Variant report

Variant	nsv579425
Chromosome Location	chr19:36643695-36685753
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:699)
CpG islands
(count:244)
Chromatin interactive
region (count:21)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:699 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:36661623-36661872	K562	blood:	n/a	n/a
2	ATF2	chr19:36661610-36661898	H1-hESC	embryonic stem cell:	n/a	n/a
3	ATF3	chr19:36661472-36662013	A549	lung:	n/a	n/a
4	BACH1	chr19:36661555-36661901	H1-hESC	embryonic stem cell:	n/a	n/a
5	BATF	chr19:36647521-36647747	GM12878	blood:	n/a	n/a
6	BCL3	chr19:36659792-36660830	A549	lung:	n/a	n/a
7	BCL3	chr19:36661422-36662181	A549	lung:	n/a	n/a
8	BCL3	chr19:36661423-36662037	A549	lung:	n/a	n/a
9	BHLHE40	chr19:36661739-36661826	K562	blood:	n/a	n/a
10	BHLHE40	chr19:36661652-36661920	GM12878	blood:	n/a	n/a
11	BRCA1	chr19:36660288-36660328	Hela-S3	cervix:	n/a	n/a
12	BRCA1	chr19:36661644-36661938	H1-hESC	embryonic stem cell:	n/a	n/a
13	CEBPB	chr19:36661552-36661843	H1-hESC	embryonic stem cell:	n/a	n/a
14	CEBPB	chr19:36682742-36682876	HepG2	liver:	n/a	chr19:36682806-36682817
15	CEBPB	chr19:36668204-36668319	A549	lung:	n/a	n/a
16	CEBPB	chr19:36663037-36663069	K562	blood:	n/a	n/a
17	CEBPB	chr19:36658928-36659127	K562	blood:	n/a	n/a
18	CEBPB	chr19:36645637-36645663	A549	lung:	n/a	n/a
19	CEBPB	chr19:36645017-36645241	IMR90	lung:	n/a	n/a
20	CEBPB	chr19:36668247-36668307	K562	blood:	n/a	n/a
21	CEBPB	chr19:36675058-36675173	HepG2	liver:	n/a	chr19:36675071-36675084 chr19:36675071-36675082 chr19:36675071-36675084 chr19:36675072-36675083
22	CEBPB	chr19:36675004-36675158	A549	lung:	n/a	chr19:36675071-36675084 chr19:36675071-36675082 chr19:36675071-36675084 chr19:36675072-36675083
23	CEBPB	chr19:36681579-36681594	H1-hESC	embryonic stem cell:	n/a	n/a
24	CEBPB	chr19:36682709-36682898	A549	lung:	n/a	chr19:36682806-36682817
25	CEBPB	chr19:36669714-36669849	A549	lung:	n/a	n/a
26	CHD2	chr19:36661661-36661902	H1-hESC	embryonic stem cell:	n/a	n/a
27	CHD2	chr19:36661680-36661819	HepG2	liver:	n/a	n/a
28	CHD2	chr19:36661651-36661882	GM12878	blood:	n/a	n/a
29	CTCF	chr19:36661740-36661890	HBMEC	blood vessel:	n/a	chr19:36661795-36661813 chr19:36661796-36661812 chr19:36661790-36661811
30	CTCF	chr19:36681632-36681633	GM10248	blood:	n/a	n/a
31	CTCF	chr19:36661760-36661910	HA-sp	spinal cord:	n/a	chr19:36661795-36661813 chr19:36661796-36661812 chr19:36661790-36661811
32	CTCF	chr19:36681440-36681590	HFF-Myc	foreskin:	n/a	n/a
33	CTCF	chr19:36681460-36681610	GM12870	blood:	n/a	n/a
34	CTCF	chr19:36661720-36661870	HEK293	kidney:	n/a	chr19:36661795-36661813 chr19:36661796-36661812 chr19:36661790-36661811
35	CTCF	chr19:36681516-36681636	GM12892	blood:	n/a	n/a
36	CTCF	chr19:36661760-36661910	HMF	breast:	n/a	chr19:36661795-36661813 chr19:36661796-36661812 chr19:36661790-36661811
37	CTCF	chr19:36681461-36681585	Kidney_OC	kidney:	n/a	n/a
38	CTCF	chr19:36681380-36681530	GM12866	blood:	n/a	n/a
39	CTCF	chr19:36661780-36661930	NB4	blood:	n/a	chr19:36661795-36661813 chr19:36661796-36661812 chr19:36661790-36661811
40	CTCF	chr19:36681409-36681643	K562	blood:	n/a	n/a
41	CTCF	chr19:36661760-36661910	HPF	lung:	n/a	chr19:36661795-36661813 chr19:36661796-36661812 chr19:36661790-36661811
42	CTCF	chr19:36681360-36681805	SK-N-SH	brain:	n/a	n/a
43	CTCF	chr19:36661673-36661927	Kidney_OC	kidney:	n/a	chr19:36661795-36661813 chr19:36661796-36661812 chr19:36661790-36661811
44	CTCF	chr19:36661550-36661995	HepG2	liver:	n/a	chr19:36661795-36661813 chr19:36661796-36661812 chr19:36661790-36661811
45	CTCF	chr19:36681440-36681590	Caco-2	colon:	n/a	n/a
46	CTCF	chr19:36661720-36661870	K562	blood:	n/a	chr19:36661795-36661813 chr19:36661796-36661812 chr19:36661790-36661811
47	CTCF	chr19:36661740-36661890	GM12864	blood:	n/a	chr19:36661795-36661813 chr19:36661796-36661812 chr19:36661790-36661811
48	CTCF	chr19:36681460-36681610	HBMEC	blood vessel:	n/a	n/a
49	CTCF	chr19:36661740-36661890	BE2_C	brain:	n/a	chr19:36661795-36661813 chr19:36661796-36661812 chr19:36661790-36661811
50	CTCF	chr19:36681512-36681609	ProgFib	skin:	n/a	n/a

(count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:36643771-36643821	HepG2	liver:	n/a
2	chr19:36673729-36673779	HIPEpiC	eye:	n/a
3	chr19:36644751-36644801	HEEpiC	esophagus:	n/a
4	chr19:36644277-36644327	HIPEpiC	eye:	n/a
5	chr19:36643771-36643821	HEK293	kidney:	embryo
6	chr19:36643771-36643821	A549	lung:	n/a
7	chr19:36644277-36644327	Jurkat	blood:	n/a
8	chr19:36644751-36644801	IMR90	lung:	fetal
9	chr19:36673729-36673779	AG09309	skin:	n/a
10	chr19:36644277-36644327	HUVEC	blood vessel:	n/a
11	chr19:36643771-36643821	HMEC	breast:	n/a
12	chr19:36644751-36644801	NHDF-neo	bronchial:	n/a
13	chr19:36644751-36644801	U87	brain:	n/a
14	chr19:36643771-36643821	BJ	skin:	n/a
15	chr19:36643771-36643821	SK-N-MC	brain:	n/a
16	chr19:36643771-36643821	AG04449	skin:	fetal
17	chr19:36643771-36643821	GM12878	blood:	n/a
18	chr19:36644277-36644327	NH-A	brain:	n/a
19	chr19:36673729-36673779	U87	brain:	n/a
20	chr19:36644277-36644327	PFSK-1	brain:	n/a
21	chr19:36644751-36644801	RPTEC	kidney:	n/a
22	chr19:36644277-36644327	HCT-116	colon:	n/a
23	chr19:36644751-36644801	AoSMC	blood vessel:	n/a
24	chr19:36643771-36643821	HCPEpiC	choroid plexus:	n/a
25	chr19:36644277-36644327	GM12878	blood:	n/a
26	chr19:36643771-36643821	HIPEpiC	eye:	n/a
27	chr19:36644751-36644801	PFSK-1	brain:	n/a
28	chr19:36644277-36644327	HEK293	kidney:	embryo
29	chr19:36643771-36643821	BE2_C	brain:	n/a
30	chr19:36644751-36644801	LNCaP	prostate:	n/a
31	chr19:36644751-36644801	Jurkat	blood:	n/a
32	chr19:36644277-36644327	NB4	blood:	n/a
33	chr19:36643771-36643821	K562	blood:	n/a
34	chr19:36644277-36644327	CMK	blood:	n/a
35	chr19:36643771-36643821	HUVEC	blood vessel:	n/a
36	chr19:36643771-36643821	AG04450	lung:	fetal
37	chr19:36643771-36643821	Caco-2	colon:	n/a
38	chr19:36644751-36644801	BE2_C	brain:	n/a
39	chr19:36673729-36673779	HEK293	kidney:	embryo
40	chr19:36644277-36644327	SK-N-SH_RA	brain:	n/a
41	chr19:36673729-36673779	AG04449	skin:	fetal
42	chr19:36644277-36644327	AoSMC	blood vessel:	n/a
43	chr19:36644751-36644801	ECC-1	luminal epithelium:	n/a
44	chr19:36643771-36643821	NT2-D1	testis:	n/a
45	chr19:36643771-36643821	T-47D	breast:	n/a
46	chr19:36673729-36673779	H1-hESC	embryonic stem cell:	embryo
47	chr19:36643771-36643821	SAEC	small airway:	n/a
48	chr19:36644277-36644327	BE2_C	brain:	n/a
49	chr19:36644751-36644801	HMEC	breast:	n/a
50	chr19:36673729-36673779	HRPEpiC	eye:	n/a

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:36618283..36619274-chr19:36661381..36662319,5	MCF-7	breast:
2	chr19:36617317..36620455-chr19:36659858..36661867,3	MCF-7	breast:
3	chr19:36654605..36656507-chr19:36659169..36663563,3	K562	blood:
4	chr19:36654605..36656507-chr19:36659169..36663563,3	K562	blood:
5	chr19:36643816..36646322-chr19:36651862..36654604,2	K562	blood:
6	chr19:36630738..36632588-chr19:36651026..36652754,2	MCF-7	breast:
7	chr19:36630474..36632360-chr19:36658815..36660457,2	K562	blood:
8	chr19:36680583..36682778-chr19:36705094..36707466,2	K562	blood:
9	chr19:36635447..36638773-chr19:36641889..36645478,3	K562	blood:
10	chr19:36630037..36631640-chr19:36661058..36663609,2	MCF-7	breast:
11	chr19:36643816..36646322-chr19:36651862..36654604,2	K562	blood:
12	chr19:36603757..36607457-chr19:36664359..36667558,3	MCF-7	breast:
13	chr19:36618311..36619273-chr19:36661263..36662378,12	K562	blood:
14	chr19:36630495..36633195-chr19:36673686..36676054,2	MCF-7	breast:
15	chr19:36669839..36671925-chr19:36705254..36707689,2	MCF-7	breast:
16	chr19:36679317..36682281-chr19:36704526..36707611,3	MCF-7	breast:
17	chr19:36545308..36547360-chr19:36658734..36661646,2	K562	blood:
18	chr19:36630490..36632500-chr19:36659583..36661688,2	K562	blood:
19	chr19:36630678..36632307-chr19:36642468..36644265,2	K562	blood:
20	chr19:36629927..36632292-chr19:36660108..36661743,2	MCF-7	breast:
21	chr19:36636004..36639367-chr19:36650877..36653820,3	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF565-1	chr19:36664308-36664755	NONHSAT065966
2	lnc-CAPNS1-2	chr19:36646018-36647113	NONHSAT065965
3	lnc-COX7A1-4	chr19:36685729-36686058	NONHSAT065969
4	lnc-CAPNS1-1	chr19:36644712-36645101	NONHSAT065964
5	lnc-COX7A1-3	chr19:36680096-36680380	NONHSAT065967
6	lnc-COX7A1-4	chr19:36685527-36686058	NONHSAT065968

No data

Variant related genes	Relation type
COX7A1	TF binding region
ENSG00000267005	TF binding region
RN7SL287P	TF binding region
ENSG00000270760	TF binding region
COX7A1	CpG island
ENSG00000267005	CpG island
RN7SL287P	CpG island
ENSG00000270760	CpG island
ENSG00000075702	chromatin interactions
ENSG00000161277	chromatin interactions
ENSG00000105254	chromatin interactions
ENSG00000270760	chromatin interactions
ENSG00000167635	chromatin interactions
ENSG00000126247	chromatin interactions
ENSG00000105258	chromatin interactions
ENSG00000196357	chromatin interactions

Extended variants
information (count: 1857 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:1857 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs753420	chr19:36643695-36643696	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs142294636	chr19:36643714-36643715	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs539690913	chr19:36643804-36643805	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs559124376	chr19:36643827-36643828	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs73928401	chr19:36643852-36643853	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs570437018	chr19:36643885-36643886	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs7507569	chr19:36643931-36643932	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs554525408	chr19:36643932-36643933	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs73928402	chr19:36643949-36643950	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs562133452	chr19:36644065-36644066	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs7248312	chr19:36644075-36644076	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs544697440	chr19:36644116-36644117	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs181820378	chr19:36644130-36644131	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs533244888	chr19:36644132-36644133	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs551594687	chr19:36644137-36644138	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs117104434	chr19:36644173-36644174	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs535450298	chr19:36644259-36644260	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs79042810	chr19:36644260-36644261	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs141142459	chr19:36644271-36644272	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs371373706	chr19:36644297-36644298	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs185397544	chr19:36644307-36644308	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs568055861	chr19:36644354-36644355	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs535058925	chr19:36644363-36644364	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs190881219	chr19:36644381-36644382	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs550546501	chr19:36644385-36644386	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs569012472	chr19:36644410-36644411	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs539522785	chr19:36644419-36644420	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs370061046	chr19:36644445-36644446	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs552733786	chr19:36644450-36644451	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs558008467	chr19:36644454-36644455	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs573045379	chr19:36644471-36644472	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs534107688	chr19:36644504-36644505	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs35914259	chr19:36644507-36644508	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs555329016	chr19:36644511-36644512	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs182759029	chr19:36644528-36644529	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs544323030	chr19:36644541-36644542	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs186506315	chr19:36644545-36644546	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs144517565	chr19:36644583-36644584	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs545072870	chr19:36644601-36644602	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs373272755	chr19:36644610-36644611	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs527840806	chr19:36644628-36644629	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs12608775	chr19:36644633-36644634	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs141497546	chr19:36644656-36644657	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs572333045	chr19:36644662-36644663	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs539936336	chr19:36644755-36644756	Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
46	rs191401060	chr19:36644761-36644762	Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
47	rs550627871	chr19:36644807-36644808	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
48	rs568845713	chr19:36644858-36644859	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
49	rs182903124	chr19:36644862-36644863	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
50	rs551459463	chr19:36644897-36644898	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Ovarian cancer	21397856	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Ovarian cancer	20844748	CNVD
Non-small cell lung cancer	21829676	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cancer	21183584	CNVD
Honadal dysgenesis	21048976	CNVD
Neurodevelopmental disorder	22521361	CNVD
Endometrial cancer	23636398	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Gastric cancer	21811585	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Glioma	17123091	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:1076 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36632800-36644400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr19:36632800-36645600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr19:36633000-36644800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr19:36633000-36645600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr19:36633000-36645600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr19:36633000-36645600	Strong transcription	A549	lung
7	chr19:36633400-36645000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr19:36636000-36650400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr19:36638400-36661600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr19:36640600-36652000	Weak transcription	K562	blood
11	chr19:36640800-36644000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr19:36641400-36652200	Weak transcription	GM12878-XiMat	blood
13	chr19:36641600-36643800	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
14	chr19:36641600-36644000	Active TSS	Fetal Kidney	kidney
15	chr19:36641800-36650600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr19:36641800-36652000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr19:36641800-36652000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr19:36642000-36643800	Active TSS	iPS-15b Cell Line	embryonic stem cell
19	chr19:36642000-36643800	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
20	chr19:36642000-36644000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr19:36642000-36644000	Active TSS	Osteobl	bone
22	chr19:36642000-36660000	Weak transcription	Stomach Mucosa	stomach
23	chr19:36642200-36643800	Active TSS	H1 Cell Line	embryonic stem cell
24	chr19:36642200-36643800	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr19:36642200-36643800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr19:36642200-36643800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr19:36642200-36643800	Active TSS	Brain Hippocampus Middle	brain
28	chr19:36642200-36643800	Active TSS	Colon Smooth Muscle	Colon
29	chr19:36642200-36643800	Active TSS	Fetal Lung	lung
30	chr19:36642200-36643800	Active TSS	Left Ventricle	heart
31	chr19:36642200-36644000	Active TSS	Brain Angular Gyrus	brain
32	chr19:36642200-36644000	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr19:36642200-36644000	Active TSS	Psoas Muscle	Psoas
34	chr19:36642200-36644000	Active TSS	Right Atrium	heart
35	chr19:36642200-36644000	Flanking Active TSS	HUVEC	blood vessel
36	chr19:36642200-36644000	Active TSS	NHDF-Ad	bronchial
37	chr19:36642200-36644200	Active TSS	Aorta	Aorta
38	chr19:36642200-36644200	Active TSS	Right Ventricle	heart
39	chr19:36642200-36646400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr19:36642200-36650400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr19:36642200-36654200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr19:36642200-36660000	Weak transcription	Brain Substantia Nigra	brain
43	chr19:36642200-36660000	Weak transcription	Hela-S3	cervix
44	chr19:36642200-36673400	Weak transcription	Primary B cells from cord blood	blood
45	chr19:36642400-36643800	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr19:36642400-36643800	Transcr. at gene 5' and 3'	ES-UCSF4 Cell Line	embryonic stem cell
47	chr19:36642400-36643800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
48	chr19:36642400-36643800	Active TSS	Brain Inferior Temporal Lobe	brain
49	chr19:36642400-36643800	Active TSS	Esophagus	oesophagus
50	chr19:36642400-36643800	Active TSS	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links