Variant report

Variant	nsv832232
Chromosome Location	chr11:93401314-93549438
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3702)
CpG islands
(count:3726)
Chromatin interactive
region (count:226)
LncRNA
region (count:64)
Mature miRNA
region (count: 2)
miRNA target
sites (count:1)

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No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:93473093-93473293	HepG2	liver:	n/a	n/a
2	ARID3A	chr11:93451383-93451881	K562	blood:	n/a	n/a
3	ARID3A	chr11:93503574-93503579	K562	blood:	n/a	n/a
4	ARID3A	chr11:93503557-93503724	HepG2	liver:	n/a	n/a
5	ARID3A	chr11:93478046-93478246	HepG2	liver:	n/a	n/a
6	ARID3A	chr11:93498580-93498745	HepG2	liver:	n/a	n/a
7	ARID3A	chr11:93506317-93506498	HepG2	liver:	n/a	n/a
8	ARID3A	chr11:93473028-93473306	K562	blood:	n/a	n/a
9	ARID3A	chr11:93470943-93471548	K562	blood:	n/a	n/a
10	ARID3A	chr11:93473641-93475015	K562	blood:	n/a	n/a
11	ATF1	chr11:93474490-93474971	K562	blood:	n/a	n/a
12	ATF1	chr11:93517258-93517567	K562	blood:	n/a	n/a
13	ATF1	chr11:93451338-93451794	K562	blood:	n/a	n/a
14	ATF2	chr11:93451344-93451779	GM12878	blood:	n/a	n/a
15	ATF2	chr11:93470722-93471420	H1-hESC	embryonic stem cell:	n/a	n/a
16	ATF2	chr11:93461867-93462836	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF2	chr11:93462916-93463410	H1-hESC	embryonic stem cell:	n/a	n/a
18	ATF2	chr11:93473763-93475196	GM12878	blood:	n/a	n/a
19	ATF2	chr11:93517021-93517767	H1-hESC	embryonic stem cell:	n/a	n/a
20	ATF2	chr11:93517124-93517653	H1-hESC	embryonic stem cell:	n/a	n/a
21	ATF2	chr11:93467822-93468329	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF2	chr11:93517774-93518335	GM12878	blood:	n/a	chr11:93518113-93518120
23	ATF2	chr11:93473625-93475327	GM12878	blood:	n/a	n/a
24	ATF2	chr11:93517105-93517610	GM12878	blood:	n/a	n/a
25	ATF2	chr11:93472924-93473531	GM12878	blood:	n/a	n/a
26	ATF2	chr11:93517784-93518261	H1-hESC	embryonic stem cell:	n/a	chr11:93518113-93518120
27	ATF2	chr11:93461409-93461826	H1-hESC	embryonic stem cell:	n/a	n/a
28	ATF2	chr11:93517662-93518236	GM12878	blood:	n/a	chr11:93518113-93518120
29	ATF2	chr11:93422415-93422779	GM12878	blood:	n/a	n/a
30	ATF2	chr11:93461225-93463274	GM12878	blood:	n/a	n/a
31	ATF2	chr11:93516976-93517703	GM12878	blood:	n/a	n/a
32	ATF2	chr11:93472474-93475177	H1-hESC	embryonic stem cell:	n/a	n/a
33	ATF2	chr11:93451290-93451852	GM12878	blood:	n/a	n/a
34	ATF2	chr11:93517796-93518227	H1-hESC	embryonic stem cell:	n/a	chr11:93518113-93518120
35	ATF2	chr11:93473723-93475061	H1-hESC	embryonic stem cell:	n/a	n/a
36	ATF2	chr11:93461272-93462770	GM12878	blood:	n/a	n/a
37	ATF3	chr11:93475098-93475449	K562	blood:	n/a	n/a
38	ATF3	chr11:93529990-93530356	K562	blood:	n/a	n/a
39	ATF3	chr11:93517904-93518269	K562	blood:	n/a	n/a
40	ATF3	chr11:93451401-93451831	K562	blood:	n/a	n/a
41	ATF3	chr11:93474572-93474868	K562	blood:	n/a	chr11:93474748-93474768
42	BACH1	chr11:93448082-93448091	H1-hESC	embryonic stem cell:	n/a	n/a
43	BACH1	chr11:93471099-93471661	K562	blood:	n/a	n/a
44	BACH1	chr11:93473948-93475360	H1-hESC	embryonic stem cell:	n/a	n/a
45	BACH1	chr11:93451649-93451670	K562	blood:	n/a	n/a
46	BACH1	chr11:93473703-93474424	K562	blood:	n/a	chr11:93473726-93473740
47	BATF	chr11:93401367-93401661	GM12878	blood:	n/a	n/a
48	BATF	chr11:93480334-93480599	GM12878	blood:	n/a	n/a
49	BATF	chr11:93422379-93422778	GM12878	blood:	n/a	n/a
50	BATF	chr11:93456652-93456848	GM12878	blood:	n/a	chr11:93456766-93456777

(count:3726 , 50 per page) page: 1 2 3 4 5 6 7 ... 75

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:93474517-93474567	SK-N-MC	brain:	n/a
2	chr11:93517137-93517187	AoSMC	blood vessel:	n/a
3	chr11:93476060-93476110	HCT-116	colon:	n/a
4	chr11:93474102-93474152	ovcar-3	ovarian:	n/a
5	chr11:93474517-93474567	HMEC	breast:	n/a
6	chr11:93474517-93474567	SK-N-MC	brain:	n/a
7	chr11:93517137-93517187	AoSMC	blood vessel:	n/a
8	chr11:93476060-93476110	HCT-116	colon:	n/a
9	chr11:93474102-93474152	ovcar-3	ovarian:	n/a
10	chr11:93474517-93474567	HMEC	breast:	n/a
11	chr11:93474621-93474671	HRE	kidney:	n/a
12	chr11:93517154-93517204	AG04450	lung:	fetal
13	chr11:93468466-93468516	NH-A	brain:	n/a
14	chr11:93464739-93464789	ECC-1	luminal epithelium:	n/a
15	chr11:93466826-93466876	HUVEC	blood vessel:	n/a
16	chr11:93517359-93517409	AoSMC	blood vessel:	n/a
17	chr11:93453844-93453894	HRCEpiC	kidney:	n/a
18	chr11:93475054-93475104	MCF10A-Er-Src	breast:	n/a
19	chr11:93517413-93517463	HEEpiC	esophagus:	n/a
20	chr11:93474621-93474671	HRCEpiC	kidney:	n/a
21	chr11:93474820-93474870	U87	brain:	n/a
22	chr11:93474705-93474755	HIPEpiC	eye:	n/a
23	chr11:93474705-93474755	HepG2	liver:	n/a
24	chr11:93474459-93474509	GM06990	blood:	n/a
25	chr11:93464739-93464789	AG09319	gingival:	n/a
26	chr11:93491807-93491857	LNCaP	prostate:	n/a
27	chr11:93545830-93545880	BJ	skin:	n/a
28	chr11:93464721-93464771	SKMC	muscle:	n/a
29	chr11:93471889-93471939	Jurkat	blood:	n/a
30	chr11:93454869-93454919	AoSMC	blood vessel:	n/a
31	chr11:93453897-93453947	PrEC	prostate:	n/a
32	chr11:93419212-93419262	AG10803	skin:	n/a
33	chr11:93466826-93466876	AG04449	skin:	fetal
34	chr11:93453844-93453894	ECC-1	luminal epithelium:	n/a
35	chr11:93474015-93474065	ovcar-3	ovarian:	n/a
36	chr11:93474705-93474755	GM12892	blood:	n/a
37	chr11:93491807-93491857	HPAEpiC	pulmonary alveolar:	n/a
38	chr11:93476777-93476827	CMK	blood:	n/a
39	chr11:93474945-93474995	HRPEpiC	eye:	n/a
40	chr11:93474632-93474682	GM06990	blood:	n/a
41	chr11:93464739-93464789	HIPEpiC	eye:	n/a
42	chr11:93464769-93464819	GM12878	blood:	n/a
43	chr11:93463762-93463812	HCF	heart:	n/a
44	chr11:93468466-93468516	BE2_C	brain:	n/a
45	chr11:93467095-93467145	HCM	heart:	n/a
46	chr11:93474517-93474567	SKMC	muscle:	n/a
47	chr11:93474102-93474152	NT2-D1	testis:	n/a
48	chr11:93517413-93517463	SAEC	small airway:	n/a
49	chr11:93474945-93474995	HMEC	breast:	n/a
50	chr11:93464739-93464789	AG09309	skin:	n/a

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No.	Distal block	Cell Line	Cell type
1	chr11:93410711..93413098-chr11:93461356..93464039,2	K562	blood:
2	chr11:93474235..93474782-chr7:25164031..25164939,2	Hela-S3	cervix:
3	chr11:93473315..93475690-chr11:93534883..93537074,2	K562	blood:
4	chr11:93459100..93466497-chr11:93514555..93520746,14	K562	blood:
5	chr11:93529722..93532438-chr11:93533262..93535785,3	K562	blood:
6	chr11:93426559..93430443-chr11:93430901..93434994,4	K562	blood:
7	chr11:93479263..93481099-chr11:93482521..93484023,2	MCF-7	breast:
8	chr11:93434182..93436151-chr11:93471959..93474682,2	MCF-7	breast:
9	chr11:93468490..93476714-chr11:93515963..93520210,25	MCF-7	breast:
10	chr11:93473849..93474761-chr20:57267926..57268596,2	Hela-S3	cervix:
11	chr11:93392460..93395279-chr11:93515167..93518670,4	K562	blood:
12	chr11:93460575..93462984-chr11:93526258..93528931,2	K562	blood:
13	chr11:93474255..93474839-chr15:59225300..59226117,2	Hela-S3	cervix:
14	chr11:93474178..93474921-chr19:49375243..49376221,3	Hela-S3	cervix:
15	chr11:93474174..93474797-chr21:44299276..44300231,2	Hela-S3	cervix:
16	chr11:93500273..93502997-chr11:93515833..93518009,2	MCF-7	breast:
17	chr11:93473875..93477251-chr11:93500933..93504906,6	K562	blood:
18	chr11:93461422..93463620-chr11:93529792..93531754,2	K562	blood:
19	chr11:93425566..93428125-chr11:93465692..93468498,2	K562	blood:
20	chr11:93476858..93478518-chr11:93487193..93489056,2	K562	blood:
21	chr11:93474223..93474807-chr15:75493674..75494425,2	Hela-S3	cervix:
22	chr11:93394628..93397183-chr11:93397951..93402212,5	MCF-7	breast:
23	chr11:93540964..93543931-chr11:93544131..93548856,5	K562	blood:
24	chr11:93462890..93477443-chr11:93512595..93526939,73	K562	blood:
25	chr11:93480523..93482520-chr11:93485801..93487709,2	K562	blood:
26	chr11:93517422..93518199-chr4:83811923..83812913,2	HCT-116	colon:
27	chr11:93516997..93517591-chr19:10828741..10829245,2	NB4	blood:
28	chr11:93274349..93277500-chr11:93472599..93475364,3	K562	blood:
29	chr11:93426023..93428868-chr11:93450822..93452994,2	MCF-7	breast:
30	chr1:181057417..181057918-chr11:93474631..93475270,2	NB4	blood:
31	chr11:93472413..93474850-chr11:93477709..93480682,4	MCF-7	breast:
32	chr11:93472800..93476056-chr11:93515203..93522725,16	MCF-7	breast:
33	chr11:93424757..93427066-chr11:93464464..93467192,2	K562	blood:
34	chr11:93426559..93430443-chr11:93430901..93434994,4	K562	blood:
35	chr11:93474223..93474838-chr7:139025487..139026014,2	Hela-S3	cervix:
36	chr11:93474380..93475062-chr9:88897266..88898042,2	Hela-S3	cervix:
37	chr11:93477638..93479827-chr11:93520843..93522427,2	K562	blood:
38	chr11:93516890..93517521-chr13:111367237..111368055,2	NB4	blood:
39	chr11:93459822..93462778-chr11:93509047..93511510,2	K562	blood:
40	chr11:93537016..93539713-chr11:93541051..93542854,2	MCF-7	breast:
41	chr11:93483588..93485531-chr11:93488372..93490114,2	K562	blood:
42	chr11:93449498..93453225-chr11:93454888..93458363,6	K562	blood:
43	chr11:93490567..93493533-chr11:93516830..93519053,3	MCF-7	breast:
44	chr11:93430723..93432846-chr11:93435605..93437585,2	K562	blood:
45	chr11:93408933..93411947-chr11:93412897..93417212,4	K562	blood:
46	chr1:53662219..53662722-chr11:93516988..93517517,2	NB4	blood:
47	chr11:93474194..93474880-chr17:41465994..41466724,2	Hela-S3	cervix:
48	chr11:93507097..93508668-chr11:93516203..93518095,2	MCF-7	breast:
49	chr1:86046206..86046941-chr11:93473961..93474726,2	Hela-S3	cervix:
50	chr11:93469161..93471027-chr11:93530536..93532908,2	K562	blood:

(count:64 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VSTM5-1	chr11:93464919-93464965	NONHSAT023667
2	lnc-C11orf54-3	chr11:93533649-93533916	NONHSAT023695
3	lnc-VSTM5-1	chr11:93463843-93463878	NONHSAT023667
4	lnc-VSTM5-1	chr11:93463843-93463878	NONHSAT023666
5	lnc-VSTM5-1	chr11:93474488-93474662	NONHSAT023665
6	lnc-C11orf54-1	chr11:93454680-93454956	NONHSAT023657
7	lnc-VSTM5-1	chr11:93463520-93463613	NONHSAT023667
8	lnc-VSTM5-1	chr11:93467791-93467826	NONHSAT023662
9	lnc-VSTM5-1	chr11:93464316-93464382	NONHSAT023667
10	lnc-VSTM5-1	chr11:93465410-93465457	NONHSAT023664
11	lnc-VSTM5-1	chr11:93464919-93464965	NONHSAT023664
12	lnc-VSTM5-1	chr11:93468129-93469323	NONHSAT023671
13	lnc-VSTM5-1	chr11:93466253-93466287	NONHSAT023666
14	lnc-VSTM5-1	chr11:93463438-93463613	NONHSAT023662
15	lnc-VSTM5-1	chr11:93463843-93463878	NONHSAT023661
16	lnc-VSTM5-1	chr11:93465410-93465457	NONHSAT023666
17	lnc-VSTM5-1	chr11:93464919-93464965	NONHSAT023666
18	lnc-VSTM5-1	chr11:93465410-93465457	NONHSAT023662
19	lnc-VSTM5-1	chr11:93464919-93464965	NONHSAT023661
20	lnc-VSTM5-1	chr11:93464316-93464382	NONHSAT023664
21	lnc-VSTM5-1	chr11:93466516-93467827	NONHSAT023666
22	lnc-VSTM5-1	chr11:93463843-93464382	NONHSAT023663
23	lnc-VSTM5-1	chr11:93464919-93464965	NONHSAT023662
24	lnc-VSTM5-1	chr11:93466253-93466287	NONHSAT023671
25	lnc-VSTM5-1	chr11:93466253-93466287	NONHSAT023667
26	lnc-VSTM5-1	chr11:93464919-93465434	NONHSAT023669
27	lnc-C11orf54-1	chr11:93454679-93455031	ENSG00000254911.1
28	lnc-VSTM5-1	chr11:93467791-93467826	NONHSAT023679
29	lnc-VSTM5-1	chr11:93463843-93463878	NONHSAT023662
30	lnc-VSTM5-1	chr11:93463449-93463613	NONHSAT023666
31	lnc-VSTM5-1	chr11:93463448-93463613	NONHSAT023663
32	lnc-VSTM5-1	chr11:93463843-93463878	NONHSAT023664
33	lnc-VSTM5-1	chr11:93464919-93464965	NONHSAT023663
34	lnc-VSTM5-1	chr11:93466143-93466563	NONHSAT023679
35	lnc-C11orf54-5	chr11:93428663-93428786	NONHSAT023654
36	lnc-VSTM5-1	chr11:93464327-93464382	NONHSAT023671
37	lnc-VSTM5-1	chr11:93464316-93464382	NONHSAT023662
38	lnc-VSTM5-1	chr11:93469081-93469470	NONHSAT023686
39	lnc-VSTM5-1	chr11:93469307-93469972	NONHSAT023679
40	lnc-VSTM5-1	chr11:93464919-93464965	NONHSAT023671
41	lnc-VSTM5-1	chr11:93464316-93464382	NONHSAT023661
42	lnc-KIAA1731-1	chr11:93466523-93466559	NONHSAT023682
43	lnc-VSTM5-1	chr11:93465410-93469014	NONHSAT023663
44	lnc-VSTM5-1	chr11:93463448-93463613	NONHSAT023664
45	lnc-VSTM5-1	chr11:93466253-93466287	NONHSAT023662
46	lnc-VSTM5-1	chr11:93466516-93466585	NONHSAT023667
47	lnc-VSTM5-1	chr11:93466516-93466563	NONHSAT023671
48	lnc-C11orf54-5	chr11:93424847-93424941	NONHSAT023654
49	lnc-VSTM5-1	chr11:93465410-93465457	NONHSAT023671
50	lnc-VSTM5-1	chr11:93465410-93465457	NONHSAT023667

miRNA name	Chromosome Location	mirBase accession
hsa-miR-1304-3p	chr11:93466857-93466878	MIMAT0022720
hsa-miR-1304-5p	chr11:93466890-93466911	MIMAT0005892

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	C11orf54	hsa-miR-375	chr11:93495196-93495202

Variant related genes	Relation type
RN7SL195P	TF binding region
SNORA8	TF binding region
ENSG00000199875	TF binding region
SNORA40	TF binding region
SNORA1	TF binding region
KIAA1731	TF binding region
SNORD5	TF binding region
SNORA18	TF binding region
SNORA25	TF binding region
MED17	TF binding region
SCARNA9	TF binding region
ENSG00000238437	TF binding region
SNORA32	TF binding region
TAF1D	TF binding region
SNORD6	TF binding region
C11orf54	TF binding region
MIR1304	TF binding region
RN7SL195P	CpG island
SNORA8	CpG island
ENSG00000199875	CpG island
SNORA40	CpG island
SNORA1	CpG island
KIAA1731	CpG island
SNORD5	CpG island
SNORA18	CpG island
SNORA25	CpG island
MED17	CpG island
SCARNA9	CpG island
ENSG00000238437	CpG island
SNORA32	CpG island
TAF1D	CpG island
SNORD6	CpG island
C11orf54	CpG island
MIR1304	CpG island
ENSG00000238923	chromatin interactions
ENSG00000160194	chromatin interactions
ENSG00000188021	chromatin interactions
ENSG00000182919	chromatin interactions
ENSG00000089022	chromatin interactions
ENSG00000197153	chromatin interactions
ENSG00000206834	chromatin interactions
ENSG00000258017	chromatin interactions
ENSG00000020922	chromatin interactions
ENSG00000188825	chromatin interactions
ENSG00000203667	chromatin interactions
ENSG00000200795	chromatin interactions
ENSG00000173812	chromatin interactions
ENSG00000239195	chromatin interactions
ENSG00000210825	chromatin interactions
ENSG00000175592	chromatin interactions
ENSG00000202314	chromatin interactions
ENSG00000137776	chromatin interactions
ENSG00000199875	chromatin interactions
ENSG00000271888	chromatin interactions
ENSG00000139372	chromatin interactions
ENSG00000165494	chromatin interactions
ENSG00000205302	chromatin interactions
ENSG00000011304	chromatin interactions
ENSG00000264021	chromatin interactions
ENSG00000006625	chromatin interactions
ENSG00000207145	chromatin interactions
ENSG00000163660	chromatin interactions
ENSG00000232671	chromatin interactions
ENSG00000167173	chromatin interactions
ENSG00000173039	chromatin interactions
ENSG00000132475	chromatin interactions
ENSG00000255234	chromatin interactions
ENSG00000155463	chromatin interactions
ENSG00000138674	chromatin interactions
ENSG00000174444	chromatin interactions
ENSG00000163113	chromatin interactions
ENSG00000207112	chromatin interactions
ENSG00000214376	chromatin interactions
ENSG00000010165	chromatin interactions
ENSG00000199347	chromatin interactions
ENSG00000234608	chromatin interactions
ENSG00000166004	chromatin interactions
ENSG00000258458	chromatin interactions
ENSG00000168876	chromatin interactions
ENSG00000100650	chromatin interactions
ENSG00000172115	chromatin interactions
ENSG00000157184	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000231916	chromatin interactions
ENSG00000221170	chromatin interactions
ENSG00000150316	chromatin interactions
ENSG00000186280	chromatin interactions
ENSG00000135070	chromatin interactions
ENSG00000111678	chromatin interactions
ENSG00000197903	chromatin interactions
ENSG00000184825	chromatin interactions
ENSG00000198805	chromatin interactions
ENSG00000249740	chromatin interactions
ENSG00000124523	chromatin interactions
ENSG00000147123	chromatin interactions
ENSG00000087074	chromatin interactions
ENSG00000254911	chromatin interactions
ENSG00000125868	chromatin interactions
ENSG00000079805	chromatin interactions
ENSG00000212694	chromatin interactions
ENSG00000142871	chromatin interactions
ENSG00000139116	chromatin interactions
ENSG00000137500	chromatin interactions
ENSG00000265292	chromatin interactions
ENSG00000198752	chromatin interactions
ENSG00000160193	chromatin interactions
ENSG00000162783	chromatin interactions
ENSG00000196586	chromatin interactions
ENSG00000166002	chromatin interactions
ENSG00000166012	chromatin interactions
ENSG00000182872	chromatin interactions
ENSG00000042429	chromatin interactions
ENSG00000164898	chromatin interactions
ENSG00000238437	chromatin interactions
ENSG00000207972	chromatin interactions
ENSG00000215440	chromatin interactions
ENSG00000139725	chromatin interactions
ENSG00000123416	chromatin interactions
ENSG00000206799	chromatin interactions
ENSG00000168298	chromatin interactions
ENSG00000207304	chromatin interactions
ENSG00000145623	chromatin interactions
ENSG00000233224	chromatin interactions
ENSG00000117632	chromatin interactions
ENSG00000170889	chromatin interactions
ENSG00000215301	chromatin interactions
ENSG00000143373	chromatin interactions
ENSG00000153487	chromatin interactions
ENSG00000141959	chromatin interactions
ENSG00000174442	chromatin interactions
ENSG00000163933	chromatin interactions
PDIA6	Mature miRNA region
PTPN12	miRNA target sites
TLN2	miRNA target sites
BMI1	miRNA target sites
DNMT3A	miRNA target sites
CDH2	miRNA target sites
ITGA9	miRNA target sites

Extended variants
information (count: 5882 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:5882 , 50 per page) page: 1 2 3 4 5 6 7 ... 118

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs185493116	chr11:93401353-93401354	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
2	rs7925086	chr11:93401408-93401409	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs189578244	chr11:93401410-93401411	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs533818699	chr11:93401433-93401434	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs571967169	chr11:93401435-93401436	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs539379599	chr11:93401442-93401443	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs530804109	chr11:93401469-93401470	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs550985396	chr11:93401477-93401478	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs557695569	chr11:93401552-93401553	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs140768917	chr11:93401555-93401556	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs182270287	chr11:93401558-93401559	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs373524819	chr11:93401565-93401566	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs186748166	chr11:93401591-93401592	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs7939834	chr11:93401592-93401593	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs34714362	chr11:93401619-93401620	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs7939847	chr11:93401620-93401621	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
17	rs12277652	chr11:93401691-93401692	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs566583327	chr11:93401705-93401706	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs528098834	chr11:93401708-93401709	Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs535689774	chr11:93401807-93401808	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs75019101	chr11:93401815-93401816	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs11822585	chr11:93401819-93401820	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs372676439	chr11:93401890-93401891	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs184088974	chr11:93401927-93401928	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs61743303	chr11:93402006-93402007	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs542488835	chr11:93402037-93402038	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs201673327	chr11:93402052-93402053	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs561409854	chr11:93402063-93402064	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs199759022	chr11:93402076-93402077	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs1944101	chr11:93402096-93402097	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs550405143	chr11:93402109-93402110	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs568998349	chr11:93402197-93402198	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs61921265	chr11:93402244-93402245	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs571627110	chr11:93402334-93402335	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs532552129	chr11:93402379-93402380	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs551263106	chr11:93402391-93402392	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs115230532	chr11:93402426-93402427	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs536832727	chr11:93402453-93402454	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs610888	chr11:93402454-93402455	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs548545897	chr11:93402482-93402483	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs80226506	chr11:93402509-93402510	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs610974	chr11:93402520-93402521	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs138592256	chr11:93402535-93402536	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs567348508	chr11:93402548-93402549	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs34099845	chr11:93402555-93402556	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs35553476	chr11:93402574-93402575	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs35665508	chr11:93402580-93402581	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs397964066	chr11:93402593-93402594	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs114172262	chr11:93402635-93402636	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs113035165	chr11:93402691-93402692	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Mental retardation	21062444	CNVD
Cancer	21499728	CNVD
Breast cancer	19181860	CNVD
Breast cancer	17603634	CNVD
Mantle cell lymphoma	19029149	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Schizophrenia	23813976	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:5134 , 50 per page) page: 1 2 3 4 5 6 7 ... 103

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93395400-93404000	Weak transcription	Esophagus	oesophagus
2	chr11:93395400-93406400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:93395400-93406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:93395400-93406800	Weak transcription	Lung	lung
5	chr11:93395400-93412200	Weak transcription	Gastric	stomach
6	chr11:93395400-93412200	Weak transcription	Pancreas	Pancrea
7	chr11:93395400-93417800	Weak transcription	Small Intestine	intestine
8	chr11:93395600-93402200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:93395600-93403800	Weak transcription	Left Ventricle	heart
10	chr11:93395600-93403800	Weak transcription	Ovary	ovary
11	chr11:93395600-93404000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:93395600-93404200	Weak transcription	Fetal Muscle Leg	muscle
13	chr11:93395600-93408200	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:93395600-93411800	Weak transcription	Aorta	Aorta
15	chr11:93395600-93412200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:93395600-93412400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:93395600-93412600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:93395600-93412600	Weak transcription	Colonic Mucosa	Colon
19	chr11:93395600-93417400	Weak transcription	Stomach Mucosa	stomach
20	chr11:93395600-93446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:93395800-93411800	Weak transcription	HSMMtube	muscle
22	chr11:93395800-93412200	Weak transcription	Thymus	Thymus
23	chr11:93395800-93413200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:93395800-93413400	Weak transcription	Right Ventricle	heart
25	chr11:93395800-93415800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:93396200-93404600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:93396200-93411800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr11:93396400-93401600	Weak transcription	Fetal Brain Female	brain
29	chr11:93396400-93402200	Weak transcription	Primary T cells from cord blood	blood
30	chr11:93396400-93402400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr11:93396400-93403800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr11:93396400-93404000	Weak transcription	Fetal Intestine Small	intestine
33	chr11:93396400-93404000	Weak transcription	Fetal Stomach	stomach
34	chr11:93396400-93406400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr11:93396400-93410400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr11:93396400-93412200	Weak transcription	Brain Angular Gyrus	brain
37	chr11:93396400-93417600	Weak transcription	Fetal Heart	heart
38	chr11:93396600-93401600	Weak transcription	Brain Germinal Matrix	brain
39	chr11:93396600-93401800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:93396600-93402200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:93396600-93402400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr11:93396600-93403800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:93396600-93403800	Weak transcription	Brain Anterior Caudate	brain
44	chr11:93396600-93407200	Weak transcription	Spleen	Spleen
45	chr11:93396600-93412000	Weak transcription	Psoas Muscle	Psoas
46	chr11:93396600-93413200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:93396600-93417600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr11:93396800-93412600	Weak transcription	A549	lung
49	chr11:93396800-93413200	Weak transcription	NHLF	lung
50	chr11:93396800-93415200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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