Variant report

Variant	nsv886168
Chromosome Location	chr6:75112715-75166715
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:75118978..75119780-chr6:75475200..75475940,2	MCF-7	breast:
2	chr6:75118557..75119496-chr6:75918100..75919176,3	MCF-7	breast:
3	chr6:75162934..75164714-chr6:75292705..75294296,2	MCF-7	breast:
4	chr6:75117931..75120867-chr6:75914408..75916114,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD109-8	chr6:75113511-75113565	ucscGeneNc_uc003phr_2

Variant related genes	Relation type
ENSG00000111799	chromatin interactions

Extended variants
information (count: 1442 )
Associated
traits (count: 94 )

Variant overlapped rSNPs/rCNVs (count:1442 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs139374036	chr6:75113222-75113223	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs141791549	chr6:75113227-75113228	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs278331	chr6:75113251-75113252	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs184150632	chr6:75113252-75113253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs376613081	chr6:75113289-75113290	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs546428981	chr6:75113328-75113329	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs118187347	chr6:75113369-75113370	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs150549618	chr6:75113375-75113376	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs529293514	chr6:75113378-75113379	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs377767017	chr6:75113386-75113387	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs547536233	chr6:75113448-75113449	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs139593727	chr6:75113453-75113454	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs149794640	chr6:75113472-75113473	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs557960378	chr6:75113498-75113499	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs370951341	chr6:75113532-75113533	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs9447198	chr6:75113607-75113608	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs9447199	chr6:75113627-75113628	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs555641342	chr6:75113640-75113641	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs144748607	chr6:75113664-75113665	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs529089583	chr6:75113679-75113680	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs186983519	chr6:75113685-75113686	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs140002425	chr6:75113698-75113699	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs76088177	chr6:75113707-75113708	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs544859467	chr6:75113732-75113733	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs145331811	chr6:75113794-75113795	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs147670558	chr6:75113795-75113796	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs566984320	chr6:75113799-75113800	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs542896697	chr6:75113807-75113808	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs530926847	chr6:75113830-75113831	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs117154188	chr6:75113833-75113834	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs529263319	chr6:75113912-75113913	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs549431554	chr6:75113931-75113932	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs547819376	chr6:75113946-75113947	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs567738436	chr6:75114002-75114003	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs142594170	chr6:75114027-75114028	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs533504788	chr6:75114063-75114064	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs116540173	chr6:75114085-75114086	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs569865148	chr6:75114101-75114102	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs142483253	chr6:75114110-75114111	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs540148285	chr6:75114141-75114142	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs549254782	chr6:75114145-75114146	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs9352110	chr6:75114188-75114189	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
43	rs567078615	chr6:75114252-75114253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs534300851	chr6:75114256-75114257	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs552967275	chr6:75114269-75114270	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs192740680	chr6:75114270-75114271	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs538709377	chr6:75114324-75114325	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs547203727	chr6:75114339-75114340	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs557095979	chr6:75114355-75114356	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs151298445	chr6:75114361-75114362	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:94)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ovarian cancer	17437010	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Chondromyxoid Fibroma	20696777	CNVD
Multiple myeloma	16616336	CNVD
Acute myeloid leukemia	16864856	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Myelodysplastic syndrome	18508791	CNVD

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75113200-75114400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:75114400-75119400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:75117600-75118200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:75118000-75118800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:75118400-75119600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:75118400-75121600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:75118400-75121800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:75118600-75119000	Enhancers	Adipose Nuclei	Adipose
9	chr6:75118600-75121800	Enhancers	Osteobl	bone
10	chr6:75118800-75119600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:75118800-75120800	Enhancers	HSMM	muscle
12	chr6:75119400-75121400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:75119600-75121000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:75121000-75121800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:75121600-75124400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:75124400-75125600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:75129800-75130600	Enhancers	Small Intestine	intestine
18	chr6:75129800-75131000	Enhancers	Fetal Intestine Large	intestine
19	chr6:75129800-75131200	Enhancers	Fetal Intestine Small	intestine
20	chr6:75130000-75130600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:75130000-75131000	Enhancers	Duodenum Mucosa	Duodenum
22	chr6:75130200-75130800	Enhancers	Stomach Mucosa	stomach
23	chr6:75139800-75140000	Enhancers	Rectal Smooth Muscle	rectum
24	chr6:75140000-75142800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:75141200-75145200	Enhancers	Colon Smooth Muscle	Colon
26	chr6:75141400-75142000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:75141400-75142200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:75141400-75142200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr6:75141600-75142000	Enhancers	NHDF-Ad	bronchial
30	chr6:75142800-75144200	Enhancers	Rectal Smooth Muscle	rectum
31	chr6:75143400-75144200	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr6:75144200-75144800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr6:75144200-75145000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr6:75144800-75145400	Enhancers	Rectal Smooth Muscle	rectum
35	chr6:75145000-75145200	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr6:75145400-75149000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr6:75148600-75149800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:75149000-75149600	Enhancers	Rectal Smooth Muscle	rectum
39	chr6:75149800-75155800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:75155800-75157200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:75156400-75157400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr6:75156600-75157000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:75156600-75157200	Active TSS	GM12878-XiMat	blood
44	chr6:75156800-75157200	Enhancers	HSMMtube	muscle
45	chr6:75161000-75162400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:75161600-75162000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr6:75162400-75163600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:75163600-75164200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:75163800-75164200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr6:75165000-75165600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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