Variant report

Variant	nsv890951
Chromosome Location	chr8:62889169-62989464
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:62938150..62940278-chr8:62941501..62943278,2	K562	blood:
2	chr8:62943835..62945926-chr8:62946749..62948814,2	K562	blood:
3	chr8:62884871..62886740-chr8:62945521..62948449,2	K562	blood:
4	chr8:62938150..62940278-chr8:62941501..62943278,2	K562	blood:
5	chr8:62967118..62970031-chr8:62972177..62973687,2	K562	blood:
6	chr2:130119670..130120438-chr8:62898305..62898866,2	MCF-7	breast:
7	chr8:62967118..62970031-chr8:62972177..62973687,2	K562	blood:
8	chr8:62943835..62945926-chr8:62946749..62948814,2	K562	blood:
9	chr8:62917743..62920079-chr8:62921641..62924379,2	K562	blood:
10	chr8:62938324..62940496-chr8:62944445..62947217,2	K562	blood:
11	chr8:62917743..62920079-chr8:62921641..62924379,2	K562	blood:
12	chr8:62938324..62940496-chr8:62944445..62947217,2	K562	blood:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NKAIN3-12	chr8:62927772-62927889	l_3612_chr8:62900432-62937354_testes
2	lnc-NKAIN3-12	chr8:62936883-62937354	l_3612_chr8:62900432-62937354_testes
3	lnc-NKAIN3-13	chr8:62899508-62899809	NONHSAT126903
4	lnc-NKAIN3-12	chr8:62964921-62965131	l_3612_chr8:62900432-62937354_testes
5	lnc-NKAIN3-12	chr8:62944470-62944723	l_3612_chr8:62900432-62937354_testes
6	lnc-NKAIN3-12	chr8:62960399-62960658	l_3612_chr8:62900432-62937354_testes
7	lnc-NKAIN3-12	chr8:62902932-62903090	l_3612_chr8:62900432-62937354_testes
8	lnc-NKAIN3-12	chr8:62909986-62910109	l_3612_chr8:62900432-62937354_testes
9	lnc-NKAIN3-12	chr8:62916436-62916562	l_3612_chr8:62900432-62937354_testes
10	lnc-NKAIN3-12	chr8:62900433-62900645	l_3612_chr8:62900432-62937354_testes
11	lnc-NKAIN3-13	chr8:62907119-62907182	NONHSAT126903

No data

Extended variants
information (count: 2192 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:2192 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs568240259	chr8:62892013-62892014	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs535293037	chr8:62892018-62892019	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs147131673	chr8:62892057-62892058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs182724842	chr8:62892101-62892102	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs1367925	chr8:62892117-62892118	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs539569837	chr8:62892122-62892123	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs62506602	chr8:62892153-62892154	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs376653226	chr8:62892246-62892247	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs12545751	chr8:62892296-62892297	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs71525468	chr8:62892308-62892309	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs72662689	chr8:62892343-62892344	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs534494959	chr8:62892405-62892406	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs882769	chr8:62892445-62892446	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs574139066	chr8:62892452-62892453	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs377187822	chr8:62892495-62892496	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs562110626	chr8:62892496-62892497	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs577691935	chr8:62892511-62892512	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs185903377	chr8:62892549-62892550	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs534674516	chr8:62892576-62892577	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs3077199	chr8:62892583-62892584	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs560105037	chr8:62892634-62892635	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs1318018	chr8:62892641-62892642	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs567082089	chr8:62892643-62892644	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs540473341	chr8:62892649-62892650	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs561842550	chr8:62892707-62892708	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs72662690	chr8:62892756-62892757	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs190144574	chr8:62892767-62892768	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs140425525	chr8:62892785-62892786	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs533050184	chr8:62892793-62892794	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs550809886	chr8:62892846-62892847	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs551550883	chr8:62892850-62892851	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs182414398	chr8:62892901-62892902	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs187462894	chr8:62892948-62892949	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs537590126	chr8:62892980-62892981	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs114435569	chr8:62892983-62892984	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs567884796	chr8:62892991-62892992	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs538556101	chr8:62893045-62893046	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs76325076	chr8:62893048-62893049	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs577856720	chr8:62893092-62893093	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs541478274	chr8:62893152-62893153	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs555836183	chr8:62893162-62893163	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs115785990	chr8:62893168-62893169	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs368516671	chr8:62893189-62893190	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs553851356	chr8:62893209-62893210	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs144287893	chr8:62893212-62893213	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs79731464	chr8:62893240-62893241	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs192224379	chr8:62893241-62893242	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs115553748	chr8:62893259-62893260	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs529160704	chr8:62893293-62893294	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs544535887	chr8:62893308-62893309	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Salivary gland tumor	18059337	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Sezary syndrome	18413736	CNVD
Colorectal cancer	21645411	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:209 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62892000-62893000	Enhancers	A549	lung
2	chr8:62892000-62893200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:62892000-62893400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:62892000-62893400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:62892200-62893200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:62892200-62893400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:62892400-62893400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:62892600-62893000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:62892600-62893200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:62892600-62893200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:62892600-62893200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:62892600-62893400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:62892600-62893800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:62892800-62893400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr8:62892800-62893600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:62894600-62895200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr8:62918800-62919200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:62918800-62919200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:62919000-62919200	Enhancers	Gastric	stomach
20	chr8:62919000-62922800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr8:62919200-62922000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:62919400-62922000	Weak transcription	Gastric	stomach
23	chr8:62919600-62921200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr8:62919800-62920200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr8:62920200-62923000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:62921200-62923000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr8:62921800-62922400	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr8:62922000-62922200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:62922000-62922200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr8:62922000-62922200	Enhancers	Gastric	stomach
31	chr8:62922200-62922600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:62922200-62923000	Weak transcription	Gastric	stomach
33	chr8:62922600-62923800	Enhancers	Fetal Brain Female	brain
34	chr8:62922600-62924800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:62922800-62923600	Enhancers	Stomach Mucosa	stomach
36	chr8:62922800-62924200	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr8:62923000-62923200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr8:62923000-62923400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:62923000-62923400	Enhancers	Muscle Satellite Cultured Cells	--
40	chr8:62923000-62923400	Enhancers	Gastric	stomach
41	chr8:62923000-62924000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr8:62923000-62924400	Enhancers	HSMM	muscle
43	chr8:62923000-62924600	Enhancers	NH-A	brain
44	chr8:62923000-62925000	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr8:62923200-62923600	Enhancers	HSMMtube	muscle
46	chr8:62923200-62923800	Enhancers	A549	lung
47	chr8:62923200-62924400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr8:62923200-62924600	Enhancers	Hela-S3	cervix
49	chr8:62923400-62923800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:62923400-62923800	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links