Variant report

Variant	nsv6208
Chromosome Location	chr8:58345211-58389888
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM110B-4	chr8:58375465-58375636	NONHSAT126755
2	lnc-FAM110B-4	chr8:58375466-58375636	XLOC_006808
3	lnc-FAM110B-11	chr8:58352607-58353048	l_3603_chr8:58348578-58353048_testes
4	lnc-FAM110B-11	chr8:58348579-58351315	l_3603_chr8:58348578-58353048_testes

Extended variants
information (count: 1600 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:1600 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs72654823	chr8:58348595-58348596	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs568157276	chr8:58348640-58348641	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs2325653	chr8:58348692-58348693	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs182078054	chr8:58348775-58348776	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs576547939	chr8:58348782-58348783	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs113667089	chr8:58348803-58348804	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs12156322	chr8:58348855-58348856	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs545795411	chr8:58348863-58348864	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs36029122	chr8:58348888-58348889	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs370670994	chr8:58348892-58348893	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs542058505	chr8:58348896-58348897	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs59991105	chr8:58348908-58348909	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs374106274	chr8:58348943-58348944	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs145665356	chr8:58348946-58348947	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs574895495	chr8:58348962-58348963	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs540331531	chr8:58348969-58348970	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs36037881	chr8:58348970-58348971	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs532397197	chr8:58348978-58348979	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs10106326	chr8:58348997-58348998	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs563997219	chr8:58349060-58349061	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs562883819	chr8:58349092-58349093	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs73593755	chr8:58349097-58349098	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs548396826	chr8:58349098-58349099	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs568526489	chr8:58349113-58349114	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs534389832	chr8:58349156-58349157	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs547205252	chr8:58349165-58349166	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs532865261	chr8:58349240-58349241	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs2325654	chr8:58349268-58349269	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs2325655	chr8:58349276-58349277	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs58465799	chr8:58349347-58349348	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs187149034	chr8:58349371-58349372	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs562933409	chr8:58349393-58349394	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs59264018	chr8:58349412-58349413	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs576411319	chr8:58349431-58349432	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs147657217	chr8:58349435-58349436	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs58202912	chr8:58349448-58349449	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs192018844	chr8:58349454-58349455	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs2325656	chr8:58349476-58349477	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs541196979	chr8:58349503-58349504	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs560427771	chr8:58349509-58349510	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs6996624	chr8:58349511-58349512	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs142338182	chr8:58349562-58349563	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs60849174	chr8:58349565-58349566	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs57380913	chr8:58349567-58349568	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs62514797	chr8:58349584-58349585	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs111912625	chr8:58349592-58349593	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs531221019	chr8:58349610-58349611	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs77877833	chr8:58349628-58349629	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs34115270	chr8:58349630-58349631	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs7827339	chr8:58349655-58349656	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Colorectal cancer	21645411	CNVD
Melanoma	22183965	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:129 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58350400-58352400	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr8:58351000-58352200	Enhancers	Liver	Liver
3	chr8:58351400-58351600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:58351800-58353000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr8:58352400-58352800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:58352800-58353600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr8:58353000-58364400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr8:58353200-58354200	Enhancers	Fetal Lung	lung
9	chr8:58353400-58354000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:58353400-58354600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:58353400-58354800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr8:58353600-58354000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr8:58354000-58354200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr8:58354200-58354800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr8:58354800-58355400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr8:58354800-58356400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr8:58354800-58359800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr8:58355200-58355400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr8:58356400-58357000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr8:58357000-58357600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr8:58357600-58358400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr8:58358400-58360400	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr8:58359200-58359600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr8:58359800-58362200	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr8:58360000-58361000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr8:58360000-58361200	Enhancers	GM12878-XiMat	blood
27	chr8:58360400-58361000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr8:58360600-58361000	Enhancers	Primary B cells from cord blood	blood
29	chr8:58360600-58361000	Enhancers	Spleen	Spleen
30	chr8:58361000-58361400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr8:58361000-58362400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr8:58361200-58361600	Weak transcription	GM12878-XiMat	blood
33	chr8:58361400-58361800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr8:58361600-58362000	Enhancers	GM12878-XiMat	blood
35	chr8:58361600-58362200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:58361800-58362000	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr8:58362000-58362800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr8:58362200-58368000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:58362600-58362800	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr8:58362600-58363200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:58362800-58364400	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr8:58363000-58364000	Enhancers	Fetal Lung	lung
43	chr8:58363200-58370000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr8:58364000-58365000	Weak transcription	Fetal Lung	lung
45	chr8:58365200-58365400	Enhancers	Fetal Lung	lung
46	chr8:58366800-58370000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr8:58367800-58370200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:58368000-58368600	Enhancers	Muscle Satellite Cultured Cells	--
49	chr8:58368000-58368600	Enhancers	HSMM	muscle
50	chr8:58368000-58369000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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