Variant report

Variant	nsv564410
Chromosome Location	chr14:38944821-39038281
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:38992976..38994987-chr14:38997172..38999955,2	MCF-7	breast:
2	chr14:38987319..38989773-chr14:39001205..39003532,2	MCF-7	breast:
3	chr14:38961025..38963997-chr14:38965600..38967943,2	MCF-7	breast:
4	chr14:38987319..38989773-chr14:39001205..39003532,2	MCF-7	breast:
5	chr14:38961025..38963997-chr14:38965600..38967943,2	MCF-7	breast:
6	chr14:38992976..38994987-chr14:38997172..38999955,2	MCF-7	breast:
7	chr14:39008171..39008691-chr2:31059867..31060387,2	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSTR1-6	chr14:39031210-39032466	l_972_chr14:39013725-39019303_testes
2	lnc-SSTR1-6	chr14:39018824-39019303	l_972_chr14:39013725-39019303_testes
3	lnc-SSTR1-6	chr14:39013726-39013910	l_972_chr14:39013725-39019303_testes
4	lnc-SSTR1-5	chr14:39009273-39009709	l_971_chr14:38971570-39013700_testes
5	lnc-SSTR1-6	chr14:39023972-39024247	l_972_chr14:39013725-39019303_testes
6	lnc-SSTR1-5	chr14:39013489-39013700	l_971_chr14:38971570-39013700_testes
7	lnc-SSTR1-5	chr14:38971571-38971630	l_971_chr14:38971570-39013700_testes
8	lnc-SSTR1-5	chr14:38973050-38973650	l_971_chr14:38971570-39013700_testes

No data

Extended variants
information (count: 3050 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:3050 , 50 per page) page: 1 2 3 4 5 6 7 ... 61

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs372914103	chr14:38946216-38946217	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs549041053	chr14:38946225-38946226	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs374275234	chr14:38946245-38946246	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs568946766	chr14:38946260-38946261	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs183730876	chr14:38946262-38946263	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs189040741	chr14:38946271-38946272	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs577717671	chr14:38946296-38946297	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs180992470	chr14:38946327-38946328	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs368191720	chr14:38946333-38946334	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs117480313	chr14:38946378-38946379	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs573755746	chr14:38946397-38946398	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs186168498	chr14:38946411-38946412	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs539860026	chr14:38946421-38946422	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs375295055	chr14:38946426-38946427	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs575292736	chr14:38946459-38946460	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs544301434	chr14:38946471-38946472	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs370352658	chr14:38946475-38946476	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs564135437	chr14:38946483-38946484	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs533193419	chr14:38946485-38946486	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs547256141	chr14:38946505-38946506	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs560649846	chr14:38946511-38946512	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs529613685	chr14:38946515-38946516	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs144441773	chr14:38946517-38946518	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs569483935	chr14:38946540-38946541	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs148390827	chr14:38946667-38946668	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs551550739	chr14:38946690-38946691	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs189882782	chr14:38946709-38946710	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs533577650	chr14:38946738-38946739	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs528388405	chr14:38946752-38946753	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs371948156	chr14:38946794-38946795	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs181547409	chr14:38946799-38946800	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs536555101	chr14:38946827-38946828	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs11848494	chr14:38946838-38946839	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs372668734	chr14:38946847-38946848	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs10130870	chr14:38946851-38946852	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs185973509	chr14:38946858-38946859	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs564274803	chr14:38946879-38946880	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs190827435	chr14:38946894-38946895	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs61214219	chr14:38946931-38946932	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs560551912	chr14:38946944-38946945	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs529522215	chr14:38946950-38946951	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs543310132	chr14:38946969-38946970	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs530328884	chr14:38947060-38947061	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs146507359	chr14:38947062-38947063	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs76791235	chr14:38947172-38947173	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs571333847	chr14:38947200-38947201	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs527394379	chr14:38947207-38947208	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs547035319	chr14:38947284-38947285	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs368128762	chr14:38947310-38947311	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs10144649	chr14:38947326-38947327	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Colorectal cancer	16774939	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Chronic myeloid leukemia	20724749	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Wilms tumour	21544195	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Burkitt''s lymphoma	19759907	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21785460	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
abnormal development	18461090	CNVD
Prostate cancer	21298110	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21858162	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Thyroid cancer	19470727	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cancer	20164919	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:168 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38946200-38949200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:38949200-38975200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:38950800-38952200	Enhancers	Hela-S3	cervix
4	chr14:38951000-38951600	Enhancers	NHLF	lung
5	chr14:38951200-38951600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:38951200-38951600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr14:38951200-38951600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:38951200-38951800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:38958200-38975600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:38965000-38966600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr14:38965200-38966600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr14:38971600-38972000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:38971600-38972000	Enhancers	NHDF-Ad	bronchial
14	chr14:38972000-38974400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:38974200-38975600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr14:38974400-38974600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr14:38974400-38975600	Enhancers	Fetal Brain Male	brain
18	chr14:38974400-38975800	Enhancers	Brain Germinal Matrix	brain
19	chr14:38974400-38976000	Enhancers	Ovary	ovary
20	chr14:38974600-38975000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:38974800-38975200	Enhancers	NHLF	lung
22	chr14:38975000-38975600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:38975000-38975600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:38975000-38975600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr14:38975000-38975800	Enhancers	Brain Angular Gyrus	brain
26	chr14:38975000-38975800	Enhancers	Fetal Brain Female	brain
27	chr14:38975000-38976400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr14:38975200-38975400	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr14:38975200-38975800	Enhancers	Psoas Muscle	Psoas
30	chr14:38975200-38976600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr14:38975400-38976200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr14:38975600-38975800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr14:38975600-38976800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:38975800-38976400	Weak transcription	Psoas Muscle	Psoas
35	chr14:38976000-38976600	Weak transcription	Ovary	ovary
36	chr14:38976200-38978200	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr14:38976400-38976600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr14:38976600-38976800	Enhancers	Ovary	ovary
39	chr14:38976600-38976800	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr14:38976600-38982200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr14:38976800-38977000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr14:38976800-38977800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr14:38977000-38977200	Enhancers	Psoas Muscle	Psoas
44	chr14:38977000-38977200	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr14:38982200-38982600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr14:38982600-38992000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr14:38988600-38989000	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr14:38989000-38991800	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr14:38989600-38990400	Active TSS	Liver	Liver
50	chr14:38990400-38990600	Enhancers	Liver	Liver

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