Variant report

Variant	nsv580034
Chromosome Location	chr19:53302481-53424324
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1325)
CpG islands
(count:2017)
Chromatin interactive
region (count:42)
LncRNA
region (count:45)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:1325 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr19:53324738-53324945	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr19:53400547-53401042	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr19:53360719-53361014	H1-hESC	embryonic stem cell:	n/a	n/a
4	BATF	chr19:53407016-53407286	GM12878	blood:	n/a	n/a
5	BATF	chr19:53336688-53337003	GM12878	blood:	n/a	chr19:53336917-53336927 chr19:53336913-53336923 chr19:53336723-53336732 chr19:53336898-53336906
6	BATF	chr19:53336721-53337013	GM12878	blood:	n/a	chr19:53336917-53336927 chr19:53336913-53336923 chr19:53336723-53336732 chr19:53336898-53336906
7	BCL11A	chr19:53362420-53362624	GM12878	blood:	n/a	n/a
8	BCL11A	chr19:53360679-53360916	GM12878	blood:	n/a	chr19:53360828-53360837
9	BHLHE40	chr19:53324867-53324898	K562	blood:	n/a	n/a
10	BHLHE40	chr19:53400368-53401093	GM12878	blood:	n/a	n/a
11	BHLHE40	chr19:53376302-53376339	K562	blood:	n/a	n/a
12	BHLHE40	chr19:53401560-53401600	K562	blood:	n/a	n/a
13	BHLHE40	chr19:53400452-53401079	K562	blood:	n/a	n/a
14	BHLHE40	chr19:53360687-53361035	GM12878	blood:	n/a	chr19:53360820-53360836 chr19:53360998-53361014
15	BRCA1	chr19:53400249-53401056	Hela-S3	cervix:	n/a	n/a
16	BRCA1	chr19:53400246-53400961	H1-hESC	embryonic stem cell:	n/a	n/a
17	BRCA1	chr19:53400551-53400898	GM12878	blood:	n/a	n/a
18	CBX3	chr19:53303081-53303524	K562	blood:	n/a	n/a
19	CBX3	chr19:53399712-53400079	K562	blood:	n/a	n/a
20	CBX3	chr19:53324640-53325255	K562	blood:	n/a	n/a
21	CBX3	chr19:53360595-53361343	K562	blood:	n/a	n/a
22	CBX3	chr19:53400349-53401271	K562	blood:	n/a	n/a
23	CBX3	chr19:53376216-53376620	K562	blood:	n/a	n/a
24	CBX3	chr19:53303091-53303540	K562	blood:	n/a	n/a
25	CBX3	chr19:53383913-53384365	K562	blood:	n/a	n/a
26	CCNT2	chr19:53361004-53361276	K562	blood:	n/a	n/a
27	CCNT2	chr19:53400798-53401141	K562	blood:	n/a	n/a
28	CEBPB	chr19:53329012-53329572	K562	blood:	n/a	n/a
29	CEBPB	chr19:53345865-53346133	HepG2	liver:	n/a	chr19:53346019-53346030
30	CEBPB	chr19:53329163-53329370	H1-hESC	embryonic stem cell:	n/a	n/a
31	CEBPB	chr19:53328995-53329384	K562	blood:	n/a	n/a
32	CEBPB	chr19:53399436-53399442	K562	blood:	n/a	n/a
33	CEBPB	chr19:53345864-53346169	IMR90	lung:	n/a	chr19:53346019-53346030
34	CEBPB	chr19:53319087-53319167	HepG2	liver:	n/a	chr19:53319119-53319130
35	CEBPB	chr19:53400754-53401233	K562	blood:	n/a	n/a
36	CEBPB	chr19:53329098-53329325	K562	blood:	n/a	n/a
37	CEBPB	chr19:53363042-53363321	K562	blood:	n/a	n/a
38	CEBPB	chr19:53407854-53408032	HepG2	liver:	n/a	n/a
39	CEBPB	chr19:53400920-53401034	H1-hESC	embryonic stem cell:	n/a	n/a
40	CEBPB	chr19:53329092-53329271	MCF-7	breast:	n/a	n/a
41	CEBPB	chr19:53363179-53363319	H1-hESC	embryonic stem cell:	n/a	n/a
42	CEBPB	chr19:53345961-53346152	A549	lung:	n/a	chr19:53346019-53346030
43	CEBPB	chr19:53363838-53364091	IMR90	lung:	n/a	n/a
44	CEBPD	chr19:53329085-53329417	K562	blood:	n/a	n/a
45	CEBPD	chr19:53394674-53395077	K562	blood:	n/a	n/a
46	CEBPD	chr19:53376161-53376655	K562	blood:	n/a	n/a
47	CEBPD	chr19:53360693-53360926	HepG2	liver:	n/a	n/a
48	CHD1	chr19:53400535-53400920	GM12878	blood:	n/a	n/a
49	CHD2	chr19:53360829-53361263	GM12878	blood:	n/a	n/a
50	CHD2	chr19:53400483-53401264	GM12878	blood:	n/a	chr19:53401172-53401179

(count:2017 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:53394977-53395027	A549	lung:	n/a
2	chr19:53400981-53401031	AG04449	skin:	fetal
3	chr19:53361164-53361214	GM12892	blood:	n/a
4	chr19:53359733-53359783	GM06990	blood:	n/a
5	chr19:53394977-53395027	A549	lung:	n/a
6	chr19:53400981-53401031	AG04449	skin:	fetal
7	chr19:53361164-53361214	GM12892	blood:	n/a
8	chr19:53359733-53359783	GM06990	blood:	n/a
9	chr19:53383549-53383599	SK-N-SH	brain:	n/a
10	chr19:53395225-53395275	PrEC	prostate:	n/a
11	chr19:53302456-53302506	HNPCEpiC	eye:	n/a
12	chr19:53357134-53357184	AG09319	gingival:	n/a
13	chr19:53326219-53326269	HEEpiC	esophagus:	n/a
14	chr19:53394977-53395027	RPTEC	kidney:	n/a
15	chr19:53395635-53395685	HepG2	liver:	n/a
16	chr19:53344366-53344416	CMK	blood:	n/a
17	chr19:53361448-53361498	NHBE	bronchial:	n/a
18	chr19:53357134-53357184	ovcar-3	ovarian:	n/a
19	chr19:53324198-53324248	HIPEpiC	eye:	n/a
20	chr19:53326091-53326141	HRPEpiC	eye:	n/a
21	chr19:53361066-53361116	AG04449	skin:	fetal
22	chr19:53303448-53303498	U87	brain:	n/a
23	chr19:53401204-53401254	Hela-S3	cervix:	n/a
24	chr19:53324198-53324248	HEK293	kidney:	embryo
25	chr19:53400933-53400983	SAEC	small airway:	n/a
26	chr19:53359733-53359783	ProgFib	skin:	n/a
27	chr19:53362925-53362975	AoSMC	blood vessel:	n/a
28	chr19:53394977-53395027	GM12878	blood:	n/a
29	chr19:53324732-53324782	PANC-1	pancreas:	n/a
30	chr19:53394626-53394676	NT2-D1	testis:	n/a
31	chr19:53302456-53302506	PFSK-1	brain:	n/a
32	chr19:53324198-53324248	H1-hESC	embryonic stem cell:	embryo
33	chr19:53360213-53360263	SK-N-SH	brain:	n/a
34	chr19:53401204-53401254	SKMC	muscle:	n/a
35	chr19:53344366-53344416	MCF10A-Er-Src	breast:	n/a
36	chr19:53400778-53400828	HCM	heart:	n/a
37	chr19:53360728-53360778	NH-A	brain:	n/a
38	chr19:53362925-53362975	ECC-1	luminal epithelium:	n/a
39	chr19:53363482-53363532	HL-60	blood:	n/a
40	chr19:53400981-53401031	HNPCEpiC	eye:	n/a
41	chr19:53401204-53401254	ovcar-3	ovarian:	n/a
42	chr19:53400545-53400595	HUVEC	blood vessel:	n/a
43	chr19:53363482-53363532	AG10803	skin:	n/a
44	chr19:53362925-53362975	T-47D	breast:	n/a
45	chr19:53403009-53403059	LNCaP	prostate:	n/a
46	chr19:53360728-53360778	BJ	skin:	n/a
47	chr19:53400981-53401031	AG09319	gingival:	n/a
48	chr19:53342580-53342630	HCT-116	colon:	n/a
49	chr19:53400933-53400983	BE2_C	brain:	n/a
50	chr19:53395635-53395685	HNPCEpiC	eye:	n/a

(count:42 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:53398338..53401958-chr19:53425181..53428572,6	K562	blood:
2	chr19:53390480..53393412-chr19:53415932..53418277,2	K562	blood:
3	chr19:53359564..53361265-chr19:53424872..53426783,2	MCF-7	breast:
4	chr19:53324497..53325251-chr19:53360339..53360857,4	MCF-7	breast:
5	chr19:53288948..53291766-chr19:53301308..53304079,2	K562	blood:
6	chr19:53380234..53382987-chr19:53399088..53400987,2	K562	blood:
7	chr19:53400711..53402486-chr19:53463191..53466156,2	K562	blood:
8	chr19:53339213..53341134-chr20:46203984..46206130,2	MCF-7	breast:
9	chr19:53322321..53326212-chr19:53359321..53361245,3	K562	blood:
10	chr19:53398490..53401733-chr19:53415760..53419901,4	K562	blood:
11	chr19:53419869..53422803-chr19:53423217..53426977,4	K562	blood:
12	chr19:53398338..53403121-chr19:53425170..53428184,6	K562	blood:
13	chr19:53377771..53379611-chr19:53399736..53401870,2	K562	blood:
14	chr19:53399773..53402425-chr19:53424830..53427617,2	MCF-7	breast:
15	chr19:53322321..53326212-chr19:53359240..53361245,4	K562	blood:
16	chr19:53393138..53396276-chr19:53398172..53401096,6	MCF-7	breast:
17	chr19:53322321..53326212-chr19:53359240..53361245,4	K562	blood:
18	chr19:53399381..53402083-chr19:53412934..53414945,2	K562	blood:
19	chr19:53335113..53339470-chr19:53340101..53344099,5	K562	blood:
20	chr19:53338835..53341536-chr19:53343202..53344870,2	K562	blood:
21	chr19:53398857..53399725-chr3:31226625..31227200,2	MCF-7	breast:
22	chr19:53391514..53397028-chr19:53398889..53402751,6	K562	blood:
23	chr19:53419869..53422803-chr19:53423217..53426977,4	K562	blood:
24	chr19:53324497..53325251-chr19:53360339..53360857,4	MCF-7	breast:
25	chr19:53400554..53402197-chr19:53402529..53405491,2	MCF-7	breast:
26	chr19:53393138..53396276-chr19:53398172..53401096,6	MCF-7	breast:
27	chr19:53418400..53422745-chr19:53423096..53427800,7	K562	blood:
28	chr19:53359757..53362433-chr19:53464752..53467349,2	MCF-7	breast:
29	chr19:53324563..53325122-chr19:53360322..53360852,2	NB4	blood:
30	chr19:53322321..53326212-chr19:53359321..53361245,3	K562	blood:
31	chr18:61637223..61637841-chr19:53397208..53398194,2	Hela-S3	cervix:
32	chr19:53397070..53398594-chr19:53398820..53400571,2	MCF-7	breast:
33	chr19:53380234..53382987-chr19:53399088..53400987,2	K562	blood:
34	chr19:53338835..53341536-chr19:53343202..53344870,2	K562	blood:
35	chr19:53418400..53422745-chr19:53423096..53427800,7	K562	blood:
36	chr19:53391514..53397028-chr19:53398889..53402751,6	K562	blood:
37	chr19:53412333..53414642-chr19:53425536..53427807,2	K562	blood:
38	chr19:53193532..53195862-chr19:53359115..53361191,3	K562	blood:
39	chr19:53324392..53324894-chr19:53934932..53935516,2	MCF-7	breast:
40	chr19:53335113..53339470-chr19:53340101..53344099,5	K562	blood:
41	chr19:53390480..53393412-chr19:53415932..53418277,2	K562	blood:
42	chr19:53357060..53358583-chr19:53400479..53402706,2	MCF-7	breast:

(count:45 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF468-1	chr19:53357511-53357598	NR_102300
2	lnc-ZNF468-1	chr19:53352340-53352466	NR_102300
3	lnc-ZNF320-2	chr19:53394513-53394599	NONHSAT067596
4	lnc-ZNF320-2	chr19:53400773-53400888	NONHSAT067597
5	lnc-ZNF468-3	chr19:53317537-53317679	NONHSAT067589
6	lnc-ZNF468-3	chr19:53321197-53321281	NONHSAT067589
7	lnc-ZNF468-1	chr19:53341785-53345404	NR_102299
8	lnc-ZNF320-3	chr19:53377245-53377325	NONHSAT067591
9	lnc-ZNF320-3	chr19:53367043-53367412	NONHSAT067591
10	lnc-ZNF320-2	chr19:53397032-53397174	NONHSAT067596
11	lnc-ZNF320-2	chr19:53398644-53399035	NONHSAT067597
12	lnc-ZNF468-1	chr19:53357511-53357598	NR_102299
13	lnc-ZNF468-1	chr19:53357125-53357379	NR_102299
14	lnc-ZNF468-1	chr19:53360825-53360902	NR_102299
15	lnc-ZNF468-3	chr19:53321197-53321284	NONHSAT067588
16	lnc-ZNF320-3	chr19:53382704-53382886	NONHSAT067592
17	lnc-ZNF320-2	chr19:53396637-53396872	NONHSAT067595
18	lnc-ZNF468-1	chr19:53348432-53348549	NR_102299
19	lnc-ZNF320-3	chr19:53377245-53377325	NONHSAT067592
20	lnc-ZNF468-1	chr19:53360825-53360902	NR_102301
21	lnc-ZNF468-1	chr19:53352340-53352466	NR_102301
22	lnc-ZNF468-1	chr19:53352340-53352466	NR_102299
23	lnc-ZNF468-1	chr19:53341785-53345404	NR_102300
24	lnc-ZNF320-2	chr19:53400773-53400908	NONHSAT067594
25	lnc-ZNF320-2	chr19:53400773-53400902	NONHSAT067595
26	lnc-ZNF320-2	chr19:53394482-53394599	NONHSAT067594
27	lnc-ZNF320-1	chr19:53398098-53398409	NONHSAT067593
28	lnc-ZNF468-1	chr19:53357511-53357598	NR_102301
29	lnc-ZNF468-1	chr19:53357125-53357379	NR_102301
30	lnc-ZNF468-1	chr19:53360825-53360902	NR_102300
31	lnc-ZNF320-1	chr19:53379431-53379838	NONHSAT067593
32	lnc-ZNF320-3	chr19:53377411-53377490	NONHSAT067591
33	lnc-ZNF320-2	chr19:53396637-53396872	NONHSAT067594
34	lnc-ZNF468-1	chr19:53357125-53357360	NR_102300
35	lnc-ZNF320-2	chr19:53397032-53397109	NONHSAT067595
36	lnc-ZNF320-2	chr19:53394482-53394599	NONHSAT067595
37	lnc-ZNF320-2	chr19:53393514-53393581	NONHSAT067594
38	lnc-ZNF468-1	chr19:53341785-53345404	NR_102301
39	lnc-ZNF468-3	chr19:53324839-53324886	NONHSAT067588
40	lnc-ZNF320-3	chr19:53367175-53367412	NONHSAT067592
41	lnc-ZNF468-3	chr19:53311129-53311386	NONHSAT067588
42	lnc-ZNF468-1	chr19:53348432-53348549	NR_102300
43	lnc-ZNF701-2	chr19:53342913-53343520	NONHSAT067585
44	lnc-ZNF468-2	chr19:53365060-53366119	NONHSAT067590
45	lnc-ZNF320-2	chr19:53393562-53393581	NONHSAT067595

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	ZNF320	hsa-miR-192-5p	chr19:53381440-53381461

Variant related genes	Relation type
ENSG00000268225	TF binding region
ZNF320	TF binding region
ZNF28	TF binding region
ZNF468	TF binding region
ENSG00000269646	TF binding region
ENSG00000255875	TF binding region
ZNF888	TF binding region
ENSG00000268225	CpG island
ZNF320	CpG island
ZNF28	CpG island
ZNF468	CpG island
ENSG00000269646	CpG island
ENSG00000255875	CpG island
ZNF888	CpG island
ENSG00000180257	chromatin interactions
ENSG00000189190	chromatin interactions
ENSG00000221874	chromatin interactions
ENSG00000241015	chromatin interactions
ENSG00000213793	chromatin interactions
ENSG00000204604	chromatin interactions
ENSG00000166401	chromatin interactions
ENSG00000167766	chromatin interactions
ENSG00000182986	chromatin interactions
ENSG00000198538	chromatin interactions
ENSG00000160336	chromatin interactions
ENSG00000269646	chromatin interactions

Extended variants
information (count: 6232 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:6232 , 50 per page) page: 1 2 3 4 5 6 7 ... 125

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10407539	chr19:53302481-53302482	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs527395218	chr19:53302489-53302490	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs538279572	chr19:53302493-53302494	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs186504807	chr19:53302527-53302528	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs147045862	chr19:53302559-53302560	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs550088835	chr19:53302578-53302579	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs10408156	chr19:53302622-53302623	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs575039843	chr19:53302624-53302625	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs192672365	chr19:53302639-53302640	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs138371643	chr19:53302678-53302679	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs142480960	chr19:53302695-53302696	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs185550273	chr19:53302699-53302700	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs559075349	chr19:53302712-53302713	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs371465484	chr19:53302723-53302724	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs544610019	chr19:53302724-53302725	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs115119333	chr19:53302726-53302727	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs10410012	chr19:53302737-53302738	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs542469740	chr19:53302764-53302765	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs150346798	chr19:53302768-53302769	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs527857810	chr19:53302829-53302830	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs545527335	chr19:53302834-53302835	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs371999424	chr19:53302894-53302895	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs563827798	chr19:53302895-53302896	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs9917046	chr19:53302899-53302900	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	mRNA abundance
25	rs574153174	chr19:53302927-53302928	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs549512525	chr19:53302931-53302932	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs9917044	chr19:53302942-53302943	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
28	rs147053009	chr19:53302960-53302961	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs111592619	chr19:53302983-53302984	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs111678182	chr19:53303025-53303026	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs578181697	chr19:53303031-53303032	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs375620679	chr19:53303048-53303049	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs547638396	chr19:53303049-53303050	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs565912719	chr19:53303053-53303054	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs142168035	chr19:53303077-53303078	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs369479807	chr19:53303085-53303086	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs373555087	chr19:53303104-53303105	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs146037495	chr19:53303147-53303148	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs79157402	chr19:53303148-53303149	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs200862704	chr19:53303151-53303152	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs141298866	chr19:53303152-53303153	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs138509923	chr19:53303164-53303165	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs137872611	chr19:53303170-53303171	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs142391659	chr19:53303182-53303183	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs570956909	chr19:53303221-53303222	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs145963589	chr19:53303246-53303247	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs139889621	chr19:53303248-53303249	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs574742869	chr19:53303249-53303250	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs142945573	chr19:53303254-53303255	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs554431647	chr19:53303257-53303258	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Adrenocortical carcinoma	18281524	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
early-passage human iPS cells	21368824	CNVD
Melanoma	20877625	CNVD
Lung adenocarcinoma	21935476	CNVD

Chromatin state (count:3983 , 50 per page) page: 1 2 3 4 5 6 7 ... 80

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53294600-53311400	ZNF genes & repeats	Liver	Liver
2	chr19:53296200-53324000	Weak transcription	Fetal Brain Male	brain
3	chr19:53297400-53314000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:53299200-53305000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr19:53299200-53311400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr19:53299200-53314000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr19:53299200-53314000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr19:53299200-53314000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr19:53299200-53314000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr19:53299600-53314000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:53299600-53314000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr19:53299800-53314000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr19:53300000-53303200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr19:53300000-53308200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr19:53300200-53305600	ZNF genes & repeats	Fetal Brain Female	brain
16	chr19:53300200-53306600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr19:53300400-53308200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr19:53301000-53305800	ZNF genes & repeats	Brain Angular Gyrus	brain
19	chr19:53301000-53308000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr19:53301000-53308400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
21	chr19:53301000-53314000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr19:53301400-53305000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
23	chr19:53301400-53305600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
24	chr19:53301400-53306000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
25	chr19:53301400-53306000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
26	chr19:53301400-53308000	ZNF genes & repeats	Fetal Lung	lung
27	chr19:53301400-53308800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
28	chr19:53301400-53309200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
29	chr19:53301400-53309600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr19:53301400-53309600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr19:53301400-53310200	ZNF genes & repeats	Adipose Nuclei	Adipose
32	chr19:53301400-53312000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr19:53301400-53314000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
34	chr19:53301600-53303200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr19:53301600-53304400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr19:53301600-53305600	ZNF genes & repeats	Dnd41	blood
37	chr19:53301600-53307800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr19:53301600-53308200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
39	chr19:53301800-53302600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
40	chr19:53301800-53303600	Weak transcription	Fetal Thymus	thymus
41	chr19:53301800-53308200	ZNF genes & repeats	Brain Hippocampus Middle	brain
42	chr19:53301800-53308600	ZNF genes & repeats	Primary T cells from cord blood	blood
43	chr19:53302000-53303200	Weak transcription	Pancreas	Pancrea
44	chr19:53302000-53305400	ZNF genes & repeats	K562	blood
45	chr19:53302000-53305600	Strong transcription	Placenta	Placenta
46	chr19:53302000-53305800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
47	chr19:53302000-53314000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
48	chr19:53302200-53302800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr19:53302200-53305000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
50	chr19:53302200-53305600	ZNF genes & repeats	HSMM	muscle

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