Variant report

Variant	nsv585790
Chromosome Location	chr20:26260140-26295705
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4205 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:4205 , 50 per page) page: 1 2 3 4 5 6 7 ... 85

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2263734	chr20:26260140-26260141	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs563717734	chr20:26260143-26260144	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs62199870	chr20:26260144-26260145	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs138428268	chr20:26260145-26260146	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs146138312	chr20:26260148-26260149	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs549475072	chr20:26260163-26260164	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs36188557	chr20:26260165-26260166	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs368081023	chr20:26260169-26260170	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs531831958	chr20:26260170-26260171	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs62199871	chr20:26260171-26260172	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs371784596	chr20:26260173-26260174	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs375186420	chr20:26260176-26260177	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs80205379	chr20:26260182-26260183	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs36141393	chr20:26260184-26260185	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs62199872	chr20:26260187-26260188	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs74186693	chr20:26260191-26260192	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs548727699	chr20:26260192-26260193	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs568692675	chr20:26260193-26260194	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs527961561	chr20:26260218-26260219	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs199618323	chr20:26260221-26260222	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs6084095	chr20:26260229-26260230	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs539733758	chr20:26260231-26260232	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs570853284	chr20:26260239-26260240	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs79232607	chr20:26260240-26260241	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs112068543	chr20:26260243-26260244	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs62199873	chr20:26260247-26260248	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs539806439	chr20:26260248-26260249	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs62199874	chr20:26260253-26260254	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs78569949	chr20:26260254-26260255	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs79132256	chr20:26260260-26260261	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs74747424	chr20:26260267-26260268	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs556699757	chr20:26260275-26260276	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs62199875	chr20:26260278-26260279	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs113300647	chr20:26260280-26260281	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs140755650	chr20:26260287-26260288	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs79668616	chr20:26260295-26260296	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs74417628	chr20:26260296-26260297	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs76950693	chr20:26260298-26260299	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs75501856	chr20:26260299-26260300	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs78914023	chr20:26260301-26260302	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs77089412	chr20:26260303-26260304	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs200754334	chr20:26260306-26260307	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs6037349	chr20:26260307-26260308	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs62199891	chr20:26260312-26260313	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs77463084	chr20:26260314-26260315	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs570139054	chr20:26260317-26260318	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs75429804	chr20:26260320-26260321	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs535307552	chr20:26260321-26260322	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs555523959	chr20:26260332-26260333	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs144592069	chr20:26260335-26260336	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:329 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:26258400-26263000	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr20:26259200-26260200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:26259200-26260400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
4	chr20:26259200-26260400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
5	chr20:26259200-26260400	ZNF genes & repeats	Fetal Heart	heart
6	chr20:26259200-26260400	Active TSS	Psoas Muscle	Psoas
7	chr20:26259200-26260600	ZNF genes & repeats	Dnd41	blood
8	chr20:26259200-26262600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr20:26259200-26262800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr20:26259400-26262600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr20:26259600-26260400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr20:26259600-26260400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
13	chr20:26259600-26261000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr20:26259600-26262800	ZNF genes & repeats	Primary T cells from cord blood	blood
15	chr20:26259800-26260200	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
16	chr20:26259800-26260200	ZNF genes & repeats	Colon Smooth Muscle	Colon
17	chr20:26259800-26260400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr20:26259800-26260400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
19	chr20:26259800-26260400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr20:26259800-26260400	ZNF genes & repeats	Adipose Nuclei	Adipose
21	chr20:26259800-26260400	ZNF genes & repeats	Liver	Liver
22	chr20:26259800-26260400	ZNF genes & repeats	Gastric	stomach
23	chr20:26259800-26260400	ZNF genes & repeats	NH-A	brain
24	chr20:26260000-26260200	ZNF genes & repeats	K562	blood
25	chr20:26260200-26260400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
26	chr20:26260200-26262200	Weak transcription	K562	blood
27	chr20:26260400-26260600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr20:26260400-26261200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr20:26260400-26261400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr20:26260400-26261400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr20:26260400-26262200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr20:26260400-26262200	Weak transcription	Psoas Muscle	Psoas
33	chr20:26260400-26265400	Weak transcription	NH-A	brain
34	chr20:26260600-26261600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr20:26261000-26261800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr20:26261200-26266000	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr20:26261400-26261600	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr20:26261400-26262600	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr20:26261600-26262200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr20:26261600-26262200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr20:26261600-26262200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr20:26261800-26262600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr20:26262000-26262400	ZNF genes & repeats	Liver	Liver
44	chr20:26262000-26262600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
45	chr20:26262200-26262400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr20:26262200-26262600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
47	chr20:26262200-26262600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr20:26262200-26262600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr20:26262200-26262600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
50	chr20:26262200-26262600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood

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