Variant report

Variant	nsv890953
Chromosome Location	chr8:62899559-62989464
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:62938150..62940278-chr8:62941501..62943278,2	K562	blood:
2	chr8:62967118..62970031-chr8:62972177..62973687,2	K562	blood:
3	chr8:62884871..62886740-chr8:62945521..62948449,2	K562	blood:
4	chr8:62967118..62970031-chr8:62972177..62973687,2	K562	blood:
5	chr8:62938324..62940496-chr8:62944445..62947217,2	K562	blood:
6	chr8:62943835..62945926-chr8:62946749..62948814,2	K562	blood:
7	chr8:62917743..62920079-chr8:62921641..62924379,2	K562	blood:
8	chr8:62938150..62940278-chr8:62941501..62943278,2	K562	blood:
9	chr8:62943835..62945926-chr8:62946749..62948814,2	K562	blood:
10	chr8:62938324..62940496-chr8:62944445..62947217,2	K562	blood:
11	chr8:62917743..62920079-chr8:62921641..62924379,2	K562	blood:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NKAIN3-12	chr8:62900433-62900645	l_3612_chr8:62900432-62937354_testes
2	lnc-NKAIN3-12	chr8:62936883-62937354	l_3612_chr8:62900432-62937354_testes
3	lnc-NKAIN3-12	chr8:62902932-62903090	l_3612_chr8:62900432-62937354_testes
4	lnc-NKAIN3-12	chr8:62960399-62960658	l_3612_chr8:62900432-62937354_testes
5	lnc-NKAIN3-12	chr8:62909986-62910109	l_3612_chr8:62900432-62937354_testes
6	lnc-NKAIN3-12	chr8:62944470-62944723	l_3612_chr8:62900432-62937354_testes
7	lnc-NKAIN3-13	chr8:62899508-62899809	NONHSAT126903
8	lnc-NKAIN3-12	chr8:62916436-62916562	l_3612_chr8:62900432-62937354_testes
9	lnc-NKAIN3-12	chr8:62964921-62965131	l_3612_chr8:62900432-62937354_testes
10	lnc-NKAIN3-13	chr8:62907119-62907182	NONHSAT126903
11	lnc-NKAIN3-12	chr8:62927772-62927889	l_3612_chr8:62900432-62937354_testes

No data

Extended variants
information (count: 2093 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:2093 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs344336	chr8:62899559-62899560	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs185073485	chr8:62899598-62899599	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs76392209	chr8:62899656-62899657	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs533232742	chr8:62899693-62899694	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs76140726	chr8:62899697-62899698	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs567639711	chr8:62899755-62899756	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs146799465	chr8:62899766-62899767	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs182471801	chr8:62900448-62900449	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs569629449	chr8:62900468-62900469	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs186637469	chr8:62900478-62900479	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs10098458	chr8:62900520-62900521	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs547546586	chr8:62900551-62900552	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs151066399	chr8:62900567-62900568	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs377515481	chr8:62900641-62900642	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs561702206	chr8:62902948-62902949	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs188439672	chr8:62902989-62902990	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs529117890	chr8:62903036-62903037	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs187344916	chr8:62907131-62907132	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs561786129	chr8:62907146-62907147	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs574387564	chr8:62907147-62907148	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs200105097	chr8:62907151-62907152	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs374546977	chr8:62907156-62907157	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs542108942	chr8:62907166-62907167	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs563297554	chr8:62907167-62907168	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs558752880	chr8:62907179-62907180	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs148785531	chr8:62907182-62907183	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs546689515	chr8:62910013-62910014	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs532602795	chr8:62910026-62910027	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs200828737	chr8:62910097-62910098	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs147113101	chr8:62916445-62916446	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs1431924	chr8:62916466-62916467	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs76140531	chr8:62916500-62916501	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs76389120	chr8:62916502-62916503	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs564741201	chr8:62916508-62916509	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs371173644	chr8:62916509-62916510	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs59153354	chr8:62916522-62916523	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs78328276	chr8:62916524-62916525	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs138512444	chr8:62916539-62916540	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs547487482	chr8:62916549-62916550	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs188604737	chr8:62916562-62916563	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs575365309	chr8:62918825-62918826	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs145838095	chr8:62918827-62918828	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs564077353	chr8:62918849-62918850	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs191551739	chr8:62918855-62918856	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs376865669	chr8:62918964-62918965	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs572773589	chr8:62918967-62918968	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs540252333	chr8:62919017-62919018	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs183736904	chr8:62919024-62919025	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs148981668	chr8:62919049-62919050	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs147077955	chr8:62919097-62919098	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Salivary gland tumor	18059337	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Sezary syndrome	18413736	CNVD
Colorectal cancer	21645411	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:193 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62918800-62919200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:62918800-62919200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:62919000-62919200	Enhancers	Gastric	stomach
4	chr8:62919000-62922800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:62919200-62922000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:62919400-62922000	Weak transcription	Gastric	stomach
7	chr8:62919600-62921200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:62919800-62920200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr8:62920200-62923000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:62921200-62923000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:62921800-62922400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:62922000-62922200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:62922000-62922200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:62922000-62922200	Enhancers	Gastric	stomach
15	chr8:62922200-62922600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:62922200-62923000	Weak transcription	Gastric	stomach
17	chr8:62922600-62923800	Enhancers	Fetal Brain Female	brain
18	chr8:62922600-62924800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:62922800-62923600	Enhancers	Stomach Mucosa	stomach
20	chr8:62922800-62924200	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr8:62923000-62923200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:62923000-62923400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:62923000-62923400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr8:62923000-62923400	Enhancers	Gastric	stomach
25	chr8:62923000-62924000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:62923000-62924400	Enhancers	HSMM	muscle
27	chr8:62923000-62924600	Enhancers	NH-A	brain
28	chr8:62923000-62925000	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr8:62923200-62923600	Enhancers	HSMMtube	muscle
30	chr8:62923200-62923800	Enhancers	A549	lung
31	chr8:62923200-62924400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr8:62923200-62924600	Enhancers	Hela-S3	cervix
33	chr8:62923400-62923800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:62923400-62923800	Enhancers	Brain Germinal Matrix	brain
35	chr8:62923400-62924000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:62923400-62924000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr8:62923400-62924000	Enhancers	HMEC	breast
38	chr8:62923400-62928000	Weak transcription	Gastric	stomach
39	chr8:62923800-62924000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:62923800-62924000	Enhancers	Stomach Smooth Muscle	stomach
41	chr8:62923800-62924200	Flanking Active TSS	Fetal Brain Female	brain
42	chr8:62923800-62924200	Flanking Active TSS	A549	lung
43	chr8:62923800-62925000	Enhancers	Fetal Brain Male	brain
44	chr8:62923800-62926200	Weak transcription	Brain Germinal Matrix	brain
45	chr8:62924000-62924400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr8:62924000-62924600	Enhancers	Muscle Satellite Cultured Cells	--
47	chr8:62924000-62926200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr8:62924200-62924400	Enhancers	Fetal Brain Female	brain
49	chr8:62924200-62924600	Enhancers	A549	lung
50	chr8:62924400-62927800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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