Variant report

Variant	nsv8589
Chromosome Location	chr9:141018937-141029038
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:242)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:242 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF3	chr9:141020637-141020864	K562	blood:	n/a	n/a
2	ATF3	chr9:141020689-141020889	GM12878	blood:	n/a	n/a
3	ATF3	chr9:141020692-141020855	GM12878	blood:	n/a	n/a
4	BATF	chr9:141023409-141023594	GM12878	blood:	n/a	n/a
5	BATF	chr9:141020609-141020912	GM12878	blood:	n/a	n/a
6	BCL11A	chr9:141023414-141023612	GM12878	blood:	n/a	n/a
7	CBX3	chr9:141023334-141023686	K562	blood:	n/a	n/a
8	CBX3	chr9:141020423-141021627	K562	blood:	n/a	n/a
9	CBX3	chr9:141020180-141021846	K562	blood:	n/a	n/a
10	CBX3	chr9:141023337-141023724	K562	blood:	n/a	n/a
11	CEBPB	chr9:141020616-141021529	K562	blood:	n/a	n/a
12	CEBPB	chr9:141021040-141021243	GM12878	blood:	n/a	n/a
13	CEBPB	chr9:141020799-141021006	GM12878	blood:	n/a	n/a
14	CEBPB	chr9:141020544-141021559	GM12878	blood:	n/a	n/a
15	CEBPD	chr9:141027620-141027978	K562	blood:	n/a	n/a
16	CTCF	chr9:141020700-141020850	GM12868	blood:	n/a	n/a
17	CTCF	chr9:141020700-141020850	GM12867	blood:	n/a	n/a
18	CTCF	chr9:141026714-141026804	MCF-7	breast:	n/a	n/a
19	CTCF	chr9:141021749-141021805	GM12878	blood:	n/a	n/a
20	CTCF	chr9:141020680-141020830	GM12874	blood:	n/a	n/a
21	CTCF	chr9:141021910-141021993	GM19240	blood:	n/a	n/a
22	CTCF	chr9:141022267-141022338	GM19240	blood:	n/a	n/a
23	CTCF	chr9:141022346-141022463	GM10266	blood:	n/a	n/a
24	CTCF	chr9:141020600-141020750	GM12870	blood:	n/a	n/a
25	CTCF	chr9:141020460-141021840	K562	blood:	n/a	n/a
26	CTCF	chr9:141020680-141020830	HCPEpiC	choroid plexus:	n/a	n/a
27	CTCF	chr9:141020400-141020550	GM12875	blood:	n/a	n/a
28	CTCF	chr9:141020700-141020850	NB4	blood:	n/a	n/a
29	CTCF	chr9:141020440-141020590	GM12870	blood:	n/a	n/a
30	CTCF	chr9:141020640-141020857	HepG2	liver:	n/a	n/a
31	CTCF	chr9:141020700-141020850	GM12871	blood:	n/a	n/a
32	CTCF	chr9:141020680-141020830	GM12864	blood:	n/a	n/a
33	CTCF	chr9:141020687-141020903	T-47D	breast:	n/a	n/a
34	CTCF	chr9:141020684-141020877	T-47D	breast:	n/a	n/a
35	CTCF	chr9:141020380-141020530	GM12865	blood:	n/a	n/a
36	CTCF	chr9:141026700-141026850	GM12865	blood:	n/a	n/a
37	CTCF	chr9:141020887-141021084	ECC-1	luminal epithelium:	n/a	n/a
38	CTCF	chr9:141021155-141021346	HepG2	liver:	n/a	n/a
39	CTCF	chr9:141021191-141021310	HepG2	liver:	n/a	n/a
40	CTCF	chr9:141020400-141020550	GM12867	blood:	n/a	n/a
41	CTCF	chr9:141020151-141022133	K562	blood:	n/a	n/a
42	CTCF	chr9:141020680-141020830	RPTEC	kidney:	n/a	n/a
43	CTCF	chr9:141020670-141021587	A549	lung:	n/a	n/a
44	CTCF	chr9:141020680-141020830	GM12865	blood:	n/a	n/a
45	CTCF	chr9:141020680-141020830	K562	blood:	n/a	n/a
46	CTCF	chr9:141020420-141020570	GM12873	blood:	n/a	n/a
47	CTCF	chr9:141020681-141021107	HepG2	liver:	n/a	n/a
48	CTCF	chr9:141026700-141026850	HEK293	kidney:	n/a	n/a
49	CTCF	chr9:141020680-141020830	HEK293	kidney:	n/a	n/a
50	CTCF	chr9:141027792-141027844	GM10266	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:141022253-141022303	GM06990	blood:	n/a
2	chr9:141022253-141022303	PrEC	prostate:	n/a
3	chr9:141022253-141022303	K562	blood:	n/a
4	chr9:141022253-141022303	GM12891	blood:	n/a
5	chr9:141022253-141022303	Caco-2	colon:	n/a
6	chr9:141022253-141022303	PANC-1	pancreas:	n/a
7	chr9:141022253-141022303	AG09309	skin:	n/a
8	chr9:141022253-141022303	AG04449	skin:	fetal
9	chr9:141022253-141022303	AG04450	lung:	fetal
10	chr9:141022253-141022303	AG10803	skin:	n/a
11	chr9:141022253-141022303	HPAEpiC	pulmonary alveolar:	n/a
12	chr9:141022253-141022303	PFSK-1	brain:	n/a
13	chr9:141022253-141022303	HAEpiC	amniotic membrane:	n/a
14	chr9:141022253-141022303	SK-N-SH_RA	brain:	n/a
15	chr9:141022253-141022303	SKMC	muscle:	n/a
16	chr9:141022253-141022303	HEEpiC	esophagus:	n/a
17	chr9:141022253-141022303	HL-60	blood:	n/a
18	chr9:141022253-141022303	HIPEpiC	eye:	n/a
19	chr9:141022253-141022303	AoSMC	blood vessel:	n/a
20	chr9:141022253-141022303	H1-hESC	embryonic stem cell:	embryo
21	chr9:141022253-141022303	ProgFib	skin:	n/a
22	chr9:141022253-141022303	HCPEpiC	choroid plexus:	n/a
23	chr9:141022253-141022303	HRCEpiC	kidney:	n/a
24	chr9:141022253-141022303	HCM	heart:	n/a
25	chr9:141022253-141022303	HEK293	kidney:	embryo
26	chr9:141022253-141022303	CMK	blood:	n/a
27	chr9:141022253-141022303	HepG2	liver:	n/a
28	chr9:141022253-141022303	U87	brain:	n/a
29	chr9:141022253-141022303	AG09319	gingival:	n/a
30	chr9:141022253-141022303	IMR90	lung:	fetal
31	chr9:141022253-141022303	MCF10A-Er-Src	breast:	n/a
32	chr9:141022253-141022303	HCT-116	colon:	n/a
33	chr9:141022253-141022303	NH-A	brain:	n/a
34	chr9:141022253-141022303	GM19239	blood:	n/a
35	chr9:141022253-141022303	HCF	heart:	n/a
36	chr9:141022253-141022303	HNPCEpiC	eye:	n/a
37	chr9:141022253-141022303	ovcar-3	ovarian:	n/a
38	chr9:141022253-141022303	T-47D	breast:	n/a
39	chr9:141022253-141022303	NHBE	bronchial:	n/a
40	chr9:141022253-141022303	ECC-1	luminal epithelium:	n/a
41	chr9:141022253-141022303	SAEC	small airway:	n/a
42	chr9:141022253-141022303	HMEC	breast:	n/a
43	chr9:141022253-141022303	NT2-D1	testis:	n/a
44	chr9:141022253-141022303	BE2_C	brain:	n/a
45	chr9:141022253-141022303	HUVEC	blood vessel:	n/a
46	chr9:141022253-141022303	NB4	blood:	n/a
47	chr9:141022253-141022303	A549	lung:	n/a
48	chr9:141022253-141022303	LNCaP	prostate:	n/a
49	chr9:141022253-141022303	Jurkat	blood:	n/a
50	chr9:141022253-141022303	GM12878	blood:	n/a

No data

Variant related genes	Relation type
ENSG00000229926	TF binding region
ENSG00000229926	CpG island

Extended variants
information (count: 464 )
Associated
traits (count: 19 )

Variant overlapped rSNPs/rCNVs (count:464 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs202199199	chr9:141018974-141018975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs200216459	chr9:141019025-141019026	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs201023127	chr9:141019028-141019029	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs201872504	chr9:141019059-141019060	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs200282797	chr9:141019061-141019062	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs201517985	chr9:141019082-141019083	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199516803	chr9:141019087-141019088	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs59355635	chr9:141019088-141019089	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs201490962	chr9:141019109-141019110	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs199664992	chr9:141019126-141019127	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs72770922	chr9:141019175-141019176	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112555927	chr9:141019177-141019178	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs72055790	chr9:141019178-141019179	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs34273760	chr9:141019192-141019193	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs60279461	chr9:141019194-141019195	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs550121900	chr9:141019219-141019220	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs543846800	chr9:141019241-141019242	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs111392664	chr9:141019257-141019258	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs549016554	chr9:141019272-141019273	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs186338758	chr9:141019273-141019274	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs12004659	chr9:141019315-141019316	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
22	rs9695260	chr9:141019317-141019318	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs571588953	chr9:141019332-141019333	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs147257449	chr9:141019345-141019346	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs557238405	chr9:141019367-141019368	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs573649174	chr9:141019386-141019387	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs542657813	chr9:141019412-141019413	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs553421170	chr9:141019419-141019420	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs9414686	chr9:141019422-141019423	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs34806902	chr9:141019427-141019428	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs564098050	chr9:141019496-141019497	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs533177459	chr9:141019524-141019525	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs551998089	chr9:141019569-141019570	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs571641660	chr9:141019580-141019581	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs574996177	chr9:141019585-141019586	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs9969819	chr9:141019593-141019594	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs563579225	chr9:141019611-141019612	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs9414685	chr9:141019618-141019619	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
39	rs371600695	chr9:141019620-141019621	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs182433872	chr9:141019668-141019669	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs565754292	chr9:141019681-141019682	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs9969822	chr9:141019705-141019706	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs9969793	chr9:141019766-141019767	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs114770359	chr9:141019771-141019772	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs551478849	chr9:141019789-141019790	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs143393325	chr9:141019791-141019792	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs537248829	chr9:141019796-141019797	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs550857466	chr9:141019799-141019800	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs567657635	chr9:141019880-141019881	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs557371654	chr9:141019910-141019911	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:19)

Disease	PMID	Source
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Mantle cell lymphoma	19029149	CNVD

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140988200-141044600	Weak transcription	Right Atrium	heart
2	chr9:141012600-141022200	Weak transcription	Brain Angular Gyrus	brain
3	chr9:141016800-141019000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr9:141017400-141019000	Weak transcription	Brain Anterior Caudate	brain
5	chr9:141017400-141019000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:141017600-141019200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:141017600-141019400	Weak transcription	Fetal Brain Female	brain
8	chr9:141019000-141020800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr9:141020600-141020800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:141022600-141023400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:141022600-141023400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:141023400-141023800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
13	chr9:141023400-141023800	Active TSS	Breast Myoepithelial Primary Cells	Breast
14	chr9:141023400-141024000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:141023400-141024000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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