Variant report

Variant	nsv564375
Chromosome Location	chr14:38135156-38139214
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:38137638..38140285-chr14:38157919..38160073,2	MCF-7	breast:
2	chr14:38050621..38053581-chr14:38135495..38137848,2	MCF-7	breast:
3	chr14:38056260..38058013-chr14:38136356..38140465,3	MCF-7	breast:
4	chr14:38137632..38140312-chr14:38141019..38143766,2	MCF-7	breast:
5	chr14:38060301..38063769-chr14:38137094..38139893,4	MCF-7	breast:
6	chr14:38139116..38141185-chr14:38142374..38143930,2	MCF-7	breast:
7	chr14:38135828..38138506-chr14:38180627..38182501,2	MCF-7	breast:
8	chr14:38060951..38065801-chr14:38133423..38140633,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000129514	chromatin interactions
ENSG00000139865	chromatin interactions

Extended variants
information (count: 150 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:150 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs144955774	chr14:38135172-38135173	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs184276448	chr14:38135183-38135184	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs566477060	chr14:38135198-38135199	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs138957031	chr14:38135270-38135271	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs189091731	chr14:38135271-38135272	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs553135179	chr14:38135278-38135279	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs177894	chr14:38135284-38135285	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs56272111	chr14:38135306-38135307	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs538078006	chr14:38135466-38135467	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs181857841	chr14:38135497-38135498	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs177895	chr14:38135498-38135499	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs539805724	chr14:38135545-38135546	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs553060127	chr14:38135588-38135589	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs186260827	chr14:38135599-38135600	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs375894817	chr14:38135642-38135643	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs78710429	chr14:38135651-38135652	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs75034746	chr14:38135652-38135653	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs397738502	chr14:38135667-38135668	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs372805830	chr14:38135739-38135740	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs148137190	chr14:38135753-38135754	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs188999519	chr14:38135769-38135770	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs555452431	chr14:38135776-38135777	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs374249834	chr14:38135782-38135783	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs368779821	chr14:38135866-38135867	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs575426799	chr14:38135872-38135873	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs180957561	chr14:38135902-38135903	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs564783672	chr14:38135920-38135921	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs186075610	chr14:38135945-38135946	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs142776106	chr14:38135973-38135974	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs67770262	chr14:38135985-38135986	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs528904534	chr14:38135998-38135999	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs549089068	chr14:38136023-38136024	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs147372137	chr14:38136029-38136030	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs562620085	chr14:38136031-38136032	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs191372505	chr14:38136060-38136061	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs551321168	chr14:38136134-38136135	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs571437228	chr14:38136147-38136148	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs556814763	chr14:38136172-38136173	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs533818869	chr14:38136174-38136175	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs375400664	chr14:38136182-38136183	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs547674088	chr14:38136199-38136200	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs566490197	chr14:38136237-38136238	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs535488178	chr14:38136257-38136258	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs77778513	chr14:38136318-38136319	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs139489610	chr14:38136356-38136357	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs538348260	chr14:38136402-38136403	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs558024198	chr14:38136423-38136424	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs177896	chr14:38136497-38136498	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs578141204	chr14:38136504-38136505	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs182821382	chr14:38136523-38136524	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Colorectal cancer	16774939	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Chronic myeloid leukemia	20724749	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Wilms tumour	21544195	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Burkitt''s lymphoma	19759907	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21785460	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
abnormal development	18461090	CNVD
Prostate cancer	21298110	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21858162	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Prostate cancer	21147910	CNVD
Thyroid cancer	19470727	CNVD
Oral squamous cell carcinoma	17134496	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38124800-38138200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:38125000-38137600	Weak transcription	NH-A	brain
3	chr14:38137600-38138000	Enhancers	NH-A	brain
4	chr14:38137600-38138600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr14:38137800-38138400	Enhancers	A549	lung
6	chr14:38138000-38138400	Enhancers	Hela-S3	cervix
7	chr14:38138200-38138400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:38138600-38148200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links