Variant report

Variant	nsv585797
Chromosome Location	chr20:26269497-26295705
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2887 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:2887 , 50 per page) page: 1 2 3 4 5 6 7 ... 58

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6115603	chr20:26269497-26269498	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs115057705	chr20:26269500-26269501	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs139134193	chr20:26269515-26269516	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs146651527	chr20:26269518-26269519	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs141116251	chr20:26269522-26269523	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs79936488	chr20:26269529-26269530	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs567602818	chr20:26269542-26269543	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs202042559	chr20:26269558-26269559	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs1189987	chr20:26269560-26269561	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs77447336	chr20:26269563-26269564	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs112079942	chr20:26269567-26269568	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs112906362	chr20:26269573-26269574	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs375982926	chr20:26269576-26269577	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs201464076	chr20:26269581-26269582	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs369324534	chr20:26269583-26269584	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs566893236	chr20:26269587-26269588	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs377030510	chr20:26269590-26269591	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs373946436	chr20:26269591-26269592	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs370086950	chr20:26269596-26269597	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs539133081	chr20:26269598-26269599	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs377643977	chr20:26269603-26269604	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs201832747	chr20:26269604-26269605	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs374404838	chr20:26269607-26269608	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs376993961	chr20:26269624-26269625	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs370297383	chr20:26269625-26269626	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs373690957	chr20:26269640-26269641	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs377107796	chr20:26269641-26269642	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs558737326	chr20:26269645-26269646	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs370415033	chr20:26269647-26269648	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs374081351	chr20:26269653-26269654	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs575532689	chr20:26269654-26269655	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs544389268	chr20:26269658-26269659	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs554938955	chr20:26269667-26269668	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs574766043	chr20:26269671-26269672	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs199983715	chr20:26269694-26269695	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs62196939	chr20:26269695-26269696	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs377533827	chr20:26269704-26269705	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs147064193	chr20:26269711-26269712	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs145999442	chr20:26269715-26269716	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs532497585	chr20:26269716-26269717	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs143899513	chr20:26269720-26269721	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs62196940	chr20:26269722-26269723	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs200937167	chr20:26269727-26269728	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs150190869	chr20:26269728-26269729	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs62196941	chr20:26269729-26269730	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs62196942	chr20:26269734-26269735	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs62196943	chr20:26269745-26269746	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs202233906	chr20:26269748-26269749	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs79128323	chr20:26269754-26269755	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs77651300	chr20:26269755-26269756	ZNF genes & repeats Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD

Chromatin state (count:225 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:26265800-26274400	Weak transcription	NH-A	brain
2	chr20:26267800-26270200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr20:26268400-26270000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr20:26268400-26270600	Enhancers	Dnd41	blood
5	chr20:26268600-26269800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr20:26268800-26269800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr20:26268800-26270000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr20:26269400-26269800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr20:26269400-26269800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
10	chr20:26269400-26270600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr20:26269800-26270400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr20:26269800-26270600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr20:26269800-26270800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr20:26270000-26270200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
15	chr20:26270000-26270400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr20:26270000-26270400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr20:26270400-26275000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr20:26270400-26275200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr20:26270600-26272000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr20:26270800-26275000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr20:26272000-26272800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr20:26272800-26275000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr20:26274400-26274800	ZNF genes & repeats	HUVEC	blood vessel
24	chr20:26274400-26275400	ZNF genes & repeats	NH-A	brain
25	chr20:26274400-26279000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr20:26274600-26274800	ZNF genes & repeats	HepG2	liver
27	chr20:26274600-26278000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr20:26275000-26275200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr20:26275000-26275400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
30	chr20:26275000-26275400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
31	chr20:26275000-26275400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
32	chr20:26275000-26275400	ZNF genes & repeats	Dnd41	blood
33	chr20:26275000-26279400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr20:26275200-26275400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr20:26275200-26275800	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr20:26275400-26276800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr20:26275400-26276800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr20:26275800-26278600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr20:26276000-26276400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
40	chr20:26276000-26277600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr20:26276800-26277200	Enhancers	Primary T killer memory cells from peripheral blood	blood
42	chr20:26276800-26278000	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr20:26277000-26277200	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr20:26277200-26278600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr20:26277200-26278800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr20:26277400-26278800	Enhancers	Dnd41	blood
47	chr20:26277600-26278800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr20:26278000-26278400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr20:26278000-26280400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr20:26278400-26279000	Enhancers	Primary T helper cells PMA-I stimulated	--

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