Variant report

Variant	nsv892010
Chromosome Location	chr9:841152-1069663
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3212)
CpG islands
(count:4642)
Chromatin interactive
region (count:139)
LncRNA
region (count:29)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3212 , 50 per page) page: 1 2 3 4 5 6 7 ... 65

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:1009225-1009309	K562	blood:	n/a	n/a
2	ATF1	chr9:1013083-1013384	K562	blood:	n/a	n/a
3	ATF2	chr9:893752-894467	GM12878	blood:	n/a	n/a
4	ATF2	chr9:880676-881163	GM12878	blood:	n/a	n/a
5	ATF2	chr9:859288-859680	GM12878	blood:	n/a	n/a
6	ATF2	chr9:880645-881171	GM12878	blood:	n/a	n/a
7	ATF2	chr9:859161-859692	GM12878	blood:	n/a	n/a
8	ATF2	chr9:893794-894511	GM12878	blood:	n/a	n/a
9	ATF3	chr9:1018219-1018540	HepG2	liver:	n/a	n/a
10	ATF3	chr9:1018242-1018408	K562	blood:	n/a	n/a
11	BACH1	chr9:919938-919953	K562	blood:	n/a	n/a
12	BACH1	chr9:971010-971040	H1-hESC	embryonic stem cell:	n/a	n/a
13	BACH1	chr9:971586-971900	H1-hESC	embryonic stem cell:	n/a	n/a
14	BACH1	chr9:1005054-1005459	H1-hESC	embryonic stem cell:	n/a	n/a
15	BACH1	chr9:908830-909208	H1-hESC	embryonic stem cell:	n/a	n/a
16	BACH1	chr9:1051968-1052204	H1-hESC	embryonic stem cell:	n/a	n/a
17	BACH1	chr9:841437-841715	H1-hESC	embryonic stem cell:	n/a	n/a
18	BACH1	chr9:969420-970114	H1-hESC	embryonic stem cell:	n/a	n/a
19	BACH1	chr9:972119-972583	H1-hESC	embryonic stem cell:	n/a	n/a
20	BACH1	chr9:976333-976475	H1-hESC	embryonic stem cell:	n/a	n/a
21	BATF	chr9:893858-894326	GM12878	blood:	n/a	n/a
22	BATF	chr9:847504-847840	GM12878	blood:	n/a	n/a
23	BATF	chr9:998485-999029	GM12878	blood:	n/a	n/a
24	BATF	chr9:903869-904086	GM12878	blood:	n/a	n/a
25	BATF	chr9:847470-847844	GM12878	blood:	n/a	n/a
26	BATF	chr9:893792-894397	GM12878	blood:	n/a	n/a
27	BATF	chr9:998447-999060	GM12878	blood:	n/a	n/a
28	BCL11A	chr9:859277-859643	GM12878	blood:	n/a	n/a
29	BCL11A	chr9:893909-894335	GM12878	blood:	n/a	n/a
30	BCL11A	chr9:899799-900118	GM12878	blood:	n/a	n/a
31	BCL11A	chr9:998476-999059	GM12878	blood:	n/a	n/a
32	BCL11A	chr9:899392-899596	H1-hESC	embryonic stem cell:	n/a	n/a
33	BCL11A	chr9:880682-881185	GM12878	blood:	n/a	n/a
34	BCL11A	chr9:899421-899798	GM12878	blood:	n/a	n/a
35	BCL11A	chr9:880773-881159	GM12878	blood:	n/a	n/a
36	BCL11A	chr9:903913-904168	GM12878	blood:	n/a	n/a
37	BCL11A	chr9:859287-859598	GM12878	blood:	n/a	n/a
38	BCL11A	chr9:998478-999038	GM12878	blood:	n/a	n/a
39	BCL11A	chr9:893880-894376	GM12878	blood:	n/a	n/a
40	BCL3	chr9:893884-894319	GM12878	blood:	n/a	n/a
41	BCL3	chr9:893869-894422	GM12878	blood:	n/a	n/a
42	BCLAF1	chr9:893713-894423	GM12878	blood:	n/a	n/a
43	BCLAF1	chr9:893770-894413	GM12878	blood:	n/a	n/a
44	BHLHE40	chr9:1018181-1018542	GM12878	blood:	n/a	chr9:1018361-1018370 chr9:1018359-1018372 chr9:1018362-1018371 chr9:1018361-1018370 chr9:1018360-1018369 chr9:1018355-1018376
45	BHLHE40	chr9:998476-999116	HepG2	liver:	n/a	n/a
46	BHLHE40	chr9:880679-881199	GM12878	blood:	n/a	n/a
47	BHLHE40	chr9:859004-859714	GM12878	blood:	n/a	n/a
48	BHLHE40	chr9:875266-875944	GM12878	blood:	n/a	n/a
49	BHLHE40	chr9:899445-900212	GM12878	blood:	n/a	n/a
50	BHLHE40	chr9:1009153-1009539	GM12878	blood:	n/a	chr9:1009235-1009251

(count:4642 , 50 per page) page: 1 2 3 4 5 6 7 ... 93

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:1045628-1045678	ECC-1	luminal epithelium:	n/a
2	chr9:969473-969523	ProgFib	skin:	n/a
3	chr9:841636-841686	ProgFib	skin:	n/a
4	chr9:974820-974870	GM12891	blood:	n/a
5	chr9:970605-970655	GM19239	blood:	n/a
6	chr9:970654-970704	BE2_C	brain:	n/a
7	chr9:1045628-1045678	ECC-1	luminal epithelium:	n/a
8	chr9:969473-969523	ProgFib	skin:	n/a
9	chr9:841636-841686	ProgFib	skin:	n/a
10	chr9:974820-974870	GM12891	blood:	n/a
11	chr9:970605-970655	GM19239	blood:	n/a
12	chr9:970654-970704	BE2_C	brain:	n/a
13	chr9:974533-974583	MCF10A-Er-Src	breast:	n/a
14	chr9:1045628-1045678	HRPEpiC	eye:	n/a
15	chr9:975997-976047	HAEpiC	amniotic membrane:	n/a
16	chr9:970654-970704	HCPEpiC	choroid plexus:	n/a
17	chr9:969473-969523	SAEC	small airway:	n/a
18	chr9:857563-857613	GM06990	blood:	n/a
19	chr9:995579-995629	PANC-1	pancreas:	n/a
20	chr9:976645-976695	HRPEpiC	eye:	n/a
21	chr9:990618-990668	GM19239	blood:	n/a
22	chr9:1054346-1054396	U87	brain:	n/a
23	chr9:971757-971807	AG09309	skin:	n/a
24	chr9:841850-841900	SAEC	small airway:	n/a
25	chr9:990692-990742	U87	brain:	n/a
26	chr9:971046-971096	NHDF-neo	bronchial:	n/a
27	chr9:1051505-1051555	A549	lung:	n/a
28	chr9:1042202-1042252	BE2_C	brain:	n/a
29	chr9:841632-841682	SAEC	small airway:	n/a
30	chr9:841340-841390	BJ	skin:	n/a
31	chr9:970605-970655	SAEC	small airway:	n/a
32	chr9:975059-975109	HAEpiC	amniotic membrane:	n/a
33	chr9:969530-969580	AG04450	lung:	fetal
34	chr9:841632-841682	MCF10A-Er-Src	breast:	n/a
35	chr9:841850-841900	HCPEpiC	choroid plexus:	n/a
36	chr9:1045628-1045678	HIPEpiC	eye:	n/a
37	chr9:973184-973234	HCPEpiC	choroid plexus:	n/a
38	chr9:991047-991097	HUVEC	blood vessel:	n/a
39	chr9:972622-972672	HRE	kidney:	n/a
40	chr9:1052239-1052289	HRE	kidney:	n/a
41	chr9:1045698-1045748	HNPCEpiC	eye:	n/a
42	chr9:970605-970655	PANC-1	pancreas:	n/a
43	chr9:973184-973234	CMK	blood:	n/a
44	chr9:841436-841486	HIPEpiC	eye:	n/a
45	chr9:995579-995629	MCF-7	breast:	n/a
46	chr9:976634-976684	A549	lung:	n/a
47	chr9:1049244-1049294	GM12878	blood:	n/a
48	chr9:1052046-1052096	NH-A	brain:	n/a
49	chr9:976638-976688	H1-hESC	embryonic stem cell:	embryo
50	chr9:1042970-1043020	MCF10A-Er-Src	breast:	n/a

(count:139 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr9:967263..969449-chr9:973261..974895,2	MCF-7	breast:
2	chr9:893903..894431-chr9:1004790..1005383,2	K562	blood:
3	chr9:979898..983032-chr9:983503..985277,3	MCF-7	breast:
4	chr9:889496..890427-chr9:998557..999062,2	MCF-7	breast:
5	chr9:937368..939632-chr9:940406..941967,2	MCF-7	breast:
6	chr9:892287..894400-chr9:997529..999081,2	MCF-7	breast:
7	chr9:887794..889918-chr9:1005357..1008295,2	MCF-7	breast:
8	chr9:846543..848941-chr9:858349..860587,2	K562	blood:
9	chr9:900039..901541-chr9:989164..991359,2	MCF-7	breast:
10	chr9:893804..894399-chr9:1008894..1009774,3	K562	blood:
11	chr9:890713..892471-chr9:1006171..1008763,2	MCF-7	breast:
12	chr9:947744..949483-chr9:965915..968744,2	MCF-7	breast:
13	chr9:613814..614512-chr9:1017801..1018342,2	MCF-7	breast:
14	chr9:959751..962676-chr9:970259..973174,2	K562	blood:
15	chr9:1036625..1037531-chr9:1049940..1050989,10	MCF-7	breast:
16	chr9:998424..999235-chr9:1008893..1009451,2	MCF-7	breast:
17	chr9:982598..984781-chr9:987934..990176,2	MCF-7	breast:
18	chr9:910762..911411-chr9:998511..999239,3	MCF-7	breast:
19	chr9:952441..954452-chr9:976112..977840,2	K562	blood:
20	chr9:1007423..1009287-chr9:1045081..1047981,2	MCF-7	breast:
21	chr9:953799..955412-chr9:960065..962028,2	MCF-7	breast:
22	chr9:1027853..1029813-chr9:1036990..1039141,2	MCF-7	breast:
23	chr9:893523..894096-chr9:1008794..1009361,2	MCF-7	breast:
24	chr9:994727..996463-chr9:998360..1001251,2	K562	blood:
25	chr9:1058546..1060876-chr9:1062329..1064196,2	MCF-7	breast:
26	chr9:958309..961593-chr9:963098..965708,4	MCF-7	breast:
27	chr9:1050736..1051474-chr9:1211377..1212172,7	MCF-7	breast:
28	chr9:891599..892777-chr9:998523..999622,4	MCF-7	breast:
29	chr9:970488..973347-chr9:974585..976403,2	K562	blood:
30	chr9:953799..955412-chr9:960065..962028,2	MCF-7	breast:
31	chr9:385756..386457-chr9:1008777..1009377,2	MCF-7	breast:
32	chr9:978343..980542-chr9:980897..983519,2	K562	blood:
33	chr9:1036670..1037506-chr9:1050009..1050746,3	MCF-7	breast:
34	chr9:892413..895344-chr9:995955..997519,2	MCF-7	breast:
35	chr9:1017910..1018696-chr9:1429132..1429802,2	MCF-7	breast:
36	chr9:893937..894571-chr9:1000555..1001318,2	MCF-7	breast:
37	chr6:89674376..89674876-chr9:1017838..1018522,2	MCF-7	breast:
38	chr9:1052914..1055179-chr9:1057328..1059620,2	MCF-7	breast:
39	chr9:858181..863479-chr9:867333..871768,4	MCF-7	breast:
40	chr9:960997..962745-chr9:963158..965869,2	MCF-7	breast:
41	chr9:967263..969449-chr9:973261..974895,2	MCF-7	breast:
42	chr9:950930..953777-chr9:967112..968787,2	MCF-7	breast:
43	chr9:923145..924947-chr9:928055..930388,2	MCF-7	breast:
44	chr9:891599..892777-chr9:998523..999622,4	MCF-7	breast:
45	chr9:1058546..1060876-chr9:1062329..1064196,2	MCF-7	breast:
46	chr9:979709..982475-chr9:990921..992536,2	MCF-7	breast:
47	chr9:962191..965396-chr9:970150..972525,3	MCF-7	breast:
48	chr9:889496..890427-chr9:998557..999062,2	MCF-7	breast:
49	chr9:858181..863479-chr9:867333..871768,4	MCF-7	breast:
50	chr9:893619..895667-chr9:1001274..1003528,2	MCF-7	breast:

(count:29 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf66-6	chr9:1041219-1041345	XLOC_007630
2	lnc-DMRT3-1	chr9:974188-974410	NONHSAT129952
3	lnc-DMRT2-3	chr9:1037151-1038637	l_3724_chr9:1035597-1038637_adipose
4	lnc-DMRT2-1	chr9:1045834-1046069	XLOC_007262
5	lnc-DMRT2-1	chr9:1047151-1048732	XLOC_007262
6	lnc-DMRT2-1	chr9:1047151-1049242	XLOC_007262
7	lnc-C9orf66-11	chr9:1031868-1032520	NONHSAT129957
8	lnc-DMRT3-5	chr9:1051571-1051622	NONHSAT129963
9	lnc-DMRT3-4	chr9:1011710-1011799	NONHSAT129956
10	lnc-C9orf66-10	chr9:964189-964410	uc_248_-
11	lnc-DMRT2-1	chr9:1046079-1047957	NONHSAT129961
12	lnc-DMRT3-5	chr9:1050621-1050775	NONHSAT129963
13	lnc-DMRT3-2	chr9:964189-964410	uc_248_+
14	lnc-DMRT3-5	chr9:1050356-1050482	NONHSAT129963
15	lnc-DMRT2-1	chr9:1048594-1048630	XLOC_007262
16	lnc-DMRT2-1	chr9:1048594-1048638	NONHSAT129961
17	lnc-DMRT3-4	chr9:1011085-1011386	NONHSAT129956
18	lnc-DMRT3-3	chr9:959154-959514	uc_247_+
19	lnc-DMRT2-1	chr9:1046079-1047957	XLOC_007262
20	lnc-DMRT2-1	chr9:1046419-1046776	XLOC_007262
21	lnc-DMRT2-1	chr9:1046579-1046776	XLOC_007262
22	lnc-DMRT2-1	chr9:1045426-1045800	XLOC_007262
23	lnc-C9orf66-11	chr9:1031219-1031345	NONHSAT129957
24	lnc-DMRT2-1	chr9:1046579-1046776	XLOC_007262
25	lnc-DMRT2-3	chr9:1035598-1035800	l_3724_chr9:1035597-1038637_adipose
26	lnc-C9orf66-9	chr9:959154-959514	uc_247_-
27	lnc-C9orf66-6	chr9:1041868-1042520	XLOC_007630
28	lnc-DMRT2-1	chr9:1047151-1048732	XLOC_007262
29	lnc-DMRT2-3	chr9:1036576-1036776	l_3724_chr9:1035597-1038637_adipose

No data

Variant related genes	Relation type
DMRT2	TF binding region
ENSG00000228783	TF binding region
RNU6-1073P	TF binding region
DMRT3	TF binding region
DMRT1	TF binding region
DMRT2	CpG island
ENSG00000228783	CpG island
RNU6-1073P	CpG island
DMRT3	CpG island
DMRT1	CpG island
ENSG00000173253	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000064218	chromatin interactions
ENSG00000252991	chromatin interactions
PSMA2	miRNA target sites
PPARG	miRNA target sites
PPARA	miRNA target sites

Extended variants
information (count: 8620 )
Associated
traits (count: 115 )

Variant overlapped rSNPs/rCNVs (count:8620 , 50 per page) page: 1 2 3 4 5 6 7 ... 173

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs912062	chr9:841152-841153	Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	disease
2	rs189325673	chr9:841166-841167	Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs552112775	chr9:841180-841181	Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs565683643	chr9:841191-841192	Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs150861677	chr9:841216-841217	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs192325913	chr9:841221-841222	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs138354742	chr9:841236-841237	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs111571457	chr9:841248-841249	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs569580175	chr9:841257-841258	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs184471011	chr9:841263-841264	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs556896509	chr9:841270-841271	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs4510916	chr9:841271-841272	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs539558482	chr9:841281-841282	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs553284004	chr9:841283-841284	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs190222416	chr9:841285-841286	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs541861328	chr9:841341-841342	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
17	rs555624852	chr9:841349-841350	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
18	rs181367602	chr9:841360-841361	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
19	rs544756806	chr9:841368-841369	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
20	rs543601863	chr9:841369-841370	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
21	rs564536217	chr9:841398-841399	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs367857696	chr9:841411-841412	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs142805780	chr9:841413-841414	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs3841193	chr9:841419-841420	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs386731473	chr9:841423-841424	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs912061	chr9:841424-841425	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs528080542	chr9:841438-841439	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
28	rs534488145	chr9:841450-841451	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
29	rs568331095	chr9:841483-841484	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
30	rs147396931	chr9:841511-841512	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs550708668	chr9:841534-841535	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs139779796	chr9:841549-841550	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs539664753	chr9:841553-841554	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs546678451	chr9:841640-841641	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
35	rs566658997	chr9:841689-841690	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs535435358	chr9:841690-841691	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs149965643	chr9:841731-841732	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs3739585	chr9:841742-841743	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs541918930	chr9:841748-841749	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs538161586	chr9:841760-841761	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs558476492	chr9:841778-841779	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs144122237	chr9:841785-841786	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs540857825	chr9:841791-841792	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs3739584	chr9:841825-841826	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs142703931	chr9:841837-841838	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs147366726	chr9:841842-841843	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs199867033	chr9:841862-841863	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
48	rs139583942	chr9:841866-841867	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
49	rs572998698	chr9:841868-841869	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
50	rs541809176	chr9:841882-841883	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:115)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Myelofibrosis	22110671	CNVD
Lynch syndrome	18415027	CNVD
Retinoblastoma	21504564	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	22286061	CNVD
Williams-beuren syndrome	18553513	CNVD
Disorders of sex development	21048976	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
prenatal diagnosis	20453657	CNVD
Gastric cancer	16715143	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	20531469	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	21272361	CNVD
Ependymoma	20639864	CNVD
Non-small cell lung cancer	16651412	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
T-cell lymphomas	22341440	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Ovarian cancer	21781307	CNVD
Amyotrophic lateral sclerosis	20685689	CNVD
Autism	22495311	CNVD

Chromatin state (count:2668 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:840000-841800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:840200-841200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
3	chr9:840200-841200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
4	chr9:840400-841600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:840600-841600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:840800-841400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr9:841000-841200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
8	chr9:841000-841200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
9	chr9:841000-841400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:841000-841600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr9:841000-843400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
12	chr9:841200-841400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr9:841200-841400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
14	chr9:841200-841400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:841200-841400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr9:841200-841400	Bivalent Enhancer	Fetal Thymus	thymus
17	chr9:841200-841600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
18	chr9:841200-841600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:841200-841600	Flanking Bivalent TSS/Enh	A549	lung
20	chr9:841200-841800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:841200-841800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
22	chr9:841200-841800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:841200-842000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
24	chr9:841200-842400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:841200-843200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
26	chr9:841200-843200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:841200-843200	Bivalent Enhancer	Liver	Liver
28	chr9:841200-843400	Bivalent Enhancer	Fetal Muscle Leg	muscle
29	chr9:841200-843400	Bivalent Enhancer	Placenta	Placenta
30	chr9:841400-841600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr9:841400-841600	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr9:841400-841600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
33	chr9:841400-841600	Bivalent Enhancer	Fetal Lung	lung
34	chr9:841400-841600	Bivalent Enhancer	Stomach Mucosa	stomach
35	chr9:841400-841800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:841400-841800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:841400-841800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
38	chr9:841400-841800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
39	chr9:841400-841800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
40	chr9:841400-841800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr9:841400-841800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
42	chr9:841400-841800	Bivalent Enhancer	Fetal Intestine Large	intestine
43	chr9:841400-841800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
44	chr9:841400-841800	Bivalent Enhancer	Fetal Stomach	stomach
45	chr9:841400-842000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
46	chr9:841400-842000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
47	chr9:841400-842000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
48	chr9:841400-842000	Bivalent Enhancer	Lung	lung
49	chr9:841400-842000	Bivalent Enhancer	Spleen	Spleen
50	chr9:841400-842000	Bivalent Enhancer	HMEC	breast

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