BACH1	chr14:35519875-35520207	H1-hESC	embryonic stem cell:	n/a	chr14:35520008-35520022
47	BACH1	chr14:35705679-35705717	H1-hESC	embryonic stem cell:	n/a	n/a
48	BATF	chr14:35504189-35504612	GM12878	blood:	n/a	chr14:35504383-35504394
49	BATF	chr14:35591663-35591964	GM12878	blood:	n/a	n/a
50	BATF	chr14:35654077-35654389	GM12878	blood:	n/a	n/a

(count:1712 , 50 per page) page: 1 2 3 4 5 6 7 ... 35

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:35591523-35591573	AG04450	lung:	fetal
2	chr14:35587750-35587800	Hepatocyte	liver:	n/a
3	chr14:35591473-35591523	HL-60	blood:	n/a
4	chr14:35591951-35592001	SK-N-MC	brain:	n/a
5	chr14:35591523-35591573	AG04450	lung:	fetal
6	chr14:35587750-35587800	Hepatocyte	liver:	n/a
7	chr14:35591473-35591523	HL-60	blood:	n/a
8	chr14:35591951-35592001	SK-N-MC	brain:	n/a
9	chr14:35515116-35515166	SKMC	muscle:	n/a
10	chr14:35591695-35591745	GM19239	blood:	n/a
11	chr14:35629311-35629361	HRE	kidney:	n/a
12	chr14:35591779-35591829	HCPEpiC	choroid plexus:	n/a
13	chr14:35498490-35498540	MCF-7	breast:	n/a
14	chr14:35540926-35540976	NHBE	bronchial:	n/a
15	chr14:35512367-35512417	NT2-D1	testis:	n/a
16	chr14:35589334-35589384	H1-hESC	embryonic stem cell:	embryo
17	chr14:35587750-35587800	GM12878	blood:	n/a
18	chr14:35512367-35512417	SK-N-MC	brain:	n/a
19	chr14:35592116-35592166	HL-60	blood:	n/a
20	chr14:35594356-35594406	HRPEpiC	eye:	n/a
21	chr14:35495536-35495586	Caco-2	colon:	n/a
22	chr14:35594356-35594406	AoSMC	blood vessel:	n/a
23	chr14:35591779-35591829	AG10803	skin:	n/a
24	chr14:35591781-35591831	K562	blood:	n/a
25	chr14:35591625-35591675	HRCEpiC	kidney:	n/a
26	chr14:35594356-35594406	U87	brain:	n/a
27	chr14:35540926-35540976	HepG2	liver:	n/a
28	chr14:35583718-35583768	HEEpiC	esophagus:	n/a
29	chr14:35591625-35591675	HNPCEpiC	eye:	n/a
30	chr14:35594356-35594406	AG09319	gingival:	n/a
31	chr14:35495536-35495586	AG09309	skin:	n/a
32	chr14:35629311-35629361	MCF10A-Er-Src	breast:	n/a
33	chr14:35591840-35591890	SK-N-MC	brain:	n/a
34	chr14:35514333-35514383	GM06990	blood:	n/a
35	chr14:35591252-35591302	H1-hESC	embryonic stem cell:	embryo
36	chr14:35629311-35629361	H1-hESC	embryonic stem cell:	embryo
37	chr14:35591252-35591302	PrEC	prostate:	n/a
38	chr14:35591951-35592001	HRCEpiC	kidney:	n/a
39	chr14:35591781-35591831	SKMC	muscle:	n/a
40	chr14:35583718-35583768	BE2_C	brain:	n/a
41	chr14:35591781-35591831	HRPEpiC	eye:	n/a
42	chr14:35514333-35514383	A549	lung:	n/a
43	chr14:35591695-35591745	HEEpiC	esophagus:	n/a
44	chr14:35629311-35629361	HRPEpiC	eye:	n/a
45	chr14:35515858-35515908	SK-N-SH	brain:	n/a
46	chr14:35594356-35594406	T-47D	breast:	n/a
47	chr14:35591840-35591890	HNPCEpiC	eye:	n/a
48	chr14:35587750-35587800	A549	lung:	n/a
49	chr14:35683834-35683884	PFSK-1	brain:	n/a
50	chr14:35516283-35516333	ovcar-3	ovarian:	n/a

(count:305 , 50 per page) page: 1 2 3 4 5 6 7

No.	Distal block	Cell Line	Cell type
1	chr14:35628567..35630693-chr14:35872213..35874122,2	MCF-7	breast:
2	chr14:35716423..35718490-chr14:35802705..35806298,3	MCF-7	breast:
3	chr14:35481674..35484183-chr14:35515641..35517435,2	MCF-7	breast:
4	chr14:35706016..35708901-chr14:35873653..35875984,5	MCF-7	breast:
5	chr14:35729441..35731228-chr14:35801270..35803079,2	MCF-7	breast:
6	chr14:35698279..35702159-chr14:35801289..35806332,5	MCF-7	breast:
7	chr14:35450596..35455465-chr14:35514082..35520003,7	MCF-7	breast:
8	chr14:35689551..35692151-chr14:35760450..35762726,3	MCF-7	breast:
9	chr14:35669178..35671456-chr14:35674272..35676613,2	MCF-7	breast:
10	chr14:35698439..35699139-chr14:35882158..35883164,4	MCF-7	breast:
11	chr14:35705470..35707557-chr14:35709197..35711039,2	K562	blood:
12	chr14:35665653..35667827-chr14:35670189..35673146,2	K562	blood:
13	chr14:35577086..35580056-chr14:35580213..35583818,4	MCF-7	breast:
14	chr14:35680464..35682083-chr14:35684601..35686665,2	MCF-7	breast:
15	chr14:35516520..35518836-chr14:35536161..35537991,2	K562	blood:
16	chr14:35726193..35729165-chr14:35868329..35870557,3	MCF-7	breast:
17	chr14:35589827..35591407-chr14:35592886..35594751,2	K562	blood:
18	chr14:35634398..35636898-chr14:35641045..35642555,2	K562	blood:
19	chr14:35701265..35703150-chr14:35798175..35799719,2	MCF-7	breast:
20	chr14:35481674..35484183-chr14:35515641..35517435,2	MCF-7	breast:
21	chr14:35583281..35585103-chr14:35589464..35591782,2	K562	blood:
22	chr14:35450146..35454994-chr14:35588530..35593322,8	MCF-7	breast:
23	chr14:35610882..35612765-chr14:35874078..35876845,2	MCF-7	breast:
24	chr14:35507467..35509940-chr14:35513836..35516152,2	MCF-7	breast:
25	chr14:35664498..35666606-chr14:35871768..35874425,2	MCF-7	breast:
26	chr14:35560221..35562617-chr14:35563701..35566461,3	MCF-7	breast:
27	chr14:35500095..35502926-chr14:35557815..35560264,2	MCF-7	breast:
28	chr14:35591658..35595888-chr14:35872338..35875561,5	K562	blood:
29	chr14:35542856..35545379-chr14:35545884..35547837,2	K562	blood:
30	chr14:35580705..35582732-chr14:35589834..35592713,2	K562	blood:
31	chr14:35460081..35462987-chr14:35513991..35516983,2	MCF-7	breast:
32	chr14:35618961..35620951-chr14:35872636..35874969,2	K562	blood:
33	chr14:35711268..35715087-chr14:35870152..35873955,3	MCF-7	breast:
34	chr14:35727315..35730238-chr14:35866086..35867678,2	MCF-7	breast:
35	chr14:35583719..35588379-chr14:35588655..35591956,6	MCF-7	breast:
36	chr14:35590489..35591401-chr15:91445904..91446665,2	Hela-S3	cervix:
37	chr14:35688326..35690057-chr14:35697484..35700212,2	MCF-7	breast:
38	chr14:35705470..35707557-chr14:35709197..35711039,2	K562	blood:
39	chr14:35694745..35697043-chr14:35701937..35704486,2	MCF-7	breast:
40	chr14:35519616..35521249-chr14:35528506..35531084,2	MCF-7	breast:
41	chr14:35509776..35510382-chr14:35602542..35603513,2	MCF-7	breast:
42	chr14:35730609..35736672-chr14:35871862..35876542,13	MCF-7	breast:
43	chr14:35698728..35701038-chr14:35871807..35874064,2	K562	blood:
44	chr14:35705860..35707392-chr14:35712096..35713861,2	MCF-7	breast:
45	chr14:35593860..35596443-chr14:35605517..35607732,2	MCF-7	breast:
46	chr14:35525027..35526542-chr14:35529643..35531640,2	K562	blood:
47	chr14:35513731..35517214-chr14:35589119..35593617,5	MCF-7	breast:
48	chr14:35515793..35518719-chr14:35585868..35588915,3	K562	blood:
49	chr14:35565651..35568101-chr14:35571541..35574493,2	K562	blood:
50	chr14:35714388..35715903-chr14:35719645..35721798,2	MCF-7	breast:

(count:29 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PPP2R3C-4	chr14:35715251-35715712	l_962_chr14:35668508-35676460_thyroid
2	lnc-RP11-173D9.3.1-3	chr14:35700900-35700969	l_963_chr14:35700899-35775195_brain
3	lnc-FAM177A1-2	chr14:35487835-35487971	NONHSAT036358
4	lnc-PPP2R3C-4	chr14:35693328-35695629	l_962_chr14:35668508-35676460_thyroid
5	lnc-BAZ1A-3	chr14:35579129-35579835	NONHSAT036363
6	lnc-PPP2R3C-1	chr14:35613227-35613686	NONHSAT036366
7	lnc-FAM177A1-4	chr14:35651558-35651951	uc_373_+
8	lnc-RP11-173D9.3.1-1	chr14:35579101-35579166	ENSG00000247658
9	lnc-PPP2R3C-4	chr14:35714373-35714399	l_962_chr14:35668508-35676460_thyroid
10	lnc-PPP2R3C-4	chr14:35691819-35692693	l_962_chr14:35668508-35676460_thyroid
11	lnc-PPP2R3C-4	chr14:35701581-35701640	l_962_chr14:35668508-35676460_thyroid
12	lnc-RP11-173D9.3.1-1	chr14:35568882-35571935	ENSG00000247658
13	lnc-PPP2R3C-4	chr14:35668509-35676125	l_962_chr14:35668508-35676460_thyroid
14	lnc-RP11-173D9.3.1-1	chr14:35575573-35575690	ENSG00000247658
15	lnc-PPP2R3C-4	chr14:35704130-35704256	l_962_chr14:35668508-35676460_thyroid
16	lnc-PPP2R3C-4	chr14:35676137-35676460	l_962_chr14:35668508-35676460_thyroid
17	lnc-RP11-173D9.3.1-3	chr14:35703077-35703223	l_963_chr14:35700899-35775195_brain
18	lnc-RP11-173D9.3.1-3	chr14:35704702-35704801	l_963_chr14:35700899-35775195_brain
19	lnc-PPP2R3C-4	chr14:35692695-35692853	l_962_chr14:35668508-35676460_thyroid
20	lnc-RP11-173D9.3.1-3	chr14:35704074-35704252	l_963_chr14:35700899-35775195_brain
21	lnc-RP11-173D9.3.1-1	chr14:35579776-35579932	ENSG00000247658
22	lnc-FAM177A1-2	chr14:35488172-35488564	NONHSAT036358
23	lnc-PPP2R3C-4	chr14:35704706-35704801	l_962_chr14:35668508-35676460_thyroid
24	lnc-PPP2R3C-3	chr14:35651558-35651951	uc_373_-
25	lnc-PPP2R3C-2	chr14:35627110-35628305	NONHSAT036367
26	lnc-PPP2R3C-4	chr14:35690827-35691028	l_962_chr14:35668508-35676460_thyroid
27	lnc-BAZ1A-3	chr14:35591108-35591185	NONHSAT036363
28	lnc-BAZ1A-3	chr14:35585816-35585943	NONHSAT036363
29	lnc-PPP2R3C-4	chr14:35704820-35705215	l_962_chr14:35668508-35676460_thyroid

No data

(count:6 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	FAM177A1	hsa-miR-124-3p	chr14:35552521-35552538
2	FAM177A1	hsa-miR-124-3p	chr14:35552531-35552538
3	FAM177A1	hsa-miR-142-3p	chr14:35551080-35551101
4	FAM177A1	hsa-miR-186-5p	chr14:35550483-35550504
5	FAM177A1	hsa-miR-186-5p	chr14:35551034-35551055
6	FAM177A1	hsa-miR-155-5p	chr14:35551927-35551947

Variant related genes	Relation type
KIAA0391	TF binding region
ENSG00000258790	TF binding region
PPP2R3C	TF binding region
ENSG00000241052	TF binding region
RPL7AP3	TF binding region
ENSG00000259090	TF binding region
RPL9P3	TF binding region
SRP54	TF binding region
FAM177A1	TF binding region
KIAA0391	CpG island
ENSG00000258790	CpG island
PPP2R3C	CpG island
ENSG00000241052	CpG island
RPL7AP3	CpG island
ENSG00000259090	CpG island
RPL9P3	CpG island
SRP54	CpG island
FAM177A1	CpG island
ENSG00000066135	chromatin interactions
ENSG00000258738	chromatin interactions
ENSG00000251562	chromatin interactions
ENSG00000168246	chromatin interactions
ENSG00000185634	chromatin interactions
ENSG00000008130	chromatin interactions
ENSG00000092020	chromatin interactions
ENSG00000100902	chromatin interactions
ENSG00000200156	chromatin interactions
ENSG00000258790	chromatin interactions
ENSG00000259090	chromatin interactions
ENSG00000200169	chromatin interactions
ENSG00000256243	chromatin interactions
ENSG00000094916	chromatin interactions
ENSG00000141376	chromatin interactions
ENSG00000196547	chromatin interactions
ENSG00000129518	chromatin interactions
ENSG00000146834	chromatin interactions
ENSG00000258704	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000100883	chromatin interactions
ENSG00000198604	chromatin interactions
ENSG00000165752	chromatin interactions
ENSG00000255302	chromatin interactions
ENSG00000058262	chromatin interactions
ENSG00000265530	chromatin interactions
ENSG00000235883	chromatin interactions
ENSG00000078487	chromatin interactions
ENSG00000115275	chromatin interactions
ENSG00000240392	chromatin interactions
ENSG00000185347	chromatin interactions
ENSG00000151327	chromatin interactions
ENSG00000100906	chromatin interactions
ENSG00000118454	chromatin interactions
ENSG00000153066	chromatin interactions
ENSG00000174851	chromatin interactions
ENSG00000100890	chromatin interactions
NEFM	miRNA target sites
FNDC3A	miRNA target sites
C2CD4A	miRNA target sites
SAMD4B	miRNA target sites

Extended variants
information (count: 9485 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:9485 , 50 per page) page: 1 2 3 4 5 6 7 ... 190

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2383692	chr14:35482797-35482798	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs142392981	chr14:35482801-35482802	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs376394002	chr14:35482802-35482803	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs563992521	chr14:35482809-35482810	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs533071849	chr14:35482818-35482819	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs150224180	chr14:35482824-35482825	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs190612441	chr14:35482842-35482843	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs113835670	chr14:35482859-35482860	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs181726706	chr14:35482927-35482928	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs138683658	chr14:35482931-35482932	Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs186795355	chr14:35482950-35482951	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs77255477	chr14:35482953-35482954	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs371291930	chr14:35482960-35482961	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs571600966	chr14:35482965-35482966	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs202171385	chr14:35482987-35482988	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs370066607	chr14:35483047-35483048	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs150290957	chr14:35483100-35483101	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs553738845	chr14:35483193-35483194	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs532534716	chr14:35483226-35483227	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs143818355	chr14:35483238-35483239	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs547606955	chr14:35483310-35483311	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs190162950	chr14:35483346-35483347	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs556472955	chr14:35483352-35483353	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs576690879	chr14:35483357-35483358	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs545243729	chr14:35483364-35483365	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs115618941	chr14:35483389-35483390	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs577626061	chr14:35483428-35483429	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs540371926	chr14:35483457-35483458	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs558852778	chr14:35483491-35483492	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs570630401	chr14:35483492-35483493	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs199548535	chr14:35483493-35483494	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs200951349	chr14:35483494-35483495	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs376712278	chr14:35483496-35483497	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs11850217	chr14:35483505-35483506	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs35078449	chr14:35483530-35483531	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs112802362	chr14:35483544-35483545	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs528927072	chr14:35483576-35483577	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs10146699	chr14:35483577-35483578	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs562609584	chr14:35483629-35483630	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs569267810	chr14:35483660-35483661	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs376334843	chr14:35483661-35483662	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs370420389	chr14:35483667-35483668	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs569519819	chr14:35483674-35483675	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs11850252	chr14:35483683-35483684	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs551245264	chr14:35483756-35483757	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs537025426	chr14:35483866-35483867	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs13379372	chr14:35483882-35483883	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs142942641	chr14:35483894-35483895	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs146112089	chr14:35483907-35483908	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs373996325	chr14:35483912-35483913	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Colorectal cancer	16774939	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Chronic myeloid leukemia	20724749	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Wilms tumour	21544195	CNVD
Esophageal cancer	20955586	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Burkitt''s lymphoma	19759907	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21045282	CNVD
Cancer	21129771	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Lung cancer	17925434	CNVD
Colorectal cancer	16272173	CNVD
Glioma	24330732	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21858162	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
abnormal development	18461090	CNVD
Prostate cancer	21298110	CNVD
Metanephric adenoma	20802469	CNVD
Lung adenocarcinoma	17982442	CNVD
Cancer	20164920	CNVD

Chromatin state (count:6365 , 50 per page) page: 1 2 3 4 5 6 7 ... 128

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35453600-35485600	Weak transcription	HSMMtube	muscle
2	chr14:35453800-35499200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:35454400-35485200	Weak transcription	Esophagus	oesophagus
4	chr14:35454400-35509800	Weak transcription	Psoas Muscle	Psoas
5	chr14:35454800-35483600	Weak transcription	Small Intestine	intestine
6	chr14:35454800-35484800	Weak transcription	Fetal Brain Male	brain
7	chr14:35455200-35482800	Weak transcription	A549	lung
8	chr14:35455200-35487200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:35456400-35483400	Weak transcription	Pancreas	Pancrea
10	chr14:35465200-35500600	Strong transcription	HepG2	liver
11	chr14:35465600-35500200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:35465800-35489000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr14:35466000-35501400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:35466000-35503800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:35466200-35500600	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr14:35466400-35498200	Weak transcription	Spleen	Spleen
17	chr14:35466600-35502000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr14:35466800-35483600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:35466800-35502800	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr14:35467000-35496600	Weak transcription	K562	blood
21	chr14:35467400-35484800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:35467600-35503600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr14:35468600-35493600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:35468600-35501600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:35469000-35488000	Weak transcription	Colonic Mucosa	Colon
26	chr14:35469400-35484800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr14:35469600-35482800	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr14:35469600-35484600	Weak transcription	Fetal Heart	heart
29	chr14:35470200-35483000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr14:35470600-35502600	Strong transcription	Liver	Liver
31	chr14:35471200-35483200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr14:35471200-35486600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr14:35471800-35501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:35473400-35501800	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr14:35474200-35486600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr14:35474200-35501400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr14:35474400-35503400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr14:35474600-35484800	Weak transcription	Fetal Kidney	kidney
39	chr14:35474600-35487000	Weak transcription	NHEK	skin
40	chr14:35474800-35483400	Weak transcription	Thymus	Thymus
41	chr14:35474800-35484800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr14:35474800-35484800	Weak transcription	Right Ventricle	heart
43	chr14:35474800-35485600	Weak transcription	Brain Angular Gyrus	brain
44	chr14:35475000-35484200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr14:35475000-35484200	Weak transcription	Ovary	ovary
46	chr14:35475000-35495400	Weak transcription	Aorta	Aorta
47	chr14:35475800-35489400	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr14:35475800-35500200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr14:35475800-35503200	Strong transcription	Adipose Nuclei	Adipose
50	chr14:35476000-35489400	Strong transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links