Variant report

Variant	nsv613206
Chromosome Location	chr9:6525753-6686738
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3676)
CpG islands
(count:916)
Chromatin interactive
region (count:127)
LncRNA
region (count:17)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3676 , 50 per page) page: 1 2 3 4 5 6 7 ... 74

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:6641775-6641951	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:6673778-6673994	HepG2	liver:	n/a	n/a
3	ARID3A	chr9:6585150-6585539	HepG2	liver:	n/a	n/a
4	ARID3A	chr9:6683465-6683727	K562	blood:	n/a	n/a
5	ARID3A	chr9:6530270-6530987	HepG2	liver:	n/a	n/a
6	ARID3A	chr9:6664541-6665413	HepG2	liver:	n/a	n/a
7	ARID3A	chr9:6667619-6667991	HepG2	liver:	n/a	n/a
8	ARID3A	chr9:6680666-6681844	HepG2	liver:	n/a	n/a
9	ARID3A	chr9:6645695-6646211	HepG2	liver:	n/a	n/a
10	ARID3A	chr9:6568252-6568419	K562	blood:	n/a	n/a
11	ARID3A	chr9:6667709-6667966	K562	blood:	n/a	n/a
12	ARID3A	chr9:6592072-6592556	HepG2	liver:	n/a	n/a
13	ARID3A	chr9:6552110-6552393	HepG2	liver:	n/a	n/a
14	ARID3A	chr9:6590416-6591246	HepG2	liver:	n/a	n/a
15	ARID3A	chr9:6585226-6585461	K562	blood:	n/a	n/a
16	ARID3A	chr9:6542871-6542968	HepG2	liver:	n/a	n/a
17	ATF1	chr9:6681148-6681907	K562	blood:	n/a	n/a
18	ATF1	chr9:6594559-6594926	K562	blood:	n/a	n/a
19	ATF1	chr9:6683332-6683728	K562	blood:	n/a	n/a
20	ATF2	chr9:6683034-6683764	GM12878	blood:	n/a	n/a
21	ATF2	chr9:6598244-6598868	GM12878	blood:	n/a	n/a
22	ATF2	chr9:6681171-6681904	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF2	chr9:6680648-6682329	GM12878	blood:	n/a	n/a
24	ATF2	chr9:6680771-6682208	GM12878	blood:	n/a	n/a
25	ATF2	chr9:6620437-6621001	GM12878	blood:	n/a	n/a
26	ATF2	chr9:6654912-6655463	GM12878	blood:	n/a	n/a
27	ATF2	chr9:6683093-6683781	GM12878	blood:	n/a	n/a
28	ATF2	chr9:6630782-6631440	GM12878	blood:	n/a	n/a
29	ATF2	chr9:6632332-6633189	GM12878	blood:	n/a	n/a
30	ATF2	chr9:6597976-6598892	GM12878	blood:	n/a	n/a
31	ATF2	chr9:6654995-6655416	GM12878	blood:	n/a	n/a
32	ATF2	chr9:6680902-6681966	H1-hESC	embryonic stem cell:	n/a	n/a
33	ATF2	chr9:6605130-6605645	GM12878	blood:	n/a	n/a
34	ATF2	chr9:6575185-6575710	GM12878	blood:	n/a	n/a
35	ATF2	chr9:6566455-6566850	GM12878	blood:	n/a	n/a
36	ATF2	chr9:6673244-6673922	GM12878	blood:	n/a	n/a
37	ATF3	chr9:6680937-6681651	GM12878	blood:	n/a	chr9:6681281-6681290 chr9:6681270-6681290
38	ATF3	chr9:6681111-6681416	H1-hESC	embryonic stem cell:	n/a	chr9:6681281-6681290 chr9:6681270-6681290
39	ATF3	chr9:6681561-6681854	K562	blood:	n/a	chr9:6681721-6681741
40	ATF3	chr9:6681128-6681460	HepG2	liver:	n/a	chr9:6681281-6681290 chr9:6681270-6681290
41	ATF3	chr9:6664488-6664934	A549	lung:	n/a	n/a
42	ATF3	chr9:6681099-6681405	GM12878	blood:	n/a	chr9:6681281-6681290 chr9:6681270-6681290
43	ATF3	chr9:6681031-6681807	A549	lung:	n/a	chr9:6681281-6681290 chr9:6681270-6681290 chr9:6681721-6681741
44	ATF3	chr9:6681132-6681923	A549	lung:	n/a	chr9:6681281-6681290 chr9:6681270-6681290 chr9:6681721-6681741
45	ATF3	chr9:6681117-6681516	K562	blood:	n/a	chr9:6681281-6681290 chr9:6681270-6681290
46	ATF3	chr9:6664294-6664873	A549	lung:	n/a	n/a
47	BACH1	chr9:6684511-6684834	H1-hESC	embryonic stem cell:	n/a	n/a
48	BACH1	chr9:6667638-6667964	H1-hESC	embryonic stem cell:	n/a	n/a
49	BACH1	chr9:6644871-6645230	H1-hESC	embryonic stem cell:	n/a	n/a
50	BACH1	chr9:6680705-6681903	H1-hESC	embryonic stem cell:	n/a	n/a

(count:916 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:6681608-6681658	BJ	skin:	n/a
2	chr9:6681608-6681658	BJ	skin:	n/a
3	chr9:6645736-6645786	HAEpiC	amniotic membrane:	n/a
4	chr9:6681415-6681465	PrEC	prostate:	n/a
5	chr9:6532828-6532878	NT2-D1	testis:	n/a
6	chr9:6645686-6645736	Jurkat	blood:	n/a
7	chr9:6645468-6645518	SKMC	muscle:	n/a
8	chr9:6645468-6645518	U87	brain:	n/a
9	chr9:6680800-6680850	Hela-S3	cervix:	n/a
10	chr9:6532828-6532878	HMEC	breast:	n/a
11	chr9:6680800-6680850	AG10803	skin:	n/a
12	chr9:6681559-6681609	SKMC	muscle:	n/a
13	chr9:6644369-6644419	ECC-1	luminal epithelium:	n/a
14	chr9:6644369-6644419	Hela-S3	cervix:	n/a
15	chr9:6680923-6680973	NHDF-neo	bronchial:	n/a
16	chr9:6680800-6680850	CMK	blood:	n/a
17	chr9:6680923-6680973	A549	lung:	n/a
18	chr9:6681608-6681658	HCT-116	colon:	n/a
19	chr9:6680932-6680982	HIPEpiC	eye:	n/a
20	chr9:6646386-6646436	PrEC	prostate:	n/a
21	chr9:6683274-6683324	AG04450	lung:	fetal
22	chr9:6644369-6644419	U87	brain:	n/a
23	chr9:6645468-6645518	NHBE	bronchial:	n/a
24	chr9:6680800-6680850	Caco-2	colon:	n/a
25	chr9:6645736-6645786	SAEC	small airway:	n/a
26	chr9:6644369-6644419	NHDF-neo	bronchial:	n/a
27	chr9:6552115-6552165	HMEC	breast:	n/a
28	chr9:6645468-6645518	GM12878	blood:	n/a
29	chr9:6681608-6681658	GM19239	blood:	n/a
30	chr9:6680923-6680973	AG04450	lung:	fetal
31	chr9:6644603-6644653	HAEpiC	amniotic membrane:	n/a
32	chr9:6645686-6645736	HRE	kidney:	n/a
33	chr9:6645686-6645736	HRCEpiC	kidney:	n/a
34	chr9:6680932-6680982	Jurkat	blood:	n/a
35	chr9:6681559-6681609	SK-N-SH	brain:	n/a
36	chr9:6552115-6552165	NHBE	bronchial:	n/a
37	chr9:6681415-6681465	GM06990	blood:	n/a
38	chr9:6681608-6681658	HNPCEpiC	eye:	n/a
39	chr9:6681608-6681658	HIPEpiC	eye:	n/a
40	chr9:6680800-6680850	HIPEpiC	eye:	n/a
41	chr9:6681608-6681658	NB4	blood:	n/a
42	chr9:6680932-6680982	HRE	kidney:	n/a
43	chr9:6681559-6681609	Hela-S3	cervix:	n/a
44	chr9:6683274-6683324	MCF10A-Er-Src	breast:	n/a
45	chr9:6552115-6552165	U87	brain:	n/a
46	chr9:6680923-6680973	Hepatocyte	liver:	n/a
47	chr9:6644603-6644653	Jurkat	blood:	n/a
48	chr9:6552115-6552165	HUVEC	blood vessel:	n/a
49	chr9:6532828-6532878	H1-hESC	embryonic stem cell:	embryo
50	chr9:6681415-6681465	HEK293	kidney:	embryo

(count:127 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr9:6641084..6643158-chr9:6652442..6654682,2	MCF-7	breast:
2	chr9:6671740..6675372-chr9:6679558..6683814,6	MCF-7	breast:
3	chr9:6679611..6682734-chr9:6683304..6686457,4	MCF-7	breast:
4	chr9:6682207..6684667-chr9:6707689..6709841,2	K562	blood:
5	chr9:6674752..6678702-chr9:6679022..6682873,7	K562	blood:
6	chr11:118991755..118992281-chr9:6681143..6681754,2	NB4	blood:
7	chr9:6679734..6682958-chr9:6730915..6733550,3	MCF-7	breast:
8	chr9:6661026..6667542-chr9:6678514..6683695,9	MCF-7	breast:
9	chr9:6570923..6573857-chr9:6574160..6576030,2	K562	blood:
10	chr9:6588736..6590830-chr9:6680231..6682699,2	MCF-7	breast:
11	chr9:6639721..6642651-chr9:6680043..6682884,2	MCF-7	breast:
12	chr9:6685128..6687481-chr9:6715768..6718010,2	MCF-7	breast:
13	chr9:6669357..6672334-chr9:6679173..6682127,3	MCF-7	breast:
14	chr9:6680639..6682955-chr9:6686831..6689135,2	MCF-7	breast:
15	chr9:6662765..6664429-chr9:6666367..6668579,2	MCF-7	breast:
16	chr9:6656639..6659482-chr9:6662780..6664665,3	MCF-7	breast:
17	chr9:6654607..6656764-chr9:6663214..6664911,2	K562	blood:
18	chr1:224575474..224576206-chr9:6680757..6681693,2	NB4	blood:
19	chr9:6593764..6596429-chr9:6597405..6599828,2	MCF-7	breast:
20	chr5:122758681..122759560-chr9:6680956..6681952,3	NB4	blood:
21	chr9:6679678..6684692-chr9:6754924..6762822,14	K562	blood:
22	chr9:6639721..6642651-chr9:6680043..6682884,2	MCF-7	breast:
23	chr9:6679508..6683848-chr9:6755336..6760985,13	K562	blood:
24	chr9:6672368..6674682-chr9:6676645..6678823,3	MCF-7	breast:
25	chr9:6644301..6646741-chr9:6667847..6669482,2	MCF-7	breast:
26	chr9:6354258..6354771-chr9:6567896..6568668,2	MCF-7	breast:
27	chr9:6584834..6585802-chr9:6667386..6668426,5	MCF-7	breast:
28	chr9:6680283..6682960-chr9:6684797..6686808,2	MCF-7	breast:
29	chr9:6410972..6413613-chr9:6564070..6565701,2	MCF-7	breast:
30	chr9:6550978..6552657-chr9:6561789..6563568,2	K562	blood:
31	chr9:6680669..6682912-chr9:6702581..6705387,2	MCF-7	breast:
32	chr9:6623651..6625727-chr9:6679924..6681530,2	MCF-7	breast:
33	chr9:6624229..6626158-chr9:6679853..6681433,2	MCF-7	breast:
34	chr9:6674523..6677794-chr9:6679022..6682789,5	K562	blood:
35	chr2:192542408..192543057-chr9:6680954..6681934,2	NB4	blood:
36	chr9:6663663..6666675-chr9:6715678..6718421,3	MCF-7	breast:
37	chr16:2524772..2525666-chr9:6680779..6681752,2	NB4	blood:
38	chr9:6683289..6684884-chr9:6702645..6704262,2	MCF-7	breast:
39	chr18:3449980..3450637-chr9:6680800..6681639,2	NB4	blood:
40	chr9:6663029..6667664-chr9:6679639..6683357,9	MCF-7	breast:
41	chr9:6662765..6664429-chr9:6666367..6668579,2	MCF-7	breast:
42	chr9:6654607..6656764-chr9:6663214..6664911,2	K562	blood:
43	chr9:6681100..6681879-chrX:153626091..153627039,2	NB4	blood:
44	chr9:6680768..6683764-chr9:6756005..6759658,4	MCF-7	breast:
45	chr9:6680896..6681724-chr9:86535475..86536351,2	HCT-116	colon:
46	chr9:6627812..6629680-chr9:6632614..6635740,3	MCF-7	breast:
47	chr9:6686168..6688293-chr9:6706461..6708275,2	MCF-7	breast:
48	chr9:6680283..6682960-chr9:6684797..6686808,2	MCF-7	breast:
49	chr9:5627146..5630018-chr9:6679826..6681382,2	K562	blood:
50	chr9:6640659..6642824-chr9:6643049..6645706,2	MCF-7	breast:

(count:17 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KDM4C-14	chr9:6661783-6661845	NONHSAT130146
2	lnc-UHRF2-4	chr9:6542094-6542350	NONHSAT130139
3	lnc-KDM4C-12	chr9:6675284-6675614	NONHSAT130149
4	lnc-KDM4C-5	chr9:6669544-6669728	ENSG00000236924.1
5	lnc-KDM4C-13	chr9:6662424-6662810	NONHSAT130148
6	lnc-KDM4C-5	chr9:6645956-6646085	ENSG00000236924.1
7	lnc-KDM4C-5	chr9:6670425-6670690	NONHSAT130145
8	lnc-KDM4C-14	chr9:6661651-6661936	NONHSAT130147
9	lnc-UHRF2-3	chr9:6529539-6529917	NONHSAT130138
10	lnc-KDM4C-14	chr9:6661291-6661345	NONHSAT130146
11	lnc-KDM4C-5	chr9:6670425-6670635	ENSG00000236924.1
12	lnc-KDM4C-5	chr9:6645882-6646085	NONHSAT130145
13	lnc-KDM4C-14	chr9:6660407-6661044	NONHSAT130146
14	lnc-KDM4C-13	chr9:6663156-6663366	NONHSAT130148
15	lnc-KDM4C-13	chr9:6663657-6663792	NONHSAT130148
16	lnc-UHRF2-5	chr9:6568844-6569360	NONHSAT130143
17	lnc-KDM4C-5	chr9:6669544-6669728	NONHSAT130145

No data

Variant related genes	Relation type
ENSG00000236924	TF binding region
RNF2P1	TF binding region
ENSG00000252110	TF binding region
RN7SL123P	TF binding region
ENSG00000237158	TF binding region
RN7SL25P	TF binding region
ENSG00000232946	TF binding region
ENSG00000206147	TF binding region
ENSG00000229057	TF binding region
GLDC	TF binding region
ENSG00000236924	CpG island
RNF2P1	CpG island
ENSG00000252110	CpG island
RN7SL123P	CpG island
ENSG00000237158	CpG island
RN7SL25P	CpG island
ENSG00000232946	CpG island
ENSG00000206147	CpG island
ENSG00000229057	CpG island
GLDC	CpG island
ENSG00000232946	chromatin interactions
ENSG00000229057	chromatin interactions
ENSG00000102786	chromatin interactions
ENSG00000132259	chromatin interactions
ENSG00000065357	chromatin interactions
ENSG00000105327	chromatin interactions
ENSG00000266863	chromatin interactions
ENSG00000229611	chromatin interactions
ENSG00000150756	chromatin interactions
ENSG00000272426	chromatin interactions
ENSG00000150768	chromatin interactions
ENSG00000273382	chromatin interactions
ENSG00000177426	chromatin interactions
ENSG00000105372	chromatin interactions
ENSG00000147403	chromatin interactions
ENSG00000170037	chromatin interactions
ENSG00000170043	chromatin interactions
ENSG00000051009	chromatin interactions
ENSG00000079999	chromatin interactions
ENSG00000236778	chromatin interactions
ENSG00000206147	chromatin interactions
ENSG00000200156	chromatin interactions
ENSG00000173559	chromatin interactions
ENSG00000101220	chromatin interactions
ENSG00000107077	chromatin interactions
ENSG00000170473	chromatin interactions
ENSG00000170265	chromatin interactions
ENSG00000215717	chromatin interactions
ENSG00000117308	chromatin interactions
ENSG00000161847	chromatin interactions
ENSG00000252110	chromatin interactions
ENSG00000162065	chromatin interactions
ENSG00000197323	chromatin interactions
ENSG00000273355	chromatin interactions
ENSG00000134602	chromatin interactions
ENSG00000072210	chromatin interactions
ENSG00000168944	chromatin interactions
ENSG00000225489	chromatin interactions
ENSG00000236924	chromatin interactions
ENSG00000160271	chromatin interactions
ENSG00000165115	chromatin interactions
ENSG00000237158	chromatin interactions
ENSG00000107036	chromatin interactions
ENSG00000178445	chromatin interactions
ENSG00000147854	chromatin interactions
ENSG00000231381	chromatin interactions
ENSG00000150753	chromatin interactions

Extended variants
information (count: 9118 )
Associated
traits (count: 110 )

Variant overlapped rSNPs/rCNVs (count:9118 , 50 per page) page: 1 2 3 4 5 6 7 ... 183

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11795213	chr9:6525753-6525754	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs536142848	chr9:6525767-6525768	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs534051791	chr9:6525768-6525769	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs35833230	chr9:6525769-6525770	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs558593194	chr9:6525803-6525804	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs576750579	chr9:6525828-6525829	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs573540754	chr9:6525847-6525848	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs183590440	chr9:6525866-6525867	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs574240956	chr9:6525867-6525868	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs143602844	chr9:6525929-6525930	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs560274780	chr9:6525946-6525947	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs371647942	chr9:6525982-6525983	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs527899015	chr9:6525999-6526000	Weak transcription Enhancers Flanking Active TSS Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs546445103	chr9:6526019-6526020	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs374335942	chr9:6526070-6526071	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs531714619	chr9:6526080-6526081	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs145726095	chr9:6526082-6526083	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs550238397	chr9:6526164-6526165	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs568562602	chr9:6526173-6526174	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs144458272	chr9:6526192-6526193	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs529358599	chr9:6526202-6526203	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs547919938	chr9:6526283-6526284	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs566625720	chr9:6526331-6526332	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs34775285	chr9:6526333-6526334	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs568488771	chr9:6526338-6526339	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs558799741	chr9:6526341-6526342	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs570694908	chr9:6526361-6526362	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs12552173	chr9:6526365-6526366	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs537444071	chr9:6526371-6526372	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs77456967	chr9:6526399-6526400	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs533658630	chr9:6526425-6526426	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs10114364	chr9:6526452-6526453	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs574102280	chr9:6526458-6526459	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs140635764	chr9:6526468-6526469	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs199710894	chr9:6526474-6526475	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs71487849	chr9:6526517-6526518	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs373920653	chr9:6526531-6526532	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs200990697	chr9:6526580-6526581	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs187089462	chr9:6526590-6526591	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs572581499	chr9:6526602-6526603	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs546117836	chr9:6526612-6526613	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs564793994	chr9:6526618-6526619	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs553312538	chr9:6526654-6526655	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs112850470	chr9:6526661-6526662	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs544133014	chr9:6526720-6526721	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs191897743	chr9:6526729-6526730	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs529321446	chr9:6526742-6526743	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs566693750	chr9:6526778-6526779	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs201859362	chr9:6526797-6526798	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs538918141	chr9:6526806-6526807	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:110)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Metastatic melanoma	18483359	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	16783165	CNVD
Dyslexia	22102821	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Ependymoma	20639864	CNVD
Medullary thyroid carcinoma	18765511	CNVD
Schizophrenia	21346763	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:2803 , 50 per page) page: 1 2 3 4 5 6 7 ... 57

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6498800-6554400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:6499000-6528400	Weak transcription	Pancreas	Pancrea
3	chr9:6506400-6530600	Weak transcription	Gastric	stomach
4	chr9:6507000-6534400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:6508400-6526400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:6508400-6526600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr9:6508400-6528200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:6508400-6530600	Weak transcription	Left Ventricle	heart
9	chr9:6508600-6537800	Weak transcription	HMEC	breast
10	chr9:6508600-6538200	Weak transcription	NHEK	skin
11	chr9:6508800-6526600	Weak transcription	HSMM	muscle
12	chr9:6509800-6530200	Weak transcription	A549	lung
13	chr9:6510400-6558800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:6510600-6543000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:6511400-6526800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:6512200-6528800	Weak transcription	NHLF	lung
17	chr9:6517600-6528000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:6518000-6526000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:6518000-6530400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:6518200-6526000	Weak transcription	Fetal Thymus	thymus
21	chr9:6522000-6528400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:6522000-6549200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:6522400-6530400	Weak transcription	NHDF-Ad	bronchial
24	chr9:6522400-6531600	Weak transcription	GM12878-XiMat	blood
25	chr9:6522600-6526000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr9:6523000-6538400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:6523200-6526600	Weak transcription	Primary B cells from cord blood	blood
28	chr9:6523200-6526600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr9:6523400-6532200	Weak transcription	Aorta	Aorta
30	chr9:6523600-6529600	Weak transcription	Liver	Liver
31	chr9:6523600-6530400	Weak transcription	HUVEC	blood vessel
32	chr9:6523800-6527200	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr9:6524000-6530400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:6525000-6526000	Genic enhancers	Muscle Satellite Cultured Cells	--
35	chr9:6525000-6526000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:6525000-6526000	Enhancers	NH-A	brain
37	chr9:6525000-6526000	Enhancers	Osteobl	bone
38	chr9:6525000-6526200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:6525000-6526200	Enhancers	HSMMtube	muscle
40	chr9:6525000-6526400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:6525000-6527000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:6525000-6527200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:6525200-6526200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:6525400-6525800	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr9:6525400-6530400	Weak transcription	Ovary	ovary
46	chr9:6525600-6526000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr9:6525600-6526200	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr9:6525600-6527400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr9:6525600-6529600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr9:6525800-6526400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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