Variant report

Variant	nsv883390
Chromosome Location	chr6:2265344-2584919
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2476)
CpG islands
(count:2200)
Chromatin interactive
region (count:116)
LncRNA
region (count:170)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2476 , 50 per page) page: 1 2 3 4 5 6 7 ... 50

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:2354162-2354475	K562	blood:	n/a	n/a
2	ARID3A	chr6:2515104-2516002	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:2504252-2504713	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:2524360-2524698	HepG2	liver:	n/a	n/a
5	ARID3A	chr6:2354111-2354550	HepG2	liver:	n/a	n/a
6	ARID3A	chr6:2542637-2542671	K562	blood:	n/a	n/a
7	ARID3A	chr6:2293538-2293631	HepG2	liver:	n/a	n/a
8	ARID3A	chr6:2565745-2566118	HepG2	liver:	n/a	n/a
9	ATF1	chr6:2542994-2543574	K562	blood:	n/a	n/a
10	ATF1	chr6:2449093-2449530	K562	blood:	n/a	n/a
11	ATF1	chr6:2506021-2506096	K562	blood:	n/a	n/a
12	ATF2	chr6:2563827-2564254	GM12878	blood:	n/a	n/a
13	ATF2	chr6:2448968-2449569	H1-hESC	embryonic stem cell:	n/a	n/a
14	ATF3	chr6:2449106-2449597	K562	blood:	n/a	chr6:2449420-2449427 chr6:2449420-2449428 chr6:2449420-2449430 chr6:2449417-2449430 chr6:2449417-2449427 chr6:2449416-2449429 chr6:2449417-2449427 chr6:2449417-2449430 chr6:2449418-2449429 chr6:2449418-2449431 chr6:2449420-2449431 chr6:2449419-2449427 chr6:2449420-2449430 chr6:2449419-2449430 chr6:2449416-2449431
15	ATF3	chr6:2543025-2543501	K562	blood:	n/a	n/a
16	BACH1	chr6:2568539-2568612	H1-hESC	embryonic stem cell:	n/a	n/a
17	BACH1	chr6:2543058-2543368	K562	blood:	n/a	n/a
18	BACH1	chr6:2271489-2271498	H1-hESC	embryonic stem cell:	n/a	n/a
19	BATF	chr6:2563742-2564279	GM12878	blood:	n/a	n/a
20	BATF	chr6:2563843-2564255	GM12878	blood:	n/a	n/a
21	BATF	chr6:2387834-2388054	GM12878	blood:	n/a	chr6:2387979-2387990
22	BCL11A	chr6:2310374-2310685	GM12878	blood:	n/a	n/a
23	BCL11A	chr6:2563821-2564236	GM12878	blood:	n/a	chr6:2564170-2564179
24	BCL3	chr6:2504235-2504688	A549	lung:	n/a	n/a
25	BCL3	chr6:2515032-2515574	A549	lung:	n/a	chr6:2515323-2515331
26	BCL3	chr6:2504249-2504689	A549	lung:	n/a	n/a
27	BCLAF1	chr6:2563877-2564196	GM12878	blood:	n/a	chr6:2564170-2564179
28	BHLHE40	chr6:2459548-2459580	K562	blood:	n/a	n/a
29	BHLHE40	chr6:2543036-2543538	K562	blood:	n/a	n/a
30	BHLHE40	chr6:2515117-2515648	HepG2	liver:	n/a	n/a
31	BHLHE40	chr6:2471757-2471984	HepG2	liver:	n/a	n/a
32	BHLHE40	chr6:2354172-2354385	K562	blood:	n/a	n/a
33	BHLHE40	chr6:2275952-2276150	K562	blood:	n/a	chr6:2276045-2276054 chr6:2276045-2276054
34	BHLHE40	chr6:2546648-2546685	K562	blood:	n/a	n/a
35	BHLHE40	chr6:2542758-2542832	K562	blood:	n/a	n/a
36	BHLHE40	chr6:2370007-2370209	K562	blood:	n/a	n/a
37	BHLHE40	chr6:2471697-2472079	HepG2	liver:	n/a	n/a
38	BHLHE40	chr6:2524429-2524743	HepG2	liver:	n/a	n/a
39	BHLHE40	chr6:2563996-2564042	GM12878	blood:	n/a	n/a
40	BHLHE40	chr6:2565751-2566075	HepG2	liver:	n/a	n/a
41	BHLHE40	chr6:2449207-2449360	K562	blood:	n/a	n/a
42	BRCA1	chr6:2476493-2476920	Hela-S3	cervix:	n/a	n/a
43	BRCA1	chr6:2449010-2449416	H1-hESC	embryonic stem cell:	n/a	n/a
44	BRCA1	chr6:2352445-2352586	Hela-S3	cervix:	n/a	n/a
45	BRCA1	chr6:2467452-2467460	GM12878	blood:	n/a	n/a
46	BRCA1	chr6:2316936-2316962	GM12878	blood:	n/a	n/a
47	BRCA1	chr6:2354106-2354438	H1-hESC	embryonic stem cell:	n/a	n/a
48	BRCA1	chr6:2515272-2515630	HepG2	liver:	n/a	n/a
49	BRCA1	chr6:2582251-2582252	GM12878	blood:	n/a	n/a
50	CBX3	chr6:2378449-2378935	HCT-116	colon:	n/a	n/a

(count:2200 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:2528653-2528703	SK-N-MC	brain:	n/a
2	chr6:2437147-2437197	HRPEpiC	eye:	n/a
3	chr6:2375851-2375901	BJ	skin:	n/a
4	chr6:2437147-2437197	GM06990	blood:	n/a
5	chr6:2528653-2528703	SK-N-MC	brain:	n/a
6	chr6:2437147-2437197	HRPEpiC	eye:	n/a
7	chr6:2375851-2375901	BJ	skin:	n/a
8	chr6:2437147-2437197	GM06990	blood:	n/a
9	chr6:2534839-2534889	RPTEC	kidney:	n/a
10	chr6:2413556-2413606	ECC-1	luminal epithelium:	n/a
11	chr6:2553610-2553660	SK-N-SH_RA	brain:	n/a
12	chr6:2415343-2415393	Hepatocyte	liver:	n/a
13	chr6:2515337-2515387	GM06990	blood:	n/a
14	chr6:2382649-2382699	SK-N-MC	brain:	n/a
15	chr6:2449276-2449326	HCF	heart:	n/a
16	chr6:2413556-2413606	NT2-D1	testis:	n/a
17	chr6:2510637-2510687	ovcar-3	ovarian:	n/a
18	chr6:2415405-2415455	IMR90	lung:	fetal
19	chr6:2377700-2377750	Hepatocyte	liver:	n/a
20	chr6:2515297-2515347	Hela-S3	cervix:	n/a
21	chr6:2510144-2510194	IMR90	lung:	fetal
22	chr6:2510586-2510636	SK-N-SH_RA	brain:	n/a
23	chr6:2415850-2415900	HEK293	kidney:	embryo
24	chr6:2415405-2415455	HCM	heart:	n/a
25	chr6:2382649-2382699	HAEpiC	amniotic membrane:	n/a
26	chr6:2564711-2564761	Hepatocyte	liver:	n/a
27	chr6:2510507-2510557	AoSMC	blood vessel:	n/a
28	chr6:2437142-2437192	HPAEpiC	pulmonary alveolar:	n/a
29	chr6:2352968-2353018	GM12891	blood:	n/a
30	chr6:2510507-2510557	HCPEpiC	choroid plexus:	n/a
31	chr6:2397671-2397721	PrEC	prostate:	n/a
32	chr6:2542813-2542863	PANC-1	pancreas:	n/a
33	chr6:2375851-2375901	MCF-7	breast:	n/a
34	chr6:2534839-2534889	HIPEpiC	eye:	n/a
35	chr6:2515318-2515368	LNCaP	prostate:	n/a
36	chr6:2415343-2415393	GM12878	blood:	n/a
37	chr6:2449276-2449326	NHBE	bronchial:	n/a
38	chr6:2510507-2510557	RPTEC	kidney:	n/a
39	chr6:2510637-2510687	AG04449	skin:	fetal
40	chr6:2467820-2467870	AG09309	skin:	n/a
41	chr6:2553610-2553660	HNPCEpiC	eye:	n/a
42	chr6:2510507-2510557	SK-N-SH	brain:	n/a
43	chr6:2297047-2297097	A549	lung:	n/a
44	chr6:2397671-2397721	AG09319	gingival:	n/a
45	chr6:2553610-2553660	NB4	blood:	n/a
46	chr6:2553610-2553660	SK-N-MC	brain:	n/a
47	chr6:2467820-2467870	HPAEpiC	pulmonary alveolar:	n/a
48	chr6:2415405-2415455	ProgFib	skin:	n/a
49	chr6:2510173-2510223	ProgFib	skin:	n/a
50	chr6:2579591-2579641	CMK	blood:	n/a

(count:116 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr6:1610116..1611823-chr6:2442447..2444389,2	MCF-7	breast:
2	chr6:2406407..2408708-chr6:2411447..2413753,2	K562	blood:
3	chr6:2475196..2478313-chr6:2486828..2490420,3	MCF-7	breast:
4	chr6:1604656..1605296-chr6:2353868..2354569,4	MCF-7	breast:
5	chr6:2244221..2245990-chr6:2413292..2415770,2	K562	blood:
6	chr6:2517392..2519024-chr6:2528480..2531775,3	K562	blood:
7	chr6:2368647..2371784-chr6:2373502..2376486,4	K562	blood:
8	chr6:2413985..2416473-chr6:2426217..2428226,2	K562	blood:
9	chr6:2504947..2507433-chr6:2507608..2510549,2	K562	blood:
10	chr6:2382708..2384223-chr6:2394952..2397063,2	MCF-7	breast:
11	chr6:2209417..2210065-chr6:2353870..2354459,2	MCF-7	breast:
12	chr6:2456765..2458829-chr6:2461564..2463147,2	MCF-7	breast:
13	chr6:2466043..2468777-chr6:2499549..2502300,2	MCF-7	breast:
14	chr6:2456765..2458829-chr6:2461564..2463147,2	MCF-7	breast:
15	chr6:2209266..2210149-chr6:2448969..2449652,2	MCF-7	breast:
16	chr6:2494300..2496388-chr6:2496623..2498700,2	K562	blood:
17	chr6:2353810..2354693-chr6:2448790..2449627,3	MCF-7	breast:
18	chr6:2550451..2552491-chr6:2564529..2566823,2	K562	blood:
19	chr6:2448825..2449584-chr6:2634344..2635312,4	MCF-7	breast:
20	chr6:2465340..2466900-chr6:2469120..2471895,2	MCF-7	breast:
21	chr6:2208755..2210162-chr6:2353819..2354792,15	MCF-7	breast:
22	chr6:1596186..1596789-chr6:2396672..2397233,2	MCF-7	breast:
23	chr6:2465340..2466900-chr6:2469120..2471895,2	MCF-7	breast:
24	chr6:2477878..2480684-chr6:2482615..2484893,2	MCF-7	breast:
25	chr6:2243938..2247142-chr6:2264459..2268782,4	MCF-7	breast:
26	chr6:2424842..2426390-chr6:2428236..2430027,2	MCF-7	breast:
27	chr6:2472043..2474360-chr6:2475809..2478133,2	MCF-7	breast:
28	chr6:1596198..1597096-chr6:2448736..2449270,3	K562	blood:
29	chr6:2475196..2478313-chr6:2486828..2490420,3	MCF-7	breast:
30	chr6:2559019..2563261-chr6:2563426..2567024,4	K562	blood:
31	chr6:2263398..2266340-chr6:2266756..2269445,2	K562	blood:
32	chr6:2550331..2551216-chr7:122254724..122255448,2	MCF-7	breast:
33	chr6:2271315..2274254-chr6:2275428..2277521,2	K562	blood:
34	chr6:2353810..2354693-chr6:2448790..2449627,3	MCF-7	breast:
35	chr6:2517289..2519001-chr6:2527239..2529750,2	K562	blood:
36	chr6:2263398..2266340-chr6:2266756..2269445,2	K562	blood:
37	chr6:1607913..1609589-chr6:2471423..2474239,2	MCF-7	breast:
38	chr6:1596534..1597143-chr6:2353875..2354387,2	MCF-7	breast:
39	chr6:2373039..2375063-chr6:2375225..2378148,2	K562	blood:
40	chr6:2472043..2474360-chr6:2475809..2478133,2	MCF-7	breast:
41	chr6:2530565..2533308-chr6:2535444..2537955,3	MCF-7	breast:
42	chr6:2396597..2398652-chr6:2400293..2401857,2	K562	blood:
43	chr6:2533337..2536824-chr6:2537851..2541425,4	MCF-7	breast:
44	chr6:2460314..2461251-chr6:2634607..2635154,2	K562	blood:
45	chr6:2517539..2519925-chr6:2522271..2524518,2	K562	blood:
46	chr6:2459163..2462032-chr6:2462249..2463866,2	MCF-7	breast:
47	chr6:2448902..2449578-chr6:2695787..2696287,2	MCF-7	breast:
48	chr6:2357336..2360924-chr6:2363674..2365844,4	K562	blood:
49	chr6:2575507..2578280-chr6:2606067..2608515,3	K562	blood:
50	chr6:2119577..2122402-chr6:2352666..2355381,2	MCF-7	breast:

(count:170 , 50 per page) page: 1 2 3 4

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WRNIP1-2	chr6:2399197-2399254	ucscGeneNc_uc003mtu_1
2	lnc-C6orf195-8	chr6:2532096-2532370	NONHSAT106691
3	lnc-WRNIP1-28	chr6:2552163-2553758	NONHSAT106695
4	lnc-WRNIP1-2	chr6:2399117-2399271	XLOC_005127
5	lnc-WRNIP1-2	chr6:2398811-2399012	XLOC_005127
6	lnc-C6orf195-7	chr6:2562181-2564377	NONHSAT106696
7	lnc-WRNIP1-32	chr6:2467286-2468881	NONHSAT106680
8	lnc-WRNIP1-32	chr6:2462677-2462799	NONHSAT106680
9	lnc-WRNIP1-2	chr6:2452645-2452794	ENSG00000250903.4
10	lnc-C6orf195-16	chr6:2472943-2473229	NONHSAT106681
11	lnc-C6orf195-17	chr6:2439156-2439188	NONHSAT106676
12	lnc-WRNIP1-2	chr6:2481068-2481352	ENSG00000250903.4
13	lnc-WRNIP1-35	chr6:2358463-2359660	NONHSAT106651
14	lnc-GMDS-5	chr6:2273526-2273562	NONHSAT106634
15	lnc-WRNIP1-2	chr6:2398811-2399012	XLOC_005127
16	lnc-C6orf195-17	chr6:2438653-2438951	NONHSAT106676
17	lnc-WRNIP1-29	chr6:2536690-2536999	NONHSAT106694
18	lnc-WRNIP1-2	chr6:2398811-2399000	ENSG00000250903
19	lnc-WRNIP1-2	chr6:2481068-2481403	XLOC_005127
20	lnc-WRNIP1-2	chr6:2397580-2397860	NONHSAT106659
21	lnc-WRNIP1-2	chr6:2481068-2481403	ENSG00000250903.4
22	lnc-WRNIP1-2	chr6:2454198-2454255	XLOC_005127
23	lnc-WRNIP1-2	chr6:2398811-2399012	ENSG00000250903.4
24	lnc-WRNIP1-2	chr6:2413014-2413773	XLOC_005127
25	lnc-C6orf195-18	chr6:2441286-2441546	NONHSAT106675
26	lnc-WRNIP1-2	chr6:2454198-2454255	XLOC_005127
27	lnc-WRNIP1-2	chr6:2399100-2399271	XLOC_005127
28	lnc-GMDS-5	chr6:2273579-2273651	NONHSAT106634
29	lnc-WRNIP1-2	chr6:2283751-2283816	XLOC_005126
30	lnc-C6orf195-10	chr6:2523956-2523988	NONHSAT106689
31	lnc-WRNIP1-2	chr6:2403917-2404226	NONHSAT106666
32	lnc-WRNIP1-2	chr6:2413014-2413825	NONHSAT106620
33	lnc-WRNIP1-2	chr6:2481068-2481219	XLOC_005127
34	lnc-C6orf195-14	chr6:2481107-2481680	NONHSAT106683
35	lnc-C6orf195-5	chr6:2571490-2571735	NONHSAT106698
36	lnc-WRNIP1-2	chr6:2398209-2398535	XLOC_005127
37	lnc-WRNIP1-2	chr6:2269932-2270248	XLOC_005126
38	lnc-WRNIP1-30	chr6:2500482-2500604	NONHSAT106687
39	lnc-WRNIP1-32	chr6:2465996-2467591	NONHSAT106678
40	lnc-GMDS-5	chr6:2271891-2271926	NONHSAT106634
41	lnc-WRNIP1-2	chr6:2404494-2404522	NONHSAT106659
42	lnc-C6orf195-10	chr6:2527363-2527623	NONHSAT106689
43	lnc-GMDS-5	chr6:2271947-2272620	NONHSAT106634
44	lnc-C6orf195-12	chr6:2489875-2490173	NONHSAT106685
45	lnc-GMDS-12	chr6:2433859-2434145	NONHSAT106668
46	lnc-WRNIP1-33	chr6:2437783-2438483	ENSG00000272465.1
47	lnc-WRNIP1-35	chr6:2356966-2357275	NONHSAT106651
48	lnc-C6orf195-6	chr6:2570007-2570229	NONHSAT106697
49	lnc-WRNIP1-29	chr6:2541892-2542360	NONHSAT106694
50	lnc-WRNIP1-31	chr6:2497017-2497472	NONHSAT106686

No data

Variant related genes	Relation type
ENSG00000266252	TF binding region
GMDS-AS1	TF binding region
HMGN2P28	TF binding region
ENSG00000272465	TF binding region
ENSG00000266252	CpG island
GMDS-AS1	CpG island
HMGN2P28	CpG island
ENSG00000272465	CpG island
ENSG00000164385	chromatin interactions
ENSG00000124570	chromatin interactions
ENSG00000112699	chromatin interactions
ENSG00000054598	chromatin interactions
ENSG00000272465	chromatin interactions
ENSG00000250903	chromatin interactions
KCTD10	miRNA target sites
TMED10	miRNA target sites
SMAD4	miRNA target sites
SPG20	miRNA target sites
KIF5A	miRNA target sites
VAMP3	miRNA target sites
SMARCE1	miRNA target sites
ARL4A	miRNA target sites
PLAGL2	miRNA target sites
PDE4D	miRNA target sites
TAF4	miRNA target sites
LYRM7	miRNA target sites
ATXN7L3	miRNA target sites
BTBD3	miRNA target sites
PCBP2	miRNA target sites
NR5A2	miRNA target sites
TMEM194A	miRNA target sites
CDK2	miRNA target sites
LRRC2	miRNA target sites
CLEC4D	miRNA target sites
LUC7L2	miRNA target sites
UBR5	miRNA target sites

Extended variants
information (count: 12919 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:12919 , 50 per page) page: 1 2 3 4 5 6 7 ... 259

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9328087	chr6:2265344-2265345	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs184921017	chr6:2265355-2265356	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs139163717	chr6:2265362-2265363	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs116502071	chr6:2265401-2265402	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs541697935	chr6:2265485-2265486	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs561801461	chr6:2265503-2265504	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs572316292	chr6:2265527-2265528	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs540215576	chr6:2265553-2265554	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs560581739	chr6:2265564-2265565	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs78869643	chr6:2265578-2265579	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs115047836	chr6:2265600-2265601	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs367815198	chr6:2265658-2265659	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs563053371	chr6:2265742-2265743	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs149503488	chr6:2265746-2265747	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs188900856	chr6:2265747-2265748	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs115779143	chr6:2265763-2265764	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs371348046	chr6:2265783-2265784	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs534507573	chr6:2265854-2265855	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs547073957	chr6:2265911-2265912	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs28472643	chr6:2265930-2265931	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs560105976	chr6:2265942-2265943	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs114551845	chr6:2265953-2265954	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs377517636	chr6:2265999-2266000	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs532101231	chr6:2266009-2266010	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs370937810	chr6:2266049-2266050	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs555868584	chr6:2266177-2266178	Enhancers Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs35586093	chr6:2266214-2266215	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs181692535	chr6:2266276-2266277	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs376217504	chr6:2266311-2266312	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs535255996	chr6:2266320-2266321	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs1196389	chr6:2266347-2266348	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs572248474	chr6:2266353-2266354	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs375191302	chr6:2266368-2266369	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs56809343	chr6:2266378-2266379	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs144160358	chr6:2266391-2266392	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs577341120	chr6:2266409-2266410	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs546243736	chr6:2266437-2266438	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs562933056	chr6:2266492-2266493	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs75383160	chr6:2266497-2266498	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs531568755	chr6:2266520-2266521	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs368989946	chr6:2266541-2266542	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs562352253	chr6:2266583-2266584	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs560187296	chr6:2266631-2266632	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs148680032	chr6:2266645-2266646	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs35431273	chr6:2266721-2266722	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs369394131	chr6:2266730-2266731	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs368413441	chr6:2266763-2266764	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs548102322	chr6:2266768-2266769	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs570092056	chr6:2266794-2266795	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs57225509	chr6:2266824-2266825	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Prader-willi syndrome	20588305	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Developmental delay	19490664	CNVD
Cancer	21183584	CNVD
Multiple Epiphyseal Dysplasia	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Glaucoma	18694899	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	17603634	CNVD
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Lung cancer	18438408	CNVD
Bladder cancer	21909424	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
small cell lung cancer	20016488	CNVD
Autism	22495311	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Uveal melanoma	20484589	CNVD
Melanoma	18172304	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:2844 , 50 per page) page: 1 2 3 4 5 6 7 ... 57

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:2247000-2269400	Weak transcription	Right Ventricle	heart
2	chr6:2247000-2273800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:2247000-2275000	Weak transcription	Fetal Kidney	kidney
4	chr6:2247000-2275400	Weak transcription	NHLF	lung
5	chr6:2247000-2275600	Weak transcription	Fetal Heart	heart
6	chr6:2247200-2272600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:2247600-2274400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:2247800-2284200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:2248200-2275000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:2248400-2274400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:2250400-2267600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:2250400-2274800	Weak transcription	Brain Angular Gyrus	brain
13	chr6:2250800-2265400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:2251000-2273600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:2252400-2265800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:2255200-2272400	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:2255400-2272800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:2255600-2269600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:2255800-2288600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:2256000-2269400	Weak transcription	Fetal Lung	lung
21	chr6:2256000-2272400	Weak transcription	Placenta	Placenta
22	chr6:2256200-2272400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:2256200-2272600	Weak transcription	Brain Substantia Nigra	brain
24	chr6:2256200-2272800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:2258800-2265800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:2258800-2271000	Weak transcription	Colonic Mucosa	Colon
27	chr6:2259800-2276400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr6:2261600-2272000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:2261800-2272800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:2262200-2267000	Weak transcription	Stomach Mucosa	stomach
31	chr6:2262200-2282600	Weak transcription	Small Intestine	intestine
32	chr6:2263800-2265600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr6:2264000-2279000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:2264200-2265400	Strong transcription	Aorta	Aorta
35	chr6:2264200-2265400	Strong transcription	Dnd41	blood
36	chr6:2264200-2265600	Strong transcription	Primary B cells from peripheral blood	blood
37	chr6:2264200-2265600	Strong transcription	Esophagus	oesophagus
38	chr6:2264200-2265600	Strong transcription	Ovary	ovary
39	chr6:2264200-2265600	Strong transcription	Rectal Smooth Muscle	rectum
40	chr6:2264200-2265800	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:2264200-2265800	Strong transcription	Fetal Intestine Large	intestine
42	chr6:2264200-2265800	Strong transcription	Spleen	Spleen
43	chr6:2264200-2266000	Strong transcription	Primary T cells from cord blood	blood
44	chr6:2264200-2266000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr6:2264200-2266000	Strong transcription	Liver	Liver
46	chr6:2264200-2266200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:2264200-2266200	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:2264200-2266200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:2264200-2266200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:2264200-2266200	Strong transcription	Duodenum Mucosa	Duodenum

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