Variant report

Variant	nsv585766
Chromosome Location	chr20:25944966-25952310
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM182A-1	chr20:25945639-25949924	ENSG00000226203
2	lnc-FAM182A-1	chr20:25945639-25949923	XLOC_013502

Extended variants
information (count: 260 )
Associated
traits (count: 46 )

Variant overlapped rSNPs/rCNVs (count:260 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs531174158	chr20:25945644-25945645	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs73599900	chr20:25945680-25945681	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs551170697	chr20:25945710-25945711	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs376269620	chr20:25945711-25945712	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs577025061	chr20:25945712-25945713	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs370362849	chr20:25945720-25945721	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs534848401	chr20:25945721-25945722	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs536916658	chr20:25945730-25945731	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs546698104	chr20:25945742-25945743	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs374120849	chr20:25945745-25945746	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs151028537	chr20:25945776-25945777	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs533247267	chr20:25945779-25945780	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs146432255	chr20:25945791-25945792	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs73599901	chr20:25945807-25945808	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
15	rs370382978	chr20:25945808-25945809	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs569006826	chr20:25945817-25945818	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs56787461	chr20:25945841-25945842	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs73599902	chr20:25945853-25945854	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs66738921	chr20:25945865-25945866	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs73601703	chr20:25945906-25945907	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs554329416	chr20:25945908-25945909	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
22	rs73620349	chr20:25945931-25945932	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
23	rs73601704	chr20:25945974-25945975	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
24	rs73601705	chr20:25945979-25945980	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
25	rs73601706	chr20:25945995-25945996	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
26	rs574661442	chr20:25946037-25946038	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
27	rs6132908	chr20:25946058-25946059	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs73601707	chr20:25946075-25946076	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
29	rs6107111	chr20:25946090-25946091	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
30	rs73601708	chr20:25946093-25946094	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
31	rs553496263	chr20:25946112-25946113	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
32	rs73601709	chr20:25946115-25946116	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
33	rs149264147	chr20:25946133-25946134	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
34	rs545809748	chr20:25946134-25946135	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
35	rs4815489	chr20:25946153-25946154	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs4815490	chr20:25946160-25946161	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs73601710	chr20:25946161-25946162	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
38	rs377491289	chr20:25946162-25946163	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
39	rs4813593	chr20:25946165-25946166	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs188915495	chr20:25946171-25946172	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
41	rs4815491	chr20:25946187-25946188	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs73601711	chr20:25946204-25946205	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
43	rs567045178	chr20:25946233-25946234	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
44	rs73601712	chr20:25946260-25946261	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
45	rs532417690	chr20:25946273-25946274	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
46	rs111761967	chr20:25946290-25946291	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
47	rs73601713	chr20:25946322-25946323	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
48	rs73601714	chr20:25946326-25946327	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
49	rs73601715	chr20:25946370-25946371	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
50	rs79301704	chr20:25946416-25946417	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:46)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25945800-25946200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr20:25946000-25946400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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