Variant report

Variant	nsv822488
Chromosome Location	chr4:10709164-10784711
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:15)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:10755307..10757742-chr4:10758971..10761170,2	K562	blood:
2	chr4:10756345..10760061-chr4:10764457..10766284,3	MCF-7	breast:
3	chr4:10120346..10122071-chr4:10783813..10786571,2	MCF-7	breast:
4	chr4:10731672..10733412-chr4:10734355..10736990,2	MCF-7	breast:
5	chr4:10624055..10624663-chr4:10717565..10718180,2	MCF-7	breast:
6	chr4:10756345..10760061-chr4:10764457..10766284,3	MCF-7	breast:
7	chr4:10731672..10733412-chr4:10734355..10736990,2	MCF-7	breast:
8	chr4:10755307..10757742-chr4:10758971..10761170,2	K562	blood:

(count:15 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DRD5-7	chr4:10760725-10760877	XLOC_003454
2	lnc-DRD5-6	chr4:10743562-10743714	XLOC_003453
3	lnc-DRD5-6	chr4:10750796-10751199	NONHSAT095512
4	lnc-DRD5-6	chr4:10739199-10739401	XLOC_003453
5	lnc-DRD5-6	chr4:10750796-10751216	XLOC_003453
6	lnc-DRD5-6	chr4:10739199-10739401	XLOC_003453
7	lnc-DRD5-6	chr4:10750796-10751209	XLOC_003453
8	lnc-DRD5-6	chr4:10739215-10739401	XLOC_003453
9	lnc-DRD5-6	chr4:10750796-10751216	XLOC_003453
10	lnc-DRD5-6	chr4:10739730-10740173	XLOC_003453
11	lnc-DRD5-6	chr4:10743569-10743714	XLOC_003453
12	lnc-DRD5-6	chr4:10739242-10739401	NONHSAT095512
13	lnc-DRD5-6	chr4:10739730-10740173	XLOC_003453
14	lnc-DRD5-6	chr4:10739730-10740173	XLOC_003453
15	lnc-DRD5-6	chr4:10743569-10743736	XLOC_003453

No data

Variant related genes	Relation type
CDK1	miRNA target sites
GNS	miRNA target sites
CDH11	miRNA target sites
SLC7A9	miRNA target sites
LDLRAP1	miRNA target sites
ACOT11	miRNA target sites
MTHFSD	miRNA target sites
HTATIP2	miRNA target sites

Extended variants
information (count: 2791 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:2791 , 50 per page) page: 1 2 3 4 5 6 7 ... 56

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534087011	chr4:10709180-10709181	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs6848514	chr4:10709188-10709189	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs148173924	chr4:10709203-10709204	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs182844820	chr4:10709206-10709207	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs185696591	chr4:10709214-10709215	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs577967329	chr4:10709226-10709227	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs191282211	chr4:10709299-10709300	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs6831973	chr4:10709366-10709367	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs572270396	chr4:10709395-10709396	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs542812812	chr4:10709396-10709397	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs561255545	chr4:10709437-10709438	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs576295501	chr4:10709445-10709446	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs543681654	chr4:10709449-10709450	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs564776608	chr4:10709501-10709502	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs531973316	chr4:10709511-10709512	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs547100167	chr4:10709528-10709529	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs558977146	chr4:10709543-10709544	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs183146312	chr4:10709550-10709551	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs549345565	chr4:10709559-10709560	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs16872451	chr4:10709589-10709590	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs150606001	chr4:10709596-10709597	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs550439299	chr4:10709622-10709623	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs73103780	chr4:10709623-10709624	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs369200217	chr4:10709630-10709631	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs16872454	chr4:10709677-10709678	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs78268505	chr4:10709709-10709710	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs11734235	chr4:10709723-10709724	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
28	rs11729055	chr4:10709726-10709727	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs187719195	chr4:10709739-10709740	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs78699511	chr4:10709748-10709749	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs375933401	chr4:10709776-10709777	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs11733408	chr4:10709812-10709813	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
33	rs552272508	chr4:10709814-10709815	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs575300302	chr4:10709833-10709834	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs28592761	chr4:10709851-10709852	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs546621062	chr4:10709857-10709858	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs559038074	chr4:10709940-10709941	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs529767198	chr4:10709947-10709948	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs28589408	chr4:10709997-10709998	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs143059232	chr4:10710004-10710005	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs370354415	chr4:10710009-10710010	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs550208384	chr4:10710020-10710021	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs192652607	chr4:10710071-10710072	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs184088792	chr4:10710080-10710081	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs61794304	chr4:10710103-10710104	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs566060578	chr4:10710114-10710115	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs28672725	chr4:10710147-10710148	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs147495263	chr4:10710172-10710173	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs376053425	chr4:10710225-10710226	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs529388285	chr4:10710231-10710232	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Colorectal cancer	16272173	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21509527	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Schizophrenia	22241247	CNVD
Autosomal-dominant microtia	18179897	CNVD
Glioma	17123091	CNVD
Colorectal cancer	20459617	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:322 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10706600-10710400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:10707000-10710800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:10708600-10712400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:10708600-10714400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:10712400-10715600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr4:10712800-10713000	Enhancers	Colon Smooth Muscle	Colon
7	chr4:10713200-10713800	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:10713800-10714000	Enhancers	Colon Smooth Muscle	Colon
9	chr4:10714400-10715400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
10	chr4:10715000-10717600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:10715200-10715600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:10715200-10716400	Enhancers	Fetal Brain Male	brain
13	chr4:10715400-10715800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:10715400-10716800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:10715600-10716800	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr4:10715600-10717000	Enhancers	Fetal Brain Female	brain
17	chr4:10715800-10717200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:10716400-10717600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr4:10716800-10717200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr4:10716800-10717600	Enhancers	Thymus	Thymus
21	chr4:10716800-10718000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr4:10716800-10719000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:10717200-10718000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr4:10717200-10719000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr4:10717400-10717600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:10717400-10717800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr4:10717400-10717800	Enhancers	Primary hematopoietic stem cells	blood
28	chr4:10717400-10717800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:10717400-10718000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:10717400-10718000	Enhancers	NH-A	brain
31	chr4:10717600-10718200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr4:10718000-10718400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr4:10718400-10719000	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr4:10718600-10719000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr4:10719000-10722800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr4:10719000-10726200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr4:10721800-10722000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr4:10722000-10725800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr4:10722800-10723400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr4:10723000-10723400	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr4:10723400-10723600	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr4:10723400-10724000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr4:10723400-10724200	ZNF genes & repeats	GM12878-XiMat	blood
44	chr4:10723600-10724200	Enhancers	Stomach Mucosa	stomach
45	chr4:10723600-10725200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr4:10723600-10725800	Enhancers	Primary B cells from peripheral blood	blood
47	chr4:10724000-10724200	Enhancers	Primary T cells from cord blood	blood
48	chr4:10724000-10724400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr4:10724200-10725000	Flanking Active TSS	GM12878-XiMat	blood
50	chr4:10724200-10725400	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links