Variant report

Variant	nsv872926
Chromosome Location	chr1:195407407-195557047
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:195438395..195441122-chr1:195442393..195443903,2	K562	blood:
2	chr1:195413793..195416066-chr1:195416785..195419173,2	K562	blood:
3	chr1:195502291..195505198-chr1:195514179..195516495,2	K562	blood:
4	chr1:195474802..195477777-chr1:195478958..195481457,2	K562	blood:
5	chr1:195422390..195425246-chr1:195431885..195433646,2	K562	blood:
6	chr1:195502291..195505198-chr1:195514179..195516495,2	K562	blood:
7	chr1:195467909..195469471-chr1:195476696..195479659,2	K562	blood:
8	chr1:195442462..195444603-chr1:195444759..195446417,2	MCF-7	breast:
9	chr1:195514419..195515039-chr5:57606225..57606777,2	MCF-7	breast:
10	chr1:195510518..195512657-chr1:195516239..195517820,2	K562	blood:
11	chr1:195514637..195515437-chr4:98218446..98219186,2	MCF-7	breast:
12	chr1:195518670..195520403-chr1:195533153..195535062,2	K562	blood:
13	chr1:195438395..195441122-chr1:195442393..195443903,2	K562	blood:
14	chr1:195467909..195469471-chr1:195476696..195479659,2	K562	blood:
15	chr1:195553010..195555142-chr1:195558344..195561243,2	K562	blood:
16	chr1:195518670..195520403-chr1:195533153..195535062,2	K562	blood:
17	chr1:195510518..195512657-chr1:195516239..195517820,2	K562	blood:
18	chr1:195413793..195416066-chr1:195416785..195419173,2	K562	blood:
19	chr1:195442462..195444603-chr1:195444759..195446417,2	MCF-7	breast:
20	chr1:195422390..195425246-chr1:195431885..195433646,2	K562	blood:
21	chr1:195474802..195477777-chr1:195478958..195481457,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CFH-1	chr1:195469301-195469368	XLOC_000511
2	lnc-KCNT2-4	chr1:195436980-195437187	expReg_chr1_18917_-
3	lnc-CFH-1	chr1:195450556-195450708	XLOC_000511

No data

Extended variants
information (count: 1179 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:1179 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562813422	chr1:195408201-195408202	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs186624581	chr1:195408225-195408226	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs551632757	chr1:195408245-195408246	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs560112930	chr1:195408255-195408256	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs527447992	chr1:195408304-195408305	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs549218768	chr1:195408323-195408324	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs546517946	chr1:195408332-195408333	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs567706632	chr1:195408349-195408350	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs561598072	chr1:195408382-195408383	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs72740048	chr1:195408402-195408403	Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs552283002	chr1:195408426-195408427	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs571640783	chr1:195408500-195408501	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs538924925	chr1:195408551-195408552	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs76087509	chr1:195408566-195408567	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs116387726	chr1:195408578-195408579	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs574119439	chr1:195408611-195408612	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs141394356	chr1:195408622-195408623	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs536810535	chr1:195408652-195408653	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs565603863	chr1:195408716-195408717	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs555172160	chr1:195408737-195408738	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs573775592	chr1:195408745-195408746	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs544261884	chr1:195408748-195408749	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs556175843	chr1:195408763-195408764	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs544184546	chr1:195408776-195408777	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs577687012	chr1:195408778-195408779	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs544993242	chr1:195408810-195408811	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs562469175	chr1:195408826-195408827	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs570696436	chr1:195408836-195408837	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs529151905	chr1:195408837-195408838	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs113585733	chr1:195408868-195408869	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs527498087	chr1:195408900-195408901	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs542805665	chr1:195408911-195408912	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs193300062	chr1:195408939-195408940	Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs11803020	chr1:195408950-195408951	Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs369084012	chr1:195409001-195409002	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs571329121	chr1:195409010-195409011	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs138915928	chr1:195409018-195409019	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs142047631	chr1:195409025-195409026	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs35983403	chr1:195409037-195409038	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs568526594	chr1:195409116-195409117	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs185476190	chr1:195409135-195409136	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs566643693	chr1:195409140-195409141	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs536491184	chr1:195409150-195409151	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs373352453	chr1:195409155-195409156	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs190370229	chr1:195409175-195409176	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs537963888	chr1:195409203-195409204	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs114597228	chr1:195409243-195409244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs532837546	chr1:195409278-195409279	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs113894228	chr1:195409289-195409290	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs2119440	chr1:195409295-195409296	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:99)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	20688739	CNVD
Breast cancer	21611746	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Trisomy 5 syndrome	21098271	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Mental retardation	21062444	CNVD
Liver carcinoma	19366792	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chordoma	18071362	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Burkitt''s lymphoma	20823134	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD
Recurrent pregnancy loss	19789632	CNVD
early-passage human iPS cells	21368824	CNVD
Intellectual disability	21811512	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195408200-195408400	Enhancers	Adipose Nuclei	Adipose
2	chr1:195408400-195409000	Flanking Active TSS	Adipose Nuclei	Adipose
3	chr1:195409000-195409400	Enhancers	Adipose Nuclei	Adipose
4	chr1:195414000-195414400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:195416000-195418600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:195416600-195417000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:195419800-195420200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:195419800-195421200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:195419800-195421400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:195420000-195421200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr1:195420000-195421800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:195420000-195422000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:195420200-195422000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr1:195420600-195421600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr1:195427000-195427200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:195427200-195427600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:195428000-195428200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:195431600-195432000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:195431800-195432400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:195439800-195440000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:195441200-195441800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr1:195441200-195441800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr1:195441400-195441800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr1:195441400-195441800	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr1:195441600-195442000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:195441800-195444600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr1:195449400-195449600	Enhancers	Adipose Nuclei	Adipose
28	chr1:195450200-195450400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:195450400-195450600	Active TSS	Adipose Nuclei	Adipose
30	chr1:195450400-195450800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:195450400-195451000	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr1:195450400-195451600	Enhancers	Ovary	ovary
33	chr1:195450600-195451000	Flanking Active TSS	Adipose Nuclei	Adipose
34	chr1:195450800-195451000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr1:195451000-195451800	Enhancers	Adipose Nuclei	Adipose
36	chr1:195461600-195463200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:195478200-195478400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr1:195478600-195480200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr1:195480200-195480400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr1:195480400-195484400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:195481200-195481600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr1:195481200-195481600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:195484400-195484800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:195486600-195486800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr1:195487800-195488200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr1:195495400-195496000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr1:195514600-195515400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr1:195517200-195517400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr1:195518400-195519200	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr1:195519200-195519400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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