Variant report

Variant	nsv830858
Chromosome Location	chr6:164296054-164455743
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:68)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:68 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:163745999..163746681-chr6:164406770..164407469,2	MCF-7	breast:
2	chr6:164386071..164388210-chr6:164391246..164393203,2	K562	blood:
3	chr6:164327127..164329081-chr6:164330686..164332999,2	K562	blood:
4	chr6:164309965..164312947-chr6:164313018..164314992,2	K562	blood:
5	chr6:164376263..164380989-chr6:164381516..164384379,4	K562	blood:
6	chr6:164319743..164322361-chr6:164322786..164324290,2	K562	blood:
7	chr6:164343227..164345603-chr6:164348323..164350714,2	K562	blood:
8	chr6:164336457..164337059-chr6:164377343..164378061,2	MCF-7	breast:
9	chr6:163848750..163849490-chr6:164377354..164378030,2	K562	blood:
10	chr6:164323514..164326132-chr6:164328284..164330340,2	K562	blood:
11	chr6:164319743..164322361-chr6:164322786..164324290,2	K562	blood:
12	chr6:164336119..164338319-chr6:164341557..164344193,2	MCF-7	breast:
13	chr6:164372000..164374794-chr6:164375740..164377936,2	K562	blood:
14	chr6:164327127..164329081-chr6:164330686..164332999,2	K562	blood:
15	chr6:163832712..163834333-chr6:164408971..164410917,2	K562	blood:
16	chr6:164381856..164383479-chr6:164383621..164386406,2	K562	blood:
17	chr6:164386071..164388210-chr6:164391246..164393203,2	K562	blood:
18	chr6:164372000..164374794-chr6:164375740..164377936,2	K562	blood:
19	chr6:164417451..164422363-chr6:164423691..164426139,5	K562	blood:
20	chr6:164301027..164303711-chr6:164315127..164317432,2	K562	blood:
21	chr6:164381856..164383479-chr6:164383621..164386406,2	K562	blood:
22	chr6:164346341..164348604-chr6:164378423..164380114,2	K562	blood:
23	chr6:164439488..164441504-chr6:164445154..164447554,2	K562	blood:
24	chr6:164441188..164443063-chr6:164529123..164531382,2	K562	blood:
25	chr6:164418688..164420787-chr6:164424639..164426387,2	K562	blood:
26	chr6:164290619..164291550-chr6:164306342..164306918,2	K562	blood:
27	chr6:164444664..164447079-chr6:164450112..164453288,3	K562	blood:
28	chr6:164330623..164332943-chr6:164333966..164336769,2	K562	blood:
29	chr6:164336457..164337059-chr6:164377343..164378061,2	MCF-7	breast:
30	chr6:164346341..164348604-chr6:164378423..164380114,2	K562	blood:
31	chr6:164376263..164380989-chr6:164381516..164384379,4	K562	blood:
32	chr6:164330623..164332943-chr6:164333966..164336769,2	K562	blood:
33	chr6:164418514..164421393-chr6:164426522..164428198,2	K562	blood:
34	chr6:164330927..164331854-chr6:164356162..164356798,2	K562	blood:
35	chr6:164330623..164332128-chr6:164335049..164336769,2	K562	blood:
36	chr6:164389860..164391370-chr6:164393128..164395944,2	K562	blood:
37	chr6:164285706..164289029-chr6:164295811..164300012,3	K562	blood:
38	chr6:164444664..164447079-chr6:164450112..164453288,3	K562	blood:
39	chr6:164130686..164133462-chr6:164319351..164322024,2	K562	blood:
40	chr6:164319581..164321421-chr6:164323668..164325756,2	MCF-7	breast:
41	chr6:164350362..164351949-chr6:164353755..164356177,2	K562	blood:
42	chr6:164323514..164326132-chr6:164328284..164330340,2	K562	blood:
43	chr6:164372119..164374794-chr6:164375081..164377936,2	K562	blood:
44	chr6:164417451..164422363-chr6:164423691..164426139,5	K562	blood:
45	chr6:163833857..163837025-chr6:164376036..164378229,3	K562	blood:
46	chr6:164291137..164293933-chr6:164296625..164298469,2	K562	blood:
47	chr6:164319581..164321421-chr6:164323668..164325756,2	MCF-7	breast:
48	chr6:164419222..164421282-chr6:164425431..164427896,2	MCF-7	breast:
49	chr6:164445952..164448558-chr6:164471088..164472960,2	K562	blood:
50	chr6:164419222..164421282-chr6:164425431..164427896,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-QKI-3	chr6:164429556-164429693	XLOC_005532
2	lnc-QKI-3	chr6:164348098-164348195	XLOC_005532
3	lnc-AL078585.1-20	chr6:164449642-164449783	NONHSAT115980
4	lnc-AL078585.1-20	chr6:164450411-164450716	NONHSAT115980

No data

Variant related genes	Relation type
ENSG00000112531	chromatin interactions
ENSG00000230627	chromatin interactions
ENSG00000270419	chromatin interactions
INSIG1	miRNA target sites

Extended variants
information (count: 6480 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:6480 , 50 per page) page: 1 2 3 4 5 6 7 ... 130

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192227055	chr6:164296056-164296057	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs112310056	chr6:164296061-164296062	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs559839424	chr6:164296095-164296096	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs564809500	chr6:164296131-164296132	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs551841757	chr6:164296139-164296140	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs149472820	chr6:164296173-164296174	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs531121685	chr6:164296175-164296176	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs144347081	chr6:164296205-164296206	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs567899659	chr6:164296206-164296207	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs35844924	chr6:164296220-164296221	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs577938979	chr6:164296224-164296225	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs113807867	chr6:164296232-164296233	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs148763425	chr6:164296280-164296281	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs566856684	chr6:164296282-164296283	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs539164072	chr6:164296286-164296287	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs539387858	chr6:164296314-164296315	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs184672807	chr6:164296318-164296319	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs544354091	chr6:164296339-164296340	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs369151093	chr6:164296353-164296354	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs111424291	chr6:164296368-164296369	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs143347834	chr6:164296377-164296378	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs539860111	chr6:164296422-164296423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs532201938	chr6:164296426-164296427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs533655145	chr6:164296487-164296488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs189477670	chr6:164296501-164296502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs545543467	chr6:164296554-164296555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs562560027	chr6:164296573-164296574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs531014083	chr6:164296600-164296601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs147532875	chr6:164296601-164296602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs193003904	chr6:164296612-164296613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs530450299	chr6:164296628-164296629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs547291917	chr6:164296684-164296685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs184310903	chr6:164296709-164296710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs145348815	chr6:164296710-164296711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs151024468	chr6:164296735-164296736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs550514704	chr6:164296737-164296738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs569288367	chr6:164296739-164296740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs55876109	chr6:164296744-164296745	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs554717860	chr6:164296788-164296789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs113074700	chr6:164296789-164296790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs189493415	chr6:164296794-164296795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs553650867	chr6:164296832-164296833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs576436665	chr6:164296833-164296834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs545734570	chr6:164296835-164296836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs113256665	chr6:164296868-164296869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs576051720	chr6:164296879-164296880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs112667135	chr6:164296918-164296919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs201741581	chr6:164296934-164296935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs77035052	chr6:164296955-164296956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs55717394	chr6:164297015-164297016	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Ovarian cancer	21720365	CNVD
Glioblastoma multiforme	21138945	CNVD
Ovarian cancer	22355333	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD

Chromatin state (count:1490 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164289200-164298000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:164294200-164296200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:164295800-164296400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:164297400-164297800	Enhancers	NH-A	brain
5	chr6:164298000-164298200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:164298200-164300400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:164298800-164300000	Enhancers	Fetal Muscle Leg	muscle
8	chr6:164299000-164299200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:164299000-164299400	Enhancers	Psoas Muscle	Psoas
10	chr6:164299000-164299600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr6:164299200-164300000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr6:164299400-164299800	Active TSS	Psoas Muscle	Psoas
13	chr6:164299600-164300000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr6:164299800-164300800	Enhancers	Psoas Muscle	Psoas
15	chr6:164300000-164300200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr6:164300000-164300600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr6:164300600-164300800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:164305000-164305200	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr6:164305200-164305600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr6:164305200-164305600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr6:164305600-164305800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:164306600-164307200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:164307000-164308200	Enhancers	Fetal Brain Male	brain
24	chr6:164308400-164309200	Enhancers	GM12878-XiMat	blood
25	chr6:164308600-164309400	Enhancers	Primary B cells from peripheral blood	blood
26	chr6:164317600-164319200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:164317800-164318400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr6:164317800-164318400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:164317800-164318600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:164318000-164318400	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr6:164318000-164318400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr6:164318000-164318400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:164318000-164318400	Enhancers	Muscle Satellite Cultured Cells	--
34	chr6:164318000-164318600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr6:164318200-164318400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:164318400-164321800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr6:164318400-164322000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:164318600-164321600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:164321200-164322400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr6:164321400-164321600	Bivalent Enhancer	K562	blood
41	chr6:164321400-164321800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:164321400-164322000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:164321400-164322200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:164321400-164322400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:164321600-164322000	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr6:164321600-164322200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:164321600-164322400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:164321600-164322600	Enhancers	H1 Cell Line	embryonic stem cell
49	chr6:164321800-164322200	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr6:164321800-164322200	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links