Variant report

Variant	nsv604270
Chromosome Location	chr6:101058886-101196080
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:80)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:80 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:101066085..101068490-chr6:101073516..101076131,2	K562	blood:
2	chr6:100559670..100561904-chr6:101108976..101110745,2	MCF-7	breast:
3	chr6:100554526..100556212-chr6:101104828..101106229,8	MCF-7	breast:
4	chr6:101177164..101179260-chr6:101181845..101183395,2	K562	blood:
5	chr6:101139725..101141428-chr6:101141736..101143273,2	K562	blood:
6	chr6:101177164..101179781-chr6:101180643..101183395,2	K562	blood:
7	chr6:101151355..101153775-chr6:101154853..101157255,2	K562	blood:
8	chr6:101073440..101076010-chr6:101092946..101094506,2	K562	blood:
9	chr6:101184266..101186701-chr6:101321079..101322607,2	K562	blood:
10	chr6:101151240..101154082-chr6:101158096..101159766,2	K562	blood:
11	chr6:101137250..101140625-chr6:101142166..101144758,3	K562	blood:
12	chr6:101191819..101193985-chr6:101196760..101198268,2	K562	blood:
13	chr6:101167975..101170318-chr6:101170858..101173669,2	MCF-7	breast:
14	chr6:101090896..101093112-chr6:101096818..101099684,2	K562	blood:
15	chr6:101060989..101063700-chr6:101064166..101066010,2	K562	blood:
16	chr6:101174106..101177005-chr6:101178614..101180763,2	K562	blood:
17	chr6:101163027..101165840-chr6:101165855..101168378,2	K562	blood:
18	chr6:101162028..101164995-chr6:101165855..101170689,5	K562	blood:
19	chr6:101162432..101165009-chr6:101330194..101333113,2	K562	blood:
20	chr6:100564279..100564893-chr6:101111911..101112519,2	MCF-7	breast:
21	chr6:101141922..101144028-chr6:101167838..101169583,2	MCF-7	breast:
22	chr6:101169269..101170858-chr6:101198475..101201217,2	MCF-7	breast:
23	chr6:101166704..101169523-chr6:101191232..101192828,2	K562	blood:
24	chr6:101134397..101137375-chr6:101141087..101145140,3	K562	blood:
25	chr6:101137250..101140625-chr6:101142166..101144758,3	K562	blood:
26	chr6:101120240..101121939-chr6:101124928..101126557,2	K562	blood:
27	chr6:101151355..101153775-chr6:101154853..101157255,2	K562	blood:
28	chr6:101066085..101068490-chr6:101073516..101076131,2	K562	blood:
29	chr6:101090896..101093112-chr6:101096818..101099684,2	K562	blood:
30	chr6:100564262..100565210-chr6:101105116..101106264,3	K562	blood:
31	chr6:100315644..100316614-chr6:101111864..101112500,2	K562	blood:
32	chr6:100564237..100565179-chr6:101105285..101106695,9	MCF-7	breast:
33	chr6:101155893..101159033-chr6:101162373..101164963,3	K562	blood:
34	chr6:101067158..101069268-chr6:101070159..101073076,2	K562	blood:
35	chr6:101057024..101059544-chr6:101398692..101400539,2	K562	blood:
36	chr6:101081950..101083969-chr6:101086738..101088997,2	MCF-7	breast:
37	chr6:101177164..101179781-chr6:101180643..101183395,2	K562	blood:
38	chr6:101174106..101177005-chr6:101178614..101180763,2	K562	blood:
39	chr6:101103606..101105187-chr6:101110691..101113240,2	K562	blood:
40	chr6:101140450..101143009-chr6:101144554..101147348,2	MCF-7	breast:
41	chr6:100315907..100316622-chr6:101105335..101106035,2	K562	blood:
42	chr6:101155893..101159033-chr6:101162373..101164963,3	K562	blood:
43	chr6:100564241..100565258-chr6:101104940..101106162,4	MCF-7	breast:
44	chr6:101141922..101144028-chr6:101167838..101169583,2	MCF-7	breast:
45	chr6:101139725..101141428-chr6:101141736..101143273,2	K562	blood:
46	chr6:101115915..101118042-chr6:101119236..101121242,2	MCF-7	breast:
47	chr6:101134397..101136126-chr6:101142181..101145050,2	K562	blood:
48	chr6:100933157..100934125-chr6:101104912..101105845,2	MCF-7	breast:
49	chr6:101153025..101154840-chr6:101159613..101162231,2	MCF-7	breast:
50	chr6:101151240..101154082-chr6:101158096..101159766,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRIK2-6	chr6:101080704-101080933	uc_202_+
2	lnc-SIM1-3	chr6:101080704-101080933	uc_202_-

No data

Variant related genes	Relation type
ENSG00000124225	chromatin interactions

Extended variants
information (count: 4854 )
Associated
traits (count: 108 )

Variant overlapped rSNPs/rCNVs (count:4854 , 50 per page) page: 1 2 3 4 5 6 7 ... 98

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs386704244	chr6:101058886-101058887	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs541759655	chr6:101058953-101058954	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs116798861	chr6:101058989-101058990	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs558754473	chr6:101058991-101058992	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs151110626	chr6:101059031-101059032	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs577038157	chr6:101059106-101059107	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs76035959	chr6:101059112-101059113	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs556240560	chr6:101059185-101059186	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs574832957	chr6:101059198-101059199	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs141117157	chr6:101059236-101059237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs240112	chr6:101059253-101059254	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs552834202	chr6:101059272-101059273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs201092439	chr6:101059298-101059299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs573117542	chr6:101059343-101059344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs188053463	chr6:101059429-101059430	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs240111	chr6:101059499-101059500	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs181029378	chr6:101059504-101059505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs76761301	chr6:101059536-101059537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs562622066	chr6:101059555-101059556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs529744929	chr6:101059607-101059608	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs201099167	chr6:101059622-101059623	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs240110	chr6:101059629-101059630	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs187151666	chr6:101059661-101059662	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs540854220	chr6:101059681-101059682	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs552460484	chr6:101059704-101059705	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs76639215	chr6:101059728-101059729	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs538095254	chr6:101059734-101059735	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs190819561	chr6:101059736-101059737	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs34931211	chr6:101059743-101059744	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs149769819	chr6:101059853-101059854	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs181473640	chr6:101059855-101059856	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs186159574	chr6:101059910-101059911	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs543652731	chr6:101059938-101059939	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs546182123	chr6:101059957-101059958	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs565183473	chr6:101059980-101059981	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs190136992	chr6:101059982-101059983	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs7741500	chr6:101060083-101060084	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs148778172	chr6:101060157-101060158	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs368134888	chr6:101060158-101060159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs200533377	chr6:101060161-101060162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs562528710	chr6:101060326-101060327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs568544109	chr6:101060334-101060335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs529825287	chr6:101060398-101060399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs2820139	chr6:101060510-101060511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs541583102	chr6:101060526-101060527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs560152189	chr6:101060554-101060555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs527291294	chr6:101060562-101060563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs116374808	chr6:101060608-101060609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs570848450	chr6:101060612-101060613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs531866698	chr6:101060629-101060630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:108)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Lung adenocarcinoma	21935476	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Cancer	21183584	CNVD
Developmental delay	19490664	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
small cell lung cancer	20016488	CNVD
Burkitt''s lymphoma	18698080	CNVD
Ovarian cancer	21720365	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17170743	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21785460	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Developmental delay	21147756	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Myelofibrosis	22110671	CNVD
Obesity	21045960	CNVD
Liver carcinoma	19366792	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	16461572	CNVD
Neurocytoma	17123091	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Urothelial carcinoma	21177765	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:1962 , 50 per page) page: 1 2 3 4 5 6 7 ... 40

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101009000-101065600	Weak transcription	NHEK	skin
2	chr6:101011000-101080800	Weak transcription	HepG2	liver
3	chr6:101016400-101065800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:101017200-101069400	Weak transcription	Fetal Lung	lung
5	chr6:101017800-101069800	Weak transcription	Lung	lung
6	chr6:101020400-101066200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:101025800-101099800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:101027800-101070000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:101028000-101068800	Weak transcription	Psoas Muscle	Psoas
10	chr6:101030200-101070000	Weak transcription	Aorta	Aorta
11	chr6:101032400-101102000	Weak transcription	Thymus	Thymus
12	chr6:101032400-101104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr6:101032600-101102000	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:101032600-101110400	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:101032800-101065600	Weak transcription	Colonic Mucosa	Colon
16	chr6:101033800-101065400	Weak transcription	Hela-S3	cervix
17	chr6:101034000-101085000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:101034400-101066200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:101034400-101084200	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:101034400-101092400	Weak transcription	Pancreas	Pancrea
21	chr6:101035400-101065600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:101035800-101070000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr6:101036000-101064600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:101036000-101075200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr6:101036000-101084800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:101036200-101073000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr6:101036200-101084000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:101037400-101110600	Weak transcription	K562	blood
29	chr6:101037600-101071200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:101037600-101072200	Weak transcription	Adipose Nuclei	Adipose
31	chr6:101037800-101107200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:101038000-101073200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:101038000-101084200	Weak transcription	Fetal Thymus	thymus
34	chr6:101038600-101065400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:101039200-101071200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr6:101041800-101065600	Weak transcription	HSMMtube	muscle
37	chr6:101043800-101070200	Weak transcription	Spleen	Spleen
38	chr6:101048600-101065600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:101049000-101065400	Weak transcription	Ovary	ovary
40	chr6:101049000-101066200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:101049000-101066200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:101049200-101065600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr6:101049200-101066000	Weak transcription	Left Ventricle	heart
44	chr6:101049400-101065600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:101049400-101069400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:101049400-101069400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:101049400-101069400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr6:101049400-101070800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr6:101049600-101065800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:101049600-101070000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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