Variant report

Variant	nsv613075
Chromosome Location	chr9:1524186-1556054
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:1017972..1018656-chr9:1527877..1528623,2	MCF-7	breast:
2	chr9:1459862..1460804-chr9:1527712..1529112,4	MCF-7	breast:

Extended variants
information (count: 1090 )
Associated
traits (count: 100 )

Variant overlapped rSNPs/rCNVs (count:1090 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7022604	chr9:1524186-1524187	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs191219395	chr9:1524188-1524189	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs373004891	chr9:1524195-1524196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs146322704	chr9:1524212-1524213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs181242370	chr9:1524287-1524288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs186708311	chr9:1524300-1524301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs190422806	chr9:1524322-1524323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs537234724	chr9:1524365-1524366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs555124390	chr9:1524411-1524412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs371399352	chr9:1524455-1524456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs570734196	chr9:1524459-1524460	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs115912460	chr9:1524526-1524527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs553639388	chr9:1524537-1524538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs573106607	chr9:1524541-1524542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs542255033	chr9:1524548-1524549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs141723219	chr9:1524552-1524553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs182970514	chr9:1524562-1524563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs144650793	chr9:1524573-1524574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs77172737	chr9:1524578-1524579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs148479501	chr9:1524596-1524597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs532350425	chr9:1524621-1524622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs80355724	chr9:1524636-1524637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs114732889	chr9:1524638-1524639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs115278095	chr9:1524666-1524667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs548206169	chr9:1524709-1524710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs142650161	chr9:1524727-1524728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs530494943	chr9:1524764-1524765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs372096402	chr9:1524766-1524767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs150932055	chr9:1524767-1524768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs570672462	chr9:1524771-1524772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs187619546	chr9:1524775-1524776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs574844215	chr9:1524782-1524783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs375092703	chr9:1524790-1524791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs540277865	chr9:1524823-1524824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs190935207	chr9:1524831-1524832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs368645159	chr9:1524840-1524841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs535465144	chr9:1524864-1524865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs113447369	chr9:1524895-1524896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs35401871	chr9:1524902-1524903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs73641719	chr9:1524928-1524929	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs538305937	chr9:1524933-1524934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs182607951	chr9:1524960-1524961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs74892161	chr9:1524963-1524964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs74952114	chr9:1524967-1524968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs559375638	chr9:1524974-1524975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs573121907	chr9:1524983-1524984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs541744722	chr9:1525007-1525008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs73380136	chr9:1525022-1525023	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs73641721	chr9:1525048-1525049	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs187580066	chr9:1525062-1525063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:100)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Myelofibrosis	22110671	CNVD
Lynch syndrome	18415027	CNVD
Retinoblastoma	21504564	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	22286061	CNVD
Williams-beuren syndrome	18553513	CNVD
Disorders of sex development	21048976	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
prenatal diagnosis	20453657	CNVD
Gastric cancer	16715143	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	20531469	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:1523400-1527800	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:1527800-1530000	Enhancers	Fetal Muscle Leg	muscle
3	chr9:1529600-1530000	Enhancers	Pancreas	Pancrea
4	chr9:1530000-1531200	Weak transcription	Pancreas	Pancrea
5	chr9:1531200-1532600	Enhancers	Pancreas	Pancrea
6	chr9:1531200-1533400	Enhancers	Fetal Muscle Leg	muscle
7	chr9:1531400-1533200	Enhancers	Fetal Stomach	stomach
8	chr9:1532400-1532600	Enhancers	Fetal Muscle Trunk	muscle
9	chr9:1533200-1533400	Enhancers	Fetal Muscle Trunk	muscle
10	chr9:1535400-1537400	Enhancers	GM12878-XiMat	blood
11	chr9:1549400-1558600	Weak transcription	Adipose Nuclei	Adipose
12	chr9:1550600-1551000	Enhancers	Fetal Muscle Leg	muscle
13	chr9:1551000-1553200	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:1553200-1554600	Enhancers	Fetal Muscle Leg	muscle
15	chr9:1553200-1555200	Enhancers	Fetal Lung	lung
16	chr9:1553600-1554000	Enhancers	Fetal Stomach	stomach
17	chr9:1554000-1554600	Enhancers	Fetal Kidney	kidney

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