Variant report

Variant	nsv833875
Chromosome Location	chr19:53211335-53391459
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2584)
CpG islands
(count:3358)
Chromatin interactive
region (count:41)
LncRNA
region (count:52)
Mature miRNA
region (count: 0)
miRNA target
sites (count:3)

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No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:53228598-53228749	K562	blood:	n/a	n/a
2	ARID3A	chr19:53228340-53228382	K562	blood:	n/a	n/a
3	ARID3A	chr19:53227189-53227366	K562	blood:	n/a	n/a
4	ARID3A	chr19:53227580-53227746	HepG2	liver:	n/a	n/a
5	ARID3A	chr19:53238204-53238593	HepG2	liver:	n/a	n/a
6	ATF1	chr19:53233027-53233245	K562	blood:	n/a	n/a
7	ATF1	chr19:53219224-53219418	K562	blood:	n/a	n/a
8	ATF1	chr19:53238100-53238672	K562	blood:	n/a	n/a
9	ATF1	chr19:53289778-53290273	K562	blood:	n/a	n/a
10	ATF1	chr19:53227069-53227523	K562	blood:	n/a	n/a
11	ATF1	chr19:53260119-53260246	K562	blood:	n/a	n/a
12	ATF2	chr19:53281984-53282357	GM12878	blood:	n/a	n/a
13	ATF2	chr19:53238937-53239428	H1-hESC	embryonic stem cell:	n/a	n/a
14	ATF2	chr19:53239019-53239370	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF3	chr19:53238046-53238465	K562	blood:	n/a	n/a
16	ATF3	chr19:53228814-53229132	K562	blood:	n/a	n/a
17	BACH1	chr19:53324738-53324945	H1-hESC	embryonic stem cell:	n/a	n/a
18	BACH1	chr19:53289805-53290074	H1-hESC	embryonic stem cell:	n/a	n/a
19	BACH1	chr19:53360719-53361014	H1-hESC	embryonic stem cell:	n/a	n/a
20	BACH1	chr19:53238107-53238408	H1-hESC	embryonic stem cell:	n/a	n/a
21	BATF	chr19:53294543-53294932	GM12878	blood:	n/a	chr19:53294862-53294873 chr19:53294863-53294873 chr19:53294867-53294877
22	BATF	chr19:53336721-53337013	GM12878	blood:	n/a	chr19:53336917-53336927 chr19:53336913-53336923 chr19:53336723-53336732 chr19:53336898-53336906
23	BATF	chr19:53218901-53219394	GM12878	blood:	n/a	chr19:53219199-53219209 chr19:53219203-53219213
24	BATF	chr19:53218901-53219396	GM12878	blood:	n/a	chr19:53219199-53219209 chr19:53219203-53219213
25	BATF	chr19:53245884-53246161	GM12878	blood:	n/a	chr19:53245986-53245996 chr19:53245985-53245996 chr19:53245990-53246000
26	BATF	chr19:53281931-53282380	GM12878	blood:	n/a	chr19:53282197-53282207 chr19:53282192-53282203 chr19:53282193-53282203
27	BATF	chr19:53243525-53243726	GM12878	blood:	n/a	n/a
28	BATF	chr19:53245915-53246089	GM12878	blood:	n/a	chr19:53245986-53245996 chr19:53245985-53245996 chr19:53245990-53246000
29	BATF	chr19:53294643-53295039	GM12878	blood:	n/a	chr19:53294862-53294873 chr19:53294863-53294873 chr19:53294867-53294877
30	BATF	chr19:53281917-53282463	GM12878	blood:	n/a	chr19:53282197-53282207 chr19:53282192-53282203 chr19:53282193-53282203
31	BATF	chr19:53336688-53337003	GM12878	blood:	n/a	chr19:53336917-53336927 chr19:53336913-53336923 chr19:53336723-53336732 chr19:53336898-53336906
32	BCL11A	chr19:53282016-53282371	GM12878	blood:	n/a	chr19:53282195-53282204
33	BCL11A	chr19:53282060-53282342	GM12878	blood:	n/a	chr19:53282195-53282204
34	BCL11A	chr19:53360679-53360916	GM12878	blood:	n/a	chr19:53360828-53360837
35	BCL11A	chr19:53240555-53240723	GM12878	blood:	n/a	n/a
36	BCL11A	chr19:53219085-53219334	GM12878	blood:	n/a	chr19:53219201-53219210
37	BCL11A	chr19:53219022-53219347	GM12878	blood:	n/a	chr19:53219201-53219210
38	BCL11A	chr19:53238080-53238304	GM12878	blood:	n/a	n/a
39	BCL11A	chr19:53362420-53362624	GM12878	blood:	n/a	n/a
40	BCL3	chr19:53235753-53236010	GM12878	blood:	n/a	n/a
41	BCLAF1	chr19:53289804-53290138	GM12878	blood:	n/a	n/a
42	BCLAF1	chr19:53237957-53238447	GM12878	blood:	n/a	chr19:53238422-53238435
43	BHLHE40	chr19:53360687-53361035	GM12878	blood:	n/a	chr19:53360820-53360836 chr19:53360998-53361014
44	BHLHE40	chr19:53228364-53229160	K562	blood:	n/a	n/a
45	BHLHE40	chr19:53238239-53238453	GM12878	blood:	n/a	n/a
46	BHLHE40	chr19:53282085-53282438	GM12878	blood:	n/a	n/a
47	BHLHE40	chr19:53238124-53238500	K562	blood:	n/a	n/a
48	BHLHE40	chr19:53376302-53376339	K562	blood:	n/a	n/a
49	BHLHE40	chr19:53324867-53324898	K562	blood:	n/a	n/a
50	BHLHE40	chr19:53229503-53229523	K562	blood:	n/a	n/a

(count:3358 , 50 per page) page: 1 2 3 4 5 6 7 ... 68

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:53357134-53357184	NT2-D1	testis:	n/a
2	chr19:53324198-53324248	GM12892	blood:	n/a
3	chr19:53361066-53361116	LNCaP	prostate:	n/a
4	chr19:53357134-53357184	NT2-D1	testis:	n/a
5	chr19:53324198-53324248	GM12892	blood:	n/a
6	chr19:53361066-53361116	LNCaP	prostate:	n/a
7	chr19:53290126-53290176	K562	blood:	n/a
8	chr19:53233368-53233418	AG09319	gingival:	n/a
9	chr19:53290079-53290129	U87	brain:	n/a
10	chr19:53324198-53324248	Hela-S3	cervix:	n/a
11	chr19:53233245-53233295	A549	lung:	n/a
12	chr19:53326091-53326141	HRPEpiC	eye:	n/a
13	chr19:53238445-53238495	HMEC	breast:	n/a
14	chr19:53269486-53269536	PrEC	prostate:	n/a
15	chr19:53229766-53229816	NB4	blood:	n/a
16	chr19:53302456-53302506	MCF10A-Er-Src	breast:	n/a
17	chr19:53326219-53326269	PFSK-1	brain:	n/a
18	chr19:53290126-53290176	HPAEpiC	pulmonary alveolar:	n/a
19	chr19:53233245-53233295	HEEpiC	esophagus:	n/a
20	chr19:53324198-53324248	NHDF-neo	bronchial:	n/a
21	chr19:53237862-53237912	HPAEpiC	pulmonary alveolar:	n/a
22	chr19:53362925-53362975	K562	blood:	n/a
23	chr19:53360728-53360778	AG04449	skin:	fetal
24	chr19:53233164-53233214	PrEC	prostate:	n/a
25	chr19:53290126-53290176	Caco-2	colon:	n/a
26	chr19:53290126-53290176	PFSK-1	brain:	n/a
27	chr19:53237862-53237912	AG10803	skin:	n/a
28	chr19:53238337-53238387	HNPCEpiC	eye:	n/a
29	chr19:53233245-53233295	AG09309	skin:	n/a
30	chr19:53290205-53290255	PrEC	prostate:	n/a
31	chr19:53238337-53238387	GM12892	blood:	n/a
32	chr19:53361066-53361116	HL-60	blood:	n/a
33	chr19:53238445-53238495	CMK	blood:	n/a
34	chr19:53325104-53325154	ovcar-3	ovarian:	n/a
35	chr19:53238498-53238548	AG04449	skin:	fetal
36	chr19:53237862-53237912	ProgFib	skin:	n/a
37	chr19:53290126-53290176	SAEC	small airway:	n/a
38	chr19:53238254-53238304	HEEpiC	esophagus:	n/a
39	chr19:53325913-53325963	Hela-S3	cervix:	n/a
40	chr19:53326219-53326269	PrEC	prostate:	n/a
41	chr19:53326091-53326141	NB4	blood:	n/a
42	chr19:53290126-53290176	HL-60	blood:	n/a
43	chr19:53383549-53383599	HCM	heart:	n/a
44	chr19:53325913-53325963	U87	brain:	n/a
45	chr19:53290312-53290362	CMK	blood:	n/a
46	chr19:53289933-53289983	GM06990	blood:	n/a
47	chr19:53228974-53229024	NHDF-neo	bronchial:	n/a
48	chr19:53233083-53233133	ovcar-3	ovarian:	n/a
49	chr19:53303448-53303498	HepG2	liver:	n/a
50	chr19:53302456-53302506	SKMC	muscle:	n/a

(count:41 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:53280779..53283746-chr19:53287922..53290818,5	K562	blood:
2	chr19:53377771..53379611-chr19:53399736..53401870,2	K562	blood:
3	chr19:53193532..53195862-chr19:53359115..53361191,3	K562	blood:
4	chr19:53226674..53228672-chr19:53232730..53234940,2	K562	blood:
5	chr19:53322321..53326212-chr19:53359321..53361245,3	K562	blood:
6	chr19:53115970..53118193-chr19:53236786..53238588,2	K562	blood:
7	chr19:53322321..53326212-chr19:53359321..53361245,3	K562	blood:
8	chr19:53338835..53341536-chr19:53343202..53344870,2	K562	blood:
9	chr19:53215678..53217452-chr19:53219568..53222029,2	K562	blood:
10	chr19:53288948..53291766-chr19:53301308..53304079,2	K562	blood:
11	chr19:53322321..53326212-chr19:53359240..53361245,4	K562	blood:
12	chr19:53324497..53325251-chr19:53360339..53360857,4	MCF-7	breast:
13	chr19:53359757..53362433-chr19:53464752..53467349,2	MCF-7	breast:
14	chr19:53357060..53358583-chr19:53400479..53402706,2	MCF-7	breast:
15	chr19:53335113..53339470-chr19:53340101..53344099,5	K562	blood:
16	chr19:53227707..53230460-chr19:53236213..53239636,6	K562	blood:
17	chr19:53236450..53239197-chr19:53240698..53243642,2	K562	blood:
18	chr19:53380234..53382987-chr19:53399088..53400987,2	K562	blood:
19	chr19:53226674..53228672-chr19:53232730..53234940,2	K562	blood:
20	chr19:53227707..53230460-chr19:53236213..53239636,6	K562	blood:
21	chr19:53236244..53237950-chr19:53242142..53244901,2	K562	blood:
22	chr19:53322321..53326212-chr19:53359240..53361245,4	K562	blood:
23	chr14:93214475..93215046-chr19:53237894..53238692,2	Hela-S3	cervix:
24	chr19:53390480..53393412-chr19:53415932..53418277,2	K562	blood:
25	chr19:53324392..53324894-chr19:53934932..53935516,2	MCF-7	breast:
26	chr19:53359564..53361265-chr19:53424872..53426783,2	MCF-7	breast:
27	chr19:53227642..53230112-chr19:53236849..53239461,2	K562	blood:
28	chr19:53284850..53287271-chr19:53288897..53290598,2	MCF-7	breast:
29	chr19:53324563..53325122-chr19:53360322..53360852,2	NB4	blood:
30	chr19:53338835..53341536-chr19:53343202..53344870,2	K562	blood:
31	chr19:53233250..53234773-chr19:53236233..53238057,2	K562	blood:
32	chr19:53339213..53341134-chr20:46203984..46206130,2	MCF-7	breast:
33	chr19:53215678..53217452-chr19:53219568..53222029,2	K562	blood:
34	chr19:53335113..53339470-chr19:53340101..53344099,5	K562	blood:
35	chr19:53233250..53234773-chr19:53236233..53238057,2	K562	blood:
36	chr19:53236244..53237950-chr19:53242142..53244901,2	K562	blood:
37	chr19:53324497..53325251-chr19:53360339..53360857,4	MCF-7	breast:
38	chr19:53227642..53230112-chr19:53236849..53239461,2	K562	blood:
39	chr19:53237008..53239147-chr19:53540786..53542527,2	MCF-7	breast:
40	chr19:53296635..53299410-chr19:53311177..53313587,2	K562	blood:
41	chr19:53199473..53201886-chr19:53208932..53211700,2	K562	blood:

(count:52 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF468-1	chr19:53348432-53348549	NR_102300
2	lnc-ZNF468-1	chr19:53360825-53360902	NR_102301
3	lnc-ZNF701-2	chr19:53300917-53301869	NONHSAT067585
4	lnc-ZNF83-5	chr19:53226674-53227917	NONHSAT067581
5	lnc-ZNF83-5	chr19:53224406-53224520	NONHSAT067579
6	lnc-ZNF701-2	chr19:53342913-53343520	NONHSAT067585
7	lnc-ZNF468-1	chr19:53352340-53352466	NR_102299
8	lnc-ZNF468-1	chr19:53360825-53360902	NR_102300
9	lnc-ZNF320-3	chr19:53367043-53367412	NONHSAT067591
10	lnc-ZNF320-3	chr19:53367175-53367412	NONHSAT067592
11	lnc-ZNF600-1	chr19:53289848-53290024	NONHSAT067584
12	lnc-ZNF468-3	chr19:53321197-53321281	NONHSAT067589
13	lnc-ZNF320-3	chr19:53377245-53377325	NONHSAT067591
14	lnc-ZNF468-3	chr19:53321197-53321284	NONHSAT067588
15	lnc-ZNF468-1	chr19:53357511-53357598	NR_102299
16	lnc-ZNF320-3	chr19:53382704-53382886	NONHSAT067592
17	lnc-ZNF600-1	chr19:53283906-53284308	NONHSAT067582
18	lnc-ZNF83-5	chr19:53233159-53233258	NONHSAT067580
19	lnc-ZNF468-1	chr19:53357125-53357379	NR_102299
20	lnc-ZNF468-3	chr19:53324839-53324886	NONHSAT067588
21	lnc-ZNF468-1	chr19:53357511-53357598	NR_102300
22	lnc-ZNF468-1	chr19:53357511-53357598	NR_102301
23	lnc-ZNF600-1	chr19:53284245-53284717	NONHSAT067584
24	lnc-ZNF468-1	chr19:53357125-53357379	NR_102301
25	lnc-ZNF600-1	chr19:53289848-53289977	NONHSAT067583
26	lnc-ZNF320-3	chr19:53377245-53377325	NONHSAT067592
27	lnc-ZNF83-5	chr19:53231983-53232084	NONHSAT067580
28	lnc-ZNF600-1	chr19:53284570-53284717	NONHSAT067583
29	lnc-ZNF468-1	chr19:53352340-53352466	NR_102301
30	lnc-ZNF468-3	chr19:53311129-53311386	NONHSAT067588
31	lnc-ZNF83-5	chr19:53231983-53232084	NONHSAT067579
32	lnc-ZNF468-1	chr19:53360825-53360902	NR_102299
33	lnc-ZNF83-5	chr19:53224436-53224520	NONHSAT067580
34	lnc-ZNF600-1	chr19:53289848-53290044	NONHSAT067582
35	lnc-ZNF83-5	chr19:53238254-53238326	NONHSAT067579
36	lnc-ZNF468-1	chr19:53348432-53348549	NR_102299
37	lnc-ZNF320-3	chr19:53377411-53377490	NONHSAT067591
38	lnc-ZNF468-1	chr19:53352340-53352466	NR_102300
39	lnc-ZNF468-1	chr19:53341785-53345404	NR_102300
40	lnc-ZNF83-5	chr19:53227124-53227242	NONHSAT067579
41	lnc-ZNF600-1	chr19:53284081-53284308	NONHSAT067583
42	lnc-ZNF468-1	chr19:53341785-53345404	NR_102301
43	lnc-ZNF468-1	chr19:53341785-53345404	NR_102299
44	lnc-ZNF83-5	chr19:53238254-53238268	NONHSAT067580
45	lnc-ZNF468-1	chr19:53357125-53357360	NR_102300
46	lnc-ZNF468-2	chr19:53365060-53366119	NONHSAT067590
47	lnc-ZNF83-5	chr19:53233159-53233258	NONHSAT067579
48	lnc-ZNF83-3	chr19:53211457-53211582	NONHSAT067577
49	lnc-ZNF701-2	chr19:53301030-53301858	NONHSAT067586
50	lnc-ZNF320-1	chr19:53379431-53379838	NONHSAT067593

No data

(count:3 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	ZNF320	hsa-miR-192-5p	chr19:53381440-53381461
2	ZNF28	hsa-miR-155-5p	chr19:53301652-53301677
3	ZNF28	hsa-miR-155-5p	chr19:53301585-53301611

Variant related genes	Relation type
ZNF611	TF binding region
ENSG00000268225	TF binding region
ZNF320	TF binding region
ZNF28	TF binding region
ZNF468	TF binding region
ENSG00000255875	TF binding region
ZNF600	TF binding region
ZNF611	CpG island
ENSG00000268225	CpG island
ZNF320	CpG island
ZNF28	CpG island
ZNF468	CpG island
ENSG00000255875	CpG island
ZNF600	CpG island
ENSG00000204604	chromatin interactions
ENSG00000213793	chromatin interactions
ENSG00000269646	chromatin interactions
ENSG00000160336	chromatin interactions
ENSG00000100600	chromatin interactions
ENSG00000241015	chromatin interactions
ENSG00000182986	chromatin interactions
ENSG00000198538	chromatin interactions
ENSG00000221874	chromatin interactions
ENSG00000242779	chromatin interactions
ENSG00000255875	chromatin interactions
ENSG00000189190	chromatin interactions
ENSG00000167766	chromatin interactions
ENSG00000180257	chromatin interactions
ENSG00000213020	chromatin interactions
HAUS6	miRNA target sites
PCBP2	miRNA target sites
LMNB1	miRNA target sites

Extended variants
information (count: 9750 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:9750 , 50 per page) page: 1 2 3 4 5 6 7 ... 195

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs538390672	chr19:53211386-53211387	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs556998051	chr19:53211398-53211399	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs566641928	chr19:53211455-53211456	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs149287774	chr19:53211457-53211458	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
5	rs144542865	chr19:53211491-53211492	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
6	rs573179672	chr19:53211523-53211524	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
7	rs540508372	chr19:53211524-53211525	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
8	rs148467957	chr19:53211530-53211531	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
9	rs144138736	chr19:53211541-53211542	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
10	rs71335673	chr19:53211591-53211592	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs544046749	chr19:53211644-53211645	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs10425042	chr19:53211655-53211656	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs114562255	chr19:53211686-53211687	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
14	rs548968712	chr19:53211706-53211707	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
15	rs567318304	chr19:53211707-53211708	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
16	rs528801045	chr19:53211710-53211711	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
17	rs565195604	chr19:53211738-53211739	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
18	rs115004643	chr19:53211763-53211764	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
19	rs571777383	chr19:53211770-53211771	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
20	rs139797152	chr19:53211790-53211791	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
21	rs143168102	chr19:53211791-53211792	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
22	rs568985779	chr19:53211792-53211793	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
23	rs536309137	chr19:53211830-53211831	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
24	rs554643470	chr19:53211836-53211837	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
25	rs572858336	chr19:53211854-53211855	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
26	rs533869820	chr19:53211895-53211896	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
27	rs556960118	chr19:53211961-53211962	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
28	rs151158567	chr19:53211962-53211963	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
29	rs544403551	chr19:53211971-53211972	Weak transcription Strong transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
30	rs376808713	chr19:53212140-53212141	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs562295590	chr19:53212167-53212168	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs575380196	chr19:53212224-53212225	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs188213228	chr19:53212249-53212250	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs568804391	chr19:53212295-53212296	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs564407846	chr19:53212324-53212325	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs140186743	chr19:53212347-53212348	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs528447930	chr19:53212349-53212350	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs546650759	chr19:53212352-53212353	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs11084178	chr19:53212361-53212362	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs532657044	chr19:53212371-53212372	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs149916305	chr19:53212419-53212420	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs145322084	chr19:53212440-53212441	Weak transcription Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs116635476	chr19:53212520-53212521	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs114336405	chr19:53212559-53212560	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs566542770	chr19:53212566-53212567	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs533796270	chr19:53212595-53212596	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs559824690	chr19:53212600-53212601	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs532528513	chr19:53212608-53212609	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs149200219	chr19:53212613-53212614	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs547987950	chr19:53212642-53212643	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Adrenocortical carcinoma	18281524	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:5507 , 50 per page) page: 1 2 3 4 5 6 7 ... 111

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53194800-53218800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:53202800-53217400	ZNF genes & repeats	Liver	Liver
3	chr19:53205600-53217400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr19:53206400-53212200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr19:53206600-53217800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr19:53206600-53227200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr19:53206800-53214000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr19:53207200-53211600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr19:53207200-53211800	ZNF genes & repeats	Thymus	Thymus
10	chr19:53207200-53212200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:53207200-53215400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr19:53207200-53217600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr19:53207200-53218800	Strong transcription	Placenta	Placenta
14	chr19:53207400-53212200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr19:53207400-53214600	Weak transcription	Stomach Mucosa	stomach
16	chr19:53207400-53216400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr19:53207400-53219400	Strong transcription	Dnd41	blood
18	chr19:53207600-53211800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
19	chr19:53207600-53212200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr19:53207600-53216000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr19:53207800-53211800	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr19:53207800-53212200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr19:53207800-53212400	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr19:53208000-53212000	Strong transcription	Brain Angular Gyrus	brain
25	chr19:53208000-53212400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
26	chr19:53208000-53212400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr19:53208000-53216400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
28	chr19:53208200-53211600	Strong transcription	Rectal Smooth Muscle	rectum
29	chr19:53208200-53211800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
30	chr19:53208200-53211800	Strong transcription	Left Ventricle	heart
31	chr19:53208200-53219400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr19:53208400-53212000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr19:53208400-53212400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
34	chr19:53208400-53216000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
35	chr19:53208400-53217400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr19:53208400-53218800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr19:53208600-53213200	Weak transcription	Pancreas	Pancrea
38	chr19:53208600-53213600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
39	chr19:53208600-53214000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
40	chr19:53208800-53212000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
41	chr19:53208800-53212000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
42	chr19:53208800-53213800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
43	chr19:53209000-53213000	Weak transcription	Brain Germinal Matrix	brain
44	chr19:53209400-53214600	Weak transcription	Fetal Brain Female	brain
45	chr19:53209400-53225800	Weak transcription	Hela-S3	cervix
46	chr19:53209600-53211400	Strong transcription	Adipose Nuclei	Adipose
47	chr19:53209600-53211800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr19:53209600-53213200	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr19:53209600-53218200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr19:53209600-53219200	Weak transcription	H9 Cell Line	embryonic stem cell

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