Variant report

Variant	nsv887428
Chromosome Location	chr7:6449496-6463905
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:425)
CpG islands
(count:366)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:425 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr7:6456237-6456719	A549	lung:	n/a	n/a
2	BHLHE40	chr7:6456318-6456332	K562	blood:	n/a	n/a
3	CBX3	chr7:6461097-6461508	K562	blood:	n/a	n/a
4	CEBPB	chr7:6463073-6463086	K562	blood:	n/a	n/a
5	CEBPB	chr7:6463036-6463217	IMR90	lung:	n/a	n/a
6	CEBPB	chr7:6463086-6463123	A549	lung:	n/a	n/a
7	CHD2	chr7:6463864-6464039	Hela-S3	cervix:	n/a	n/a
8	CHD2	chr7:6456220-6456783	H1-hESC	embryonic stem cell:	n/a	n/a
9	CHD2	chr7:6453443-6453488	K562	blood:	n/a	n/a
10	CTCF	chr7:6463880-6464030	Hela-S3	cervix:	n/a	n/a
11	CTCF	chr7:6456320-6456470	NB4	blood:	n/a	n/a
12	CTCF	chr7:6463899-6464168	NHEK	skin:	n/a	chr7:6464157-6464165
13	CTCF	chr7:6463764-6464297	MCF-7	breast:	n/a	chr7:6464157-6464165
14	CTCF	chr7:6463880-6464130	K562	blood:	n/a	n/a
15	CTCF	chr7:6456231-6456425	K562	blood:	n/a	n/a
16	CTCF	chr7:6463876-6464181	H1-hESC	embryonic stem cell:	n/a	chr7:6464157-6464165
17	CTCF	chr7:6456250-6456426	H1-hESC	embryonic stem cell:	n/a	n/a
18	CTCF	chr7:6456360-6456510	A549	lung:	n/a	n/a
19	CTCF	chr7:6456254-6456427	K562	blood:	n/a	n/a
20	CTCF	chr7:6463873-6464182	K562	blood:	n/a	chr7:6464157-6464165
21	CTCF	chr7:6456420-6456570	HAc	cerebellar:	n/a	n/a
22	CTCF	chr7:6456400-6456550	HVMF	connective:	n/a	n/a
23	CTCF	chr7:6463900-6464050	HRPEpiC	eye:	n/a	n/a
24	CTCF	chr7:6456280-6456430	HEK293	kidney:	n/a	n/a
25	CTCF	chr7:6456128-6456466	K562	blood:	n/a	n/a
26	CTCF	chr7:6456240-6456390	HepG2	liver:	n/a	n/a
27	CTCF	chr7:6463900-6464050	HepG2	liver:	n/a	n/a
28	CTCF	chr7:6456320-6456470	HBMEC	blood vessel:	n/a	n/a
29	CTCF	chr7:6456200-6456350	Caco-2	colon:	n/a	n/a
30	CTCF	chr7:6456171-6456560	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chr7:6456180-6456330	HCT-116	colon:	n/a	n/a
32	CTCF	chr7:6463903-6464157	MCF-7	breast:	n/a	n/a
33	CTCF	chr7:6456142-6456461	H1-hESC	embryonic stem cell:	n/a	n/a
34	CTCF	chr7:6456222-6456441	K562	blood:	n/a	n/a
35	CTCF	chr7:6463900-6464050	SAEC	small airway:	n/a	n/a
36	CTCF	chr7:6456300-6456450	WERI-Rb-1	eye:	n/a	n/a
37	CTCF	chr7:6463902-6464107	K562	blood:	n/a	n/a
38	CTCF	chr7:6463636-6464593	A549	lung:	n/a	chr7:6464157-6464165
39	CTCF	chr7:6463879-6464165	K562	blood:	n/a	chr7:6464157-6464165
40	CTCF	chr7:6456292-6456447	HepG2	liver:	n/a	n/a
41	CTCF	chr7:6456260-6456410	SAEC	small airway:	n/a	n/a
42	CTCF	chr7:6463900-6464050	HMF	breast:	n/a	n/a
43	CTCF	chr7:6452080-6452230	HEK293	kidney:	n/a	n/a
44	CTCF	chr7:6463895-6464181	GM12878	blood:	n/a	chr7:6464157-6464165
45	CTCF	chr7:6456260-6456410	WERI-Rb-1	eye:	n/a	n/a
46	CTCF	chr7:6463890-6464193	MCF-7	breast:	n/a	chr7:6464157-6464165
47	CTCF	chr7:6456320-6456470	HCPEpiC	choroid plexus:	n/a	n/a
48	CTCF	chr7:6456260-6456410	HEEpiC	esophagus:	n/a	n/a
49	CTCF	chr7:6463821-6464127	A549	lung:	n/a	n/a
50	CTCF	chr7:6463841-6464123	A549	lung:	n/a	n/a

(count:366 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:6449981-6450031	HRPEpiC	eye:	n/a
2	chr7:6460966-6461016	HEEpiC	esophagus:	n/a
3	chr7:6461393-6461443	HUVEC	blood vessel:	n/a
4	chr7:6449615-6449665	ovcar-3	ovarian:	n/a
5	chr7:6461991-6462041	Hela-S3	cervix:	n/a
6	chr7:6460966-6461016	LNCaP	prostate:	n/a
7	chr7:6461991-6462041	HCT-116	colon:	n/a
8	chr7:6460966-6461016	HPAEpiC	pulmonary alveolar:	n/a
9	chr7:6449981-6450031	MCF-7	breast:	n/a
10	chr7:6461991-6462041	HCPEpiC	choroid plexus:	n/a
11	chr7:6449981-6450031	HEK293	kidney:	embryo
12	chr7:6460966-6461016	K562	blood:	n/a
13	chr7:6461991-6462041	HL-60	blood:	n/a
14	chr7:6449615-6449665	MCF10A-Er-Src	breast:	n/a
15	chr7:6449575-6449625	Caco-2	colon:	n/a
16	chr7:6460966-6461016	BJ	skin:	n/a
17	chr7:6461393-6461443	AoSMC	blood vessel:	n/a
18	chr7:6449615-6449665	GM12892	blood:	n/a
19	chr7:6449575-6449625	CMK	blood:	n/a
20	chr7:6449575-6449625	HCM	heart:	n/a
21	chr7:6449981-6450031	HPAEpiC	pulmonary alveolar:	n/a
22	chr7:6449615-6449665	AG09309	skin:	n/a
23	chr7:6449981-6450031	GM19239	blood:	n/a
24	chr7:6461393-6461443	HPAEpiC	pulmonary alveolar:	n/a
25	chr7:6460966-6461016	PFSK-1	brain:	n/a
26	chr7:6461393-6461443	K562	blood:	n/a
27	chr7:6449575-6449625	LNCaP	prostate:	n/a
28	chr7:6460966-6461016	HEK293	kidney:	embryo
29	chr7:6449615-6449665	Jurkat	blood:	n/a
30	chr7:6449615-6449665	GM19239	blood:	n/a
31	chr7:6449981-6450031	HMEC	breast:	n/a
32	chr7:6461991-6462041	T-47D	breast:	n/a
33	chr7:6449981-6450031	NH-A	brain:	n/a
34	chr7:6461393-6461443	NH-A	brain:	n/a
35	chr7:6460966-6461016	GM19239	blood:	n/a
36	chr7:6461393-6461443	HAEpiC	amniotic membrane:	n/a
37	chr7:6461393-6461443	ovcar-3	ovarian:	n/a
38	chr7:6460966-6461016	HRE	kidney:	n/a
39	chr7:6449981-6450031	Hela-S3	cervix:	n/a
40	chr7:6449575-6449625	IMR90	lung:	fetal
41	chr7:6461393-6461443	NHBE	bronchial:	n/a
42	chr7:6460966-6461016	HL-60	blood:	n/a
43	chr7:6461991-6462041	AG09309	skin:	n/a
44	chr7:6461991-6462041	ovcar-3	ovarian:	n/a
45	chr7:6449981-6450031	HL-60	blood:	n/a
46	chr7:6461991-6462041	HEK293	kidney:	embryo
47	chr7:6461991-6462041	PFSK-1	brain:	n/a
48	chr7:6461991-6462041	Jurkat	blood:	n/a
49	chr7:6449981-6450031	H1-hESC	embryonic stem cell:	embryo
50	chr7:6460966-6461016	T-47D	breast:	n/a

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:6442339..6447267-chr7:6447321..6451395,5	K562	blood:
2	chr7:6447746..6451177-chr7:6455509..6458187,3	K562	blood:
3	chr7:6412676..6416102-chr7:6462596..6465621,3	MCF-7	breast:
4	chr7:6441361..6444095-chr7:6447321..6449939,3	K562	blood:
5	chr7:6439883..6442472-chr7:6446934..6449638,2	MCF-7	breast:
6	chr7:6459143..6461711-chr7:6462987..6466871,3	K562	blood:
7	chr7:6459412..6462059-chr7:6463875..6466225,2	K562	blood:
8	chr7:6439401..6441053-chr7:6448696..6450255,2	K562	blood:
9	chr7:6449174..6451556-chr7:6462432..6464944,2	MCF-7	breast:
10	chr7:6446943..6448782-chr7:6451434..6453838,3	K562	blood:
11	chr7:6444358..6447267-chr7:6449792..6451395,2	K562	blood:
12	chr7:6439968..6442839-chr7:6456172..6458248,2	MCF-7	breast:
13	chr7:6454958..6457155-chr7:6459947..6462538,2	MCF-7	breast:
14	chr7:6450554..6452966-chr7:6454355..6457086,3	K562	blood:
15	chr7:6459412..6462059-chr7:6463875..6466225,2	K562	blood:
16	chr7:6447073..6448617-chr7:6452912..6454425,2	MCF-7	breast:
17	chr7:6450208..6453839-chr7:6454159..6457397,3	MCF-7	breast:
18	chr7:6459143..6461711-chr7:6462987..6466871,3	K562	blood:
19	chr7:6454958..6457155-chr7:6459947..6462538,2	MCF-7	breast:

No data

Variant related genes	Relation type
DAGLB	TF binding region
DAGLB	CpG island
ENSG00000136238	chromatin interactions
ENSG00000164535	chromatin interactions

Extended variants
information (count: 926 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:926 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2303361	chr7:6449496-6449497	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs534855020	chr7:6449498-6449499	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs371750309	chr7:6449502-6449503	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs376036204	chr7:6449503-6449504	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs116243689	chr7:6449512-6449513	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs368954918	chr7:6449517-6449518	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs143795237	chr7:6449519-6449520	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs145993691	chr7:6449521-6449522	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs140707721	chr7:6449527-6449528	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs372411793	chr7:6449540-6449541	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs150406824	chr7:6449543-6449544	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs201087247	chr7:6449550-6449551	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs138713047	chr7:6449551-6449552	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs138127497	chr7:6449560-6449561	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs111534582	chr7:6449566-6449567	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs201602908	chr7:6449574-6449575	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs149164893	chr7:6449577-6449578	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs143267120	chr7:6449585-6449586	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs369839410	chr7:6449588-6449589	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs139129432	chr7:6449589-6449590	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs200184220	chr7:6449590-6449591	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs141846216	chr7:6449591-6449592	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs373718109	chr7:6449596-6449597	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs34807437	chr7:6449600-6449601	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs199735881	chr7:6449608-6449609	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs201856301	chr7:6449616-6449617	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs376704956	chr7:6449621-6449622	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs371012241	chr7:6449635-6449636	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs138947170	chr7:6449640-6449641	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs141322626	chr7:6449652-6449653	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs117763067	chr7:6449671-6449672	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs547236199	chr7:6449676-6449677	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs549260966	chr7:6449687-6449688	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs188076040	chr7:6449696-6449697	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs372922766	chr7:6449697-6449698	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs377478824	chr7:6449698-6449699	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs370327730	chr7:6449708-6449709	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs146258893	chr7:6449716-6449717	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs200924183	chr7:6449717-6449718	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs368654531	chr7:6449719-6449720	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs538724319	chr7:6449723-6449724	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs557993902	chr7:6449732-6449733	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs371193609	chr7:6449749-6449750	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs375425034	chr7:6449750-6449751	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs368426784	chr7:6449753-6449754	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs372289619	chr7:6449755-6449756	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs201911372	chr7:6449761-6449762	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs543787333	chr7:6449762-6449763	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs148484155	chr7:6449766-6449767	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs139753251	chr7:6449794-6449795	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Lynch syndrome	22585707	CNVD
Follicular lymphoma	20505157	CNVD
Breast cancer	16397240	CNVD
Raine Syndrome	17924334	CNVD
Diffuse large b-cell lymphoma	21266526	CNVD
Melanoma	18172304	CNVD
Sudden cardiac death	19188705	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Glioma	18556773	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Ovarian cancer	22174824	CNVD
Urothelial carcinoma	18382360	CNVD
Medulloblastoma	21979893	CNVD
Lynch syndrome	18415027	CNVD
Biliary cancer	19435499	CNVD
Cancer	16751803	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	17387387	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	18923191	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Leukemia	23979775	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Bladder cancer	21909424	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	21045282	CNVD
Disorders of sex development	21048976	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Acute myeloid leukemia	21251322	CNVD
Glioblastoma multiforme	21525872	CNVD
Ependymoma	20639864	CNVD
Autism	20685689	CNVD
Amyotrophic lateral sclerosis	20685689	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:622 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6426000-6456400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:6426000-6475600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:6426400-6457400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:6437400-6457400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:6437400-6457400	Strong transcription	Dnd41	blood
6	chr7:6437600-6470400	Strong transcription	Fetal Brain Female	brain
7	chr7:6437800-6450200	Strong transcription	Thymus	Thymus
8	chr7:6437800-6456400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:6437800-6457200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr7:6437800-6457400	Strong transcription	Primary B cells from peripheral blood	blood
11	chr7:6438000-6457400	Strong transcription	Rectal Mucosa Donor 29	rectum
12	chr7:6438000-6458000	Strong transcription	Osteobl	bone
13	chr7:6438000-6462400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:6438200-6450600	Strong transcription	Colonic Mucosa	Colon
15	chr7:6438600-6457200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr7:6438600-6457400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr7:6438600-6475600	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:6438800-6457400	Strong transcription	Primary T cells from cord blood	blood
19	chr7:6438800-6457600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:6438800-6462800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr7:6439000-6456400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:6439200-6456000	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:6439200-6456800	Strong transcription	NHDF-Ad	bronchial
24	chr7:6439200-6457200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
25	chr7:6439200-6457400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:6439400-6454200	Strong transcription	Spleen	Spleen
27	chr7:6439400-6457200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:6439400-6457400	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr7:6439400-6457400	Strong transcription	Fetal Muscle Trunk	muscle
30	chr7:6439400-6458000	Strong transcription	Fetal Muscle Leg	muscle
31	chr7:6439600-6456000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:6439600-6456600	Strong transcription	HUVEC	blood vessel
33	chr7:6439600-6456800	Strong transcription	Aorta	Aorta
34	chr7:6439600-6457000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr7:6439600-6457000	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:6439600-6457200	Strong transcription	Fetal Lung	lung
37	chr7:6439600-6457400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr7:6439600-6472400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr7:6439800-6454800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr7:6439800-6457400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:6439800-6457400	Strong transcription	Liver	Liver
42	chr7:6439800-6457400	Strong transcription	Duodenum Mucosa	Duodenum
43	chr7:6439800-6474600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr7:6439800-6474600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr7:6439800-6477400	Strong transcription	Fetal Intestine Small	intestine
46	chr7:6440000-6450200	Strong transcription	Pancreas	Pancrea
47	chr7:6440200-6449600	Strong transcription	Placenta	Placenta
48	chr7:6440200-6450400	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr7:6440200-6456200	Strong transcription	A549	lung
50	chr7:6440200-6456400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links