Variant report

Variant	nsv877561
Chromosome Location	chr3:142152925-142331360
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2744)
CpG islands
(count:2380)
Chromatin interactive
region (count:171)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2744 , 50 per page) page: 1 2 3 4 5 6 7 ... 55

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr3:142314492-142315669	HepG2	liver:	n/a	n/a
2	ARID3A	chr3:142314945-142315362	K562	blood:	n/a	n/a
3	ARID3A	chr3:142297425-142297909	HepG2	liver:	n/a	n/a
4	ARID3A	chr3:142297606-142297816	K562	blood:	n/a	n/a
5	ARID3A	chr3:142166751-142167232	HepG2	liver:	n/a	n/a
6	ARID3A	chr3:142158404-142158601	K562	blood:	n/a	n/a
7	ARID3A	chr3:142305620-142305987	HepG2	liver:	n/a	n/a
8	ARID3A	chr3:142166757-142167391	K562	blood:	n/a	n/a
9	ARID3A	chr3:142155824-142156085	HepG2	liver:	n/a	n/a
10	ARID3A	chr3:142208918-142209055	HepG2	liver:	n/a	n/a
11	ARID3A	chr3:142164561-142164907	HepG2	liver:	n/a	n/a
12	ARID3A	chr3:142164559-142164562	K562	blood:	n/a	n/a
13	ATF1	chr3:142261070-142261144	K562	blood:	n/a	n/a
14	ATF1	chr3:142166651-142167117	K562	blood:	n/a	n/a
15	ATF1	chr3:142158348-142158491	K562	blood:	n/a	n/a
16	ATF2	chr3:142314899-142315326	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF2	chr3:142164617-142165188	GM12878	blood:	n/a	n/a
18	ATF2	chr3:142297296-142297906	H1-hESC	embryonic stem cell:	n/a	n/a
19	ATF2	chr3:142297369-142298083	GM12878	blood:	n/a	n/a
20	ATF2	chr3:142166627-142167059	H1-hESC	embryonic stem cell:	n/a	n/a
21	ATF2	chr3:142166613-142167076	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF2	chr3:142296665-142297253	GM12878	blood:	n/a	n/a
23	ATF2	chr3:142166292-142167285	GM12878	blood:	n/a	n/a
24	ATF2	chr3:142297249-142297908	H1-hESC	embryonic stem cell:	n/a	n/a
25	ATF2	chr3:142314925-142315425	GM12878	blood:	n/a	n/a
26	ATF2	chr3:142166586-142167263	GM12878	blood:	n/a	n/a
27	ATF2	chr3:142305623-142306010	H1-hESC	embryonic stem cell:	n/a	n/a
28	ATF2	chr3:142314955-142315367	H1-hESC	embryonic stem cell:	n/a	n/a
29	ATF2	chr3:142297242-142298410	GM12878	blood:	n/a	n/a
30	ATF3	chr3:142314771-142315450	A549	lung:	n/a	chr3:142315426-142315435
31	ATF3	chr3:142297371-142298043	A549	lung:	n/a	chr3:142297742-142297751
32	ATF3	chr3:142153408-142153662	H1-hESC	embryonic stem cell:	n/a	n/a
33	ATF3	chr3:142166710-142167023	K562	blood:	n/a	n/a
34	ATF3	chr3:142314665-142315432	A549	lung:	n/a	n/a
35	ATF3	chr3:142166680-142167092	H1-hESC	embryonic stem cell:	n/a	n/a
36	ATF3	chr3:142153366-142153651	K562	blood:	n/a	n/a
37	ATF3	chr3:142166739-142166998	HepG2	liver:	n/a	n/a
38	ATF3	chr3:142166731-142166953	GM12878	blood:	n/a	n/a
39	ATF3	chr3:142166732-142167135	K562	blood:	n/a	n/a
40	ATF3	chr3:142153428-142153647	H1-hESC	embryonic stem cell:	n/a	n/a
41	ATF3	chr3:142166666-142167015	H1-hESC	embryonic stem cell:	n/a	n/a
42	ATF3	chr3:142297353-142297927	A549	lung:	n/a	chr3:142297742-142297751
43	BACH1	chr3:142314989-142315328	K562	blood:	n/a	n/a
44	BACH1	chr3:142166917-142167234	H1-hESC	embryonic stem cell:	n/a	n/a
45	BACH1	chr3:142296525-142296543	K562	blood:	n/a	n/a
46	BACH1	chr3:142297319-142297884	H1-hESC	embryonic stem cell:	n/a	n/a
47	BACH1	chr3:142314729-142315608	H1-hESC	embryonic stem cell:	n/a	n/a
48	BATF	chr3:142297399-142297972	GM12878	blood:	n/a	n/a
49	BATF	chr3:142164672-142165015	GM12878	blood:	n/a	n/a
50	BATF	chr3:142164703-142164947	GM12878	blood:	n/a	n/a

(count:2380 , 50 per page) page: 1 2 3 4 5 6 7 ... 48

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:142169703-142169753	NT2-D1	testis:	n/a
2	chr3:142169703-142169753	NT2-D1	testis:	n/a
3	chr3:142315566-142315616	HRE	kidney:	n/a
4	chr3:142315207-142315257	BE2_C	brain:	n/a
5	chr3:142297929-142297979	HCF	heart:	n/a
6	chr3:142315207-142315257	HPAEpiC	pulmonary alveolar:	n/a
7	chr3:142166531-142166581	AG04449	skin:	fetal
8	chr3:142297929-142297979	SK-N-MC	brain:	n/a
9	chr3:142315207-142315257	HUVEC	blood vessel:	n/a
10	chr3:142166793-142166843	NH-A	brain:	n/a
11	chr3:142166793-142166843	PANC-1	pancreas:	n/a
12	chr3:142316082-142316132	Caco-2	colon:	n/a
13	chr3:142167057-142167107	AG09319	gingival:	n/a
14	chr3:142318115-142318165	A549	lung:	n/a
15	chr3:142315220-142315270	BJ	skin:	n/a
16	chr3:142166793-142166843	NT2-D1	testis:	n/a
17	chr3:142297905-142297955	AG09319	gingival:	n/a
18	chr3:142296671-142296721	HAEpiC	amniotic membrane:	n/a
19	chr3:142297737-142297787	HRPEpiC	eye:	n/a
20	chr3:142314968-142315018	ovcar-3	ovarian:	n/a
21	chr3:142314493-142314543	HEEpiC	esophagus:	n/a
22	chr3:142297747-142297797	HCPEpiC	choroid plexus:	n/a
23	chr3:142312840-142312890	NH-A	brain:	n/a
24	chr3:142297635-142297685	HCT-116	colon:	n/a
25	chr3:142166793-142166843	H1-hESC	embryonic stem cell:	embryo
26	chr3:142314968-142315018	HRE	kidney:	n/a
27	chr3:142315220-142315270	AG09319	gingival:	n/a
28	chr3:142315326-142315376	CMK	blood:	n/a
29	chr3:142315207-142315257	SK-N-SH_RA	brain:	n/a
30	chr3:142166531-142166581	GM19239	blood:	n/a
31	chr3:142165032-142165082	HCM	heart:	n/a
32	chr3:142166793-142166843	HRE	kidney:	n/a
33	chr3:142315213-142315263	HRPEpiC	eye:	n/a
34	chr3:142318115-142318165	SAEC	small airway:	n/a
35	chr3:142296843-142296893	SK-N-MC	brain:	n/a
36	chr3:142165032-142165082	GM06990	blood:	n/a
37	chr3:142165032-142165082	SK-N-MC	brain:	n/a
38	chr3:142297771-142297821	T-47D	breast:	n/a
39	chr3:142297641-142297691	SK-N-SH	brain:	n/a
40	chr3:142296843-142296893	HEEpiC	esophagus:	n/a
41	chr3:142315213-142315263	Hepatocyte	liver:	n/a
42	chr3:142166203-142166253	NHDF-neo	bronchial:	n/a
43	chr3:142297747-142297797	SK-N-SH	brain:	n/a
44	chr3:142294184-142294234	NB4	blood:	n/a
45	chr3:142165032-142165082	SAEC	small airway:	n/a
46	chr3:142315064-142315114	PANC-1	pancreas:	n/a
47	chr3:142166793-142166843	GM12892	blood:	n/a
48	chr3:142315326-142315376	AG10803	skin:	n/a
49	chr3:142296843-142296893	AG10803	skin:	n/a
50	chr3:142297747-142297797	LNCaP	prostate:	n/a

(count:171 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr3:142312229..142317018-chr3:142442889..142445391,9	K562	blood:
2	chr3:142154895..142157522-chr3:142161051..142162570,2	K562	blood:
3	chr3:142280626..142283157-chr3:142296079..142299039,3	K562	blood:
4	chr3:142221745..142223373-chr3:142285789..142288084,2	K562	blood:
5	chr3:142295506..142297981-chr3:142837321..142839389,2	K562	blood:
6	chr3:142297949..142299634-chr3:142710792..142712643,2	MCF-7	breast:
7	chr3:142296149..142300233-chr3:142313670..142315817,6	K562	blood:
8	chr3:142314594..142316783-chr3:142317618..142320716,5	K562	blood:
9	chr3:142277765..142280568-chr3:142293592..142296429,2	K562	blood:
10	chr3:142166774..142168881-chr3:142175818..142179023,4	MCF-7	breast:
11	chr3:142284629..142286922-chr3:142296267..142299149,2	K562	blood:
12	chr3:142145904..142149296-chr3:142151128..142153785,4	K562	blood:
13	chr3:51976453..51977286-chr3:142296953..142297627,2	Hela-S3	cervix:
14	chr19:4400062..4400737-chr3:142314856..142315795,2	HCT-116	colon:
15	chr3:142294183..142301262-chr3:142311308..142318922,13	MCF-7	breast:
16	chr3:142319541..142323718-chr3:142324179..142327610,6	MCF-7	breast:
17	chr3:142219298..142222317-chr3:142296108..142299028,3	MCF-7	breast:
18	chr3:142186201..142188360-chr3:142189453..142190962,2	K562	blood:
19	chr3:142297625..142299268-chr3:142441632..142444151,3	K562	blood:
20	chr3:142280626..142282527-chr3:142296623..142299039,2	K562	blood:
21	chr3:142173107..142175736-chr3:142179768..142182228,2	K562	blood:
22	chr3:142318139..142320851-chr3:142442948..142445184,2	K562	blood:
23	chr3:142327437..142329233-chr3:142329424..142330960,2	K562	blood:
24	chr3:142297125..142298039-chr6:32162879..32163754,2	HCT-116	colon:
25	chr3:142164765..142166960-chr3:142189962..142191863,2	K562	blood:
26	chr3:142221679..142224091-chr3:142224480..142227084,2	K562	blood:
27	chr3:142284471..142287739-chr3:142296498..142299510,3	MCF-7	breast:
28	chr3:142165499..142167998-chr3:142184965..142186898,2	MCF-7	breast:
29	chr3:142313218..142314887-chr3:142348977..142351077,2	K562	blood:
30	chr3:106647215..106647782-chr3:142305386..142306279,2	MCF-7	breast:
31	chr3:142226820..142229052-chr3:142234427..142237247,3	K562	blood:
32	chr3:142322302..142325692-chr3:142327995..142330616,3	K562	blood:
33	chr3:142280147..142283141-chr3:142285094..142287715,3	K562	blood:
34	chr3:142267438..142270247-chr3:142280572..142282585,2	MCF-7	breast:
35	chr3:142167068..142168704-chr3:142178358..142179911,2	K562	blood:
36	chr3:142293878..142296347-chr3:142313547..142315332,2	K562	blood:
37	chr3:142223658..142226531-chr3:142293631..142295358,2	K562	blood:
38	chr3:142297625..142299268-chr3:142441632..142445353,4	K562	blood:
39	chr3:142303600..142305532-chr3:142667653..142669421,2	K562	blood:
40	chr3:142312435..142314889-chr3:142442565..142445180,3	MCF-7	breast:
41	chr3:142305364..142306466-chr3:142399184..142400223,7	MCF-7	breast:
42	chr3:142154895..142157522-chr3:142161051..142162570,2	K562	blood:
43	chr2:54342142..54342878-chr3:142296360..142297208,2	Hela-S3	cervix:
44	chr3:142205435..142207089-chr3:142209696..142212453,2	K562	blood:
45	chr15:90808753..90809542-chr3:142296981..142297883,2	Hela-S3	cervix:
46	chr3:142153615..142157522-chr3:142160803..142162570,3	K562	blood:
47	chr3:142246869..142249118-chr3:142259250..142261613,2	K562	blood:
48	chr3:142272907..142275901-chr3:142280170..142282746,2	MCF-7	breast:
49	chr17:27046573..27047488-chr3:142297296..142298228,2	Hela-S3	cervix:
50	chr3:142165889..142168366-chr3:142183445..142185488,2	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLS1-1	chr3:142300147-142300816	NONHSAT092476
2	lnc-XRN1-1	chr3:142184157-142184653	ENSG00000244327.1
3	lnc-XRN1-1	chr3:142190912-142191179	ENSG00000244327.1
4	lnc-PLS1-1	chr3:142301137-142301241	NONHSAT092476
5	lnc-PLS1-4	chr3:142169997-142170968	expReg_chr3_9541_+
6	lnc-PLS1-3	chr3:142171318-142171592	expReg_chr3_9542_+
7	lnc-PLS1-1	chr3:142299752-142299835	NONHSAT092476
8	lnc-PLS1-5	chr3:142168990-142169199	expReg_chr3_9540_+

No data

Variant related genes	Relation type
ENSG00000244327	TF binding region
RPL6P9	TF binding region
RNA5SP143	TF binding region
ATR	TF binding region
ENSG00000242479	TF binding region
XRN1	TF binding region
ENSG00000255637	TF binding region
PLS1	TF binding region
ENSG00000244327	CpG island
RPL6P9	CpG island
RNA5SP143	CpG island
ATR	CpG island
ENSG00000242479	CpG island
XRN1	CpG island
ENSG00000255637	CpG island
PLS1	CpG island
ENSG00000241570	chromatin interactions
ENSG00000141985	chromatin interactions
ENSG00000091527	chromatin interactions
ENSG00000156599	chromatin interactions
ENSG00000129696	chromatin interactions
ENSG00000170634	chromatin interactions
ENSG00000188582	chromatin interactions
ENSG00000244024	chromatin interactions
ENSG00000120756	chromatin interactions
ENSG00000252745	chromatin interactions
ENSG00000175040	chromatin interactions
ENSG00000113048	chromatin interactions
ENSG00000176845	chromatin interactions
ENSG00000114127	chromatin interactions
ENSG00000268129	chromatin interactions
ENSG00000049883	chromatin interactions
ENSG00000163714	chromatin interactions
ENSG00000121774	chromatin interactions
ENSG00000244327	chromatin interactions
ENSG00000041880	chromatin interactions
ENSG00000117298	chromatin interactions
ENSG00000114126	chromatin interactions
ENSG00000175387	chromatin interactions
ENSG00000065150	chromatin interactions
ENSG00000144935	chromatin interactions
ENSG00000213654	chromatin interactions
ENSG00000153395	chromatin interactions
ENSG00000103275	chromatin interactions
ENSG00000182768	chromatin interactions
ENSG00000198242	chromatin interactions
ENSG00000242479	chromatin interactions
ENSG00000242390	chromatin interactions
ENSG00000175054	chromatin interactions

Extended variants
information (count: 6498 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:6498 , 50 per page) page: 1 2 3 4 5 6 7 ... 130

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6808413	chr3:142152925-142152926	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs559825554	chr3:142152935-142152936	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs576637554	chr3:142152942-142152943	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs533368980	chr3:142152983-142152984	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs537345336	chr3:142152985-142152986	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs61220353	chr3:142152995-142152996	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs545392490	chr3:142152999-142153000	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs544128475	chr3:142153013-142153014	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs149864593	chr3:142153029-142153030	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs563789460	chr3:142153052-142153053	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs530894747	chr3:142153173-142153174	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs55720941	chr3:142153196-142153197	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs76375014	chr3:142153213-142153214	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs529230970	chr3:142153236-142153237	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs542797743	chr3:142153239-142153240	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs113294235	chr3:142153240-142153241	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs192284698	chr3:142153260-142153261	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs539064807	chr3:142153306-142153307	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs557295446	chr3:142153321-142153322	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs569765285	chr3:142153323-142153324	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs62276419	chr3:142153335-142153336	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs35949325	chr3:142153338-142153339	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs377397339	chr3:142153351-142153352	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs371969192	chr3:142153353-142153354	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs536723922	chr3:142153384-142153385	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs556322929	chr3:142153386-142153387	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs184297085	chr3:142153444-142153445	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs11925693	chr3:142153453-142153454	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs187886287	chr3:142153521-142153522	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs150374174	chr3:142153525-142153526	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs192598311	chr3:142153571-142153572	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs545454204	chr3:142153674-142153675	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs138223849	chr3:142153712-142153713	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs185554027	chr3:142153720-142153721	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs542746986	chr3:142153754-142153755	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs78593032	chr3:142153795-142153796	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs529083730	chr3:142153813-142153814	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs368736149	chr3:142153855-142153856	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs189210752	chr3:142153887-142153888	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs368639622	chr3:142153894-142153895	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs533040714	chr3:142153903-142153904	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs142330210	chr3:142153960-142153961	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs180684096	chr3:142153963-142153964	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs112588112	chr3:142153966-142153967	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs184974809	chr3:142153975-142153976	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs567327850	chr3:142153976-142153977	Weak transcription Strong transcription Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs535247074	chr3:142154003-142154004	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs139053294	chr3:142154007-142154008	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs558870844	chr3:142154055-142154056	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs149365577	chr3:142154064-142154065	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
microdeletion syndrome	22180640	CNVD
Basal cell lymphoma	21115979	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	18645599	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Hepatocellular carcinoma	16750200	CNVD
Lung cancer	16740712	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Blepharophimosis-ptosis-epicanthus inversus syndrome	22067867	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
abnormal development	18461090	CNVD
Cancer	21129771	CNVD
Ovarian cancer	23621864	CNVD
Breast cancer	21364760	CNVD
Congenital anomalies of the kidney and urinary tract	20605837	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:5138 , 50 per page) page: 1 2 3 4 5 6 7 ... 103

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142083600-142158600	Weak transcription	NHEK	skin
2	chr3:142112200-142154600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:142127400-142159600	Weak transcription	Psoas Muscle	Psoas
4	chr3:142131600-142156000	Weak transcription	Fetal Heart	heart
5	chr3:142136400-142157400	Weak transcription	HMEC	breast
6	chr3:142138600-142158600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:142138600-142164600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:142138800-142163000	Weak transcription	Spleen	Spleen
9	chr3:142139400-142156200	Weak transcription	Small Intestine	intestine
10	chr3:142139400-142157000	Weak transcription	Brain Germinal Matrix	brain
11	chr3:142139400-142158600	Weak transcription	Pancreas	Pancrea
12	chr3:142139400-142163200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:142141200-142157000	Weak transcription	Esophagus	oesophagus
14	chr3:142141600-142162400	Weak transcription	Brain Angular Gyrus	brain
15	chr3:142142200-142165400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:142142400-142153400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:142142800-142153200	Weak transcription	HUVEC	blood vessel
18	chr3:142146600-142164200	Weak transcription	Stomach Mucosa	stomach
19	chr3:142149000-142162600	Weak transcription	Brain Substantia Nigra	brain
20	chr3:142149600-142153200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr3:142149800-142165000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:142150000-142156000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:142150000-142162000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr3:142150000-142162200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr3:142150000-142163200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr3:142150000-142164000	Weak transcription	NHDF-Ad	bronchial
27	chr3:142150000-142164400	Weak transcription	Aorta	Aorta
28	chr3:142150000-142164600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:142150200-142155000	Weak transcription	Fetal Kidney	kidney
30	chr3:142150200-142155400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr3:142150200-142155400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:142150200-142156200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr3:142150200-142156400	Weak transcription	Fetal Brain Female	brain
34	chr3:142150200-142156400	Weak transcription	NHLF	lung
35	chr3:142150200-142162000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr3:142150200-142162200	Weak transcription	Colon Smooth Muscle	Colon
37	chr3:142150200-142162600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr3:142150200-142163200	Weak transcription	Colonic Mucosa	Colon
39	chr3:142150200-142164000	Weak transcription	Fetal Brain Male	brain
40	chr3:142150200-142164400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr3:142150200-142164400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:142150200-142164600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:142150200-142164600	Weak transcription	HSMMtube	muscle
44	chr3:142150400-142153200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr3:142150400-142154000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr3:142150400-142154600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr3:142150400-142155000	Weak transcription	Duodenum Mucosa	Duodenum
48	chr3:142150400-142156200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr3:142150400-142158600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr3:142150400-142158600	Weak transcription	Primary hematopoietic stem cells	blood

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