Variant report

Variant	nsv585802
Chromosome Location	chr20:26272824-26291669
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2099 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:2099 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2225982	chr20:26272824-26272825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs573016042	chr20:26272852-26272853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs538815239	chr20:26272855-26272856	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs112192486	chr20:26272857-26272858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs2225983	chr20:26272862-26272863	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs112390287	chr20:26272870-26272871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs186676264	chr20:26272871-26272872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs375138145	chr20:26272876-26272877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs575600117	chr20:26272891-26272892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs111905454	chr20:26272909-26272910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs60181117	chr20:26272911-26272912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs544270274	chr20:26272917-26272918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs368138288	chr20:26272946-26272947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs6037355	chr20:26272994-26272995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs6107171	chr20:26273000-26273001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs559962222	chr20:26273012-26273013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs528709648	chr20:26273021-26273022	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs551553864	chr20:26273022-26273023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs573480293	chr20:26273062-26273063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs202002519	chr20:26273071-26273072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs202204980	chr20:26273073-26273074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs565286509	chr20:26273077-26273078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200333186	chr20:26273084-26273085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs531115152	chr20:26273100-26273101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs190361255	chr20:26273104-26273105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs201254831	chr20:26273106-26273107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs567667496	chr20:26273108-26273109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs536225404	chr20:26273109-26273110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs199790123	chr20:26273123-26273124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs200439174	chr20:26273131-26273132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs547099282	chr20:26273135-26273136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs566837275	chr20:26273138-26273139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs201450943	chr20:26273140-26273141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs538876245	chr20:26273151-26273152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs199643214	chr20:26273162-26273163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs558781435	chr20:26273182-26273183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs191730696	chr20:26273194-26273195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs6138846	chr20:26273204-26273205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs200640250	chr20:26273211-26273212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs201855240	chr20:26273219-26273220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs199692561	chr20:26273220-26273221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs200560438	chr20:26273222-26273223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs374297196	chr20:26273223-26273224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs201465300	chr20:26273231-26273232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs368419657	chr20:26273232-26273233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs200711570	chr20:26273234-26273235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs367892915	chr20:26273235-26273236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs202037402	chr20:26273242-26273243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs199894930	chr20:26273243-26273244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs554531136	chr20:26273244-26273245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:26265800-26274400	Weak transcription	NH-A	brain
2	chr20:26270400-26275000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr20:26270400-26275200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr20:26270800-26275000	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr20:26272800-26275000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr20:26274400-26274800	ZNF genes & repeats	HUVEC	blood vessel
7	chr20:26274400-26275400	ZNF genes & repeats	NH-A	brain
8	chr20:26274400-26279000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr20:26274600-26274800	ZNF genes & repeats	HepG2	liver
10	chr20:26274600-26278000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr20:26275000-26275200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:26275000-26275400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
13	chr20:26275000-26275400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
14	chr20:26275000-26275400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
15	chr20:26275000-26275400	ZNF genes & repeats	Dnd41	blood
16	chr20:26275000-26279400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr20:26275200-26275400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr20:26275200-26275800	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr20:26275400-26276800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr20:26275400-26276800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr20:26275800-26278600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr20:26276000-26276400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
23	chr20:26276000-26277600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr20:26276800-26277200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr20:26276800-26278000	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr20:26277000-26277200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr20:26277200-26278600	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr20:26277200-26278800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr20:26277400-26278800	Enhancers	Dnd41	blood
30	chr20:26277600-26278800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr20:26278000-26278400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr20:26278000-26280400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr20:26278400-26279000	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr20:26278600-26278800	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr20:26278600-26279200	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr20:26278800-26279000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr20:26278800-26279200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr20:26278800-26280200	Weak transcription	Dnd41	blood
39	chr20:26279000-26279200	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr20:26279000-26279200	ZNF genes & repeats	HepG2	liver
41	chr20:26279400-26280600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr20:26279400-26285400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr20:26280200-26280400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
44	chr20:26280200-26280400	ZNF genes & repeats	HepG2	liver
45	chr20:26280200-26280800	ZNF genes & repeats	Dnd41	blood
46	chr20:26280200-26281000	ZNF genes & repeats	HUVEC	blood vessel
47	chr20:26280400-26280600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr20:26280400-26280800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
49	chr20:26280800-26285600	Weak transcription	Dnd41	blood
50	chr20:26281000-26285400	Weak transcription	HUVEC	blood vessel

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