Variant report

Variant	nsv585767
Chromosome Location	chr20:25947380-25952310
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM182A-1	chr20:25945639-25949923	XLOC_013502
2	lnc-FAM182A-1	chr20:25945639-25949924	ENSG00000226203

Extended variants
information (count: 162 )
Associated
traits (count: 46 )

Variant overlapped rSNPs/rCNVs (count:162 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs112409271	chr20:25947380-25947381	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs6037306	chr20:25947427-25947428	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs6037307	chr20:25947436-25947437	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs73601731	chr20:25947437-25947438	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs73601732	chr20:25947447-25947448	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs144615610	chr20:25947481-25947482	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs73601733	chr20:25947503-25947504	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs73601734	chr20:25947506-25947507	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs556196575	chr20:25947522-25947523	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs6138761	chr20:25947541-25947542	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs73601735	chr20:25947552-25947553	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs201184164	chr20:25947591-25947592	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs201971635	chr20:25947595-25947596	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs200210403	chr20:25947598-25947599	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs73601736	chr20:25947610-25947611	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs73601737	chr20:25947629-25947630	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs535097077	chr20:25947639-25947640	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs73601738	chr20:25947648-25947649	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs73601739	chr20:25947651-25947652	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs6115440	chr20:25947748-25947749	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs201219491	chr20:25947777-25947778	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs199693065	chr20:25947778-25947779	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs570774793	chr20:25947780-25947781	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs13043952	chr20:25947783-25947784	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs73601742	chr20:25947833-25947834	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs540857491	chr20:25947834-25947835	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs201580418	chr20:25947844-25947845	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs6115441	chr20:25947848-25947849	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs76493027	chr20:25947858-25947859	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs368186626	chr20:25947863-25947864	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs372368918	chr20:25947868-25947869	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs375607303	chr20:25947872-25947873	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs367908242	chr20:25947883-25947884	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs369800725	chr20:25947884-25947885	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs560448578	chr20:25947893-25947894	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs577142826	chr20:25947905-25947906	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs73601743	chr20:25947923-25947924	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs186025328	chr20:25947939-25947940	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs6051067	chr20:25947961-25947962	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs548264757	chr20:25947970-25947971	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs13044338	chr20:25947971-25947972	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs147114819	chr20:25948002-25948003	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs544055194	chr20:25948005-25948006	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs13039883	chr20:25948010-25948011	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs13038591	chr20:25948013-25948014	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs73601744	chr20:25948030-25948031	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs527747736	chr20:25948037-25948038	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs553566142	chr20:25948038-25948039	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs547590640	chr20:25948065-25948066	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs570613711	chr20:25948082-25948083	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:46)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links