Variant report

Variant	nsv899415
Chromosome Location	chr12:87442480-87528020
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:87507574..87509719-chr12:87517143..87519195,2	MCF-7	breast:
2	chr12:87512190..87514558-chr12:87523597..87525941,2	K562	blood:
3	chr12:87512654..87515691-chr12:87528653..87530382,3	MCF-7	breast:
4	chr12:87507574..87509719-chr12:87517143..87519195,2	MCF-7	breast:
5	chr12:87523604..87525877-chr12:87529351..87531918,2	MCF-7	breast:
6	chr12:87513960..87515515-chr12:87520858..87523427,2	MCF-7	breast:
7	chr12:87513960..87515515-chr12:87520858..87523427,2	MCF-7	breast:
8	chr12:87512190..87514558-chr12:87523597..87525941,2	K562	blood:

No data

Extended variants
information (count: 1627 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:1627 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11104251	chr12:87442480-87442481	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs541462882	chr12:87442510-87442511	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs68030146	chr12:87442537-87442538	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs116004581	chr12:87442583-87442584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs544638850	chr12:87442584-87442585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs140700404	chr12:87442596-87442597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs150095210	chr12:87442622-87442623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs138636008	chr12:87442735-87442736	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs567460935	chr12:87442758-87442759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs187663115	chr12:87442770-87442771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs536262595	chr12:87442771-87442772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs527623173	chr12:87442779-87442780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs550074484	chr12:87442808-87442809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs149327866	chr12:87442824-87442825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs539021316	chr12:87442825-87442826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs566177109	chr12:87442912-87442913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs192152835	chr12:87442958-87442959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs549367698	chr12:87442993-87442994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs2897503	chr12:87443020-87443021	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs574998920	chr12:87443026-87443027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs373290084	chr12:87443037-87443038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs538824832	chr12:87443047-87443048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs146976006	chr12:87443088-87443089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs138117992	chr12:87443139-87443140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs577157207	chr12:87443145-87443146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs544600050	chr12:87443198-87443199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs564540913	chr12:87443220-87443221	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs527352204	chr12:87443237-87443238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs182694933	chr12:87443264-87443265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs560894876	chr12:87443328-87443329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs529879148	chr12:87443334-87443335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs187825077	chr12:87443360-87443361	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs113824530	chr12:87443366-87443367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs115321033	chr12:87443390-87443391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs192748805	chr12:87443398-87443399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs143892885	chr12:87443479-87443480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs566089298	chr12:87443501-87443502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs534780343	chr12:87443644-87443645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs572674670	chr12:87443648-87443649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs568493711	chr12:87443658-87443659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs147270112	chr12:87443708-87443709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs184200616	chr12:87443722-87443723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs12230862	chr12:87443750-87443751	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs568485901	chr12:87443882-87443883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs539750834	chr12:87443883-87443884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs553949100	chr12:87443903-87443904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs558093255	chr12:87443909-87443910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs189393518	chr12:87443917-87443918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs192660467	chr12:87443919-87443920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs12318261	chr12:87443921-87443922	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17899364	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	21390271	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	22032731	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Ovarian cancer	21720365	CNVD
Acute myeloid leukemia	20729466	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Renal cell carcinoma	18194544	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	21364760	CNVD
Multiple myeloma	17550852	CNVD
Melanoma	17363583	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Urothelial cell carcinoma	18451213	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute lymphoblastic leukemia	17443227	CNVD

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87442000-87448400	Weak transcription	Fetal Brain Male	brain
2	chr12:87445000-87445800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:87445200-87446200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:87445400-87445800	Enhancers	A549	lung
5	chr12:87446200-87448000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:87447800-87448600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:87448000-87448600	Enhancers	Fetal Brain Female	brain
8	chr12:87448000-87448800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr12:87448400-87449200	Enhancers	Fetal Brain Male	brain
10	chr12:87448600-87452000	Weak transcription	Fetal Brain Female	brain
11	chr12:87449200-87452400	Weak transcription	Fetal Brain Male	brain
12	chr12:87452000-87453600	Enhancers	Fetal Brain Female	brain
13	chr12:87452400-87452800	Enhancers	Fetal Brain Male	brain
14	chr12:87459200-87460400	Enhancers	Fetal Lung	lung
15	chr12:87468800-87469800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr12:87480000-87480400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:87480400-87480600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr12:87480600-87481000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:87489800-87490200	Enhancers	Fetal Brain Female	brain
20	chr12:87490000-87492200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr12:87490200-87491200	Weak transcription	Fetal Brain Female	brain
22	chr12:87491200-87491400	Enhancers	Fetal Brain Female	brain
23	chr12:87492200-87492600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
24	chr12:87499200-87499400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:87499200-87501400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr12:87499600-87500600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr12:87500600-87501600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr12:87500600-87502600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:87500600-87502800	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr12:87500800-87502400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr12:87501000-87501200	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr12:87501000-87501400	Enhancers	H1 Cell Line	embryonic stem cell
33	chr12:87501000-87502600	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr12:87501000-87502800	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr12:87501200-87501600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr12:87501200-87502800	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr12:87501400-87501800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr12:87501400-87502400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr12:87501400-87502600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr12:87501600-87502400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr12:87501600-87502800	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr12:87501800-87503000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr12:87502400-87502600	Enhancers	H1 Cell Line	embryonic stem cell
44	chr12:87502400-87502600	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr12:87502600-87502800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr12:87502600-87510600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr12:87503000-87506800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr12:87505800-87507000	Enhancers	Fetal Brain Male	brain
49	chr12:87506000-87506200	Enhancers	Fetal Brain Female	brain
50	chr12:87506200-87509400	Weak transcription	Fetal Brain Female	brain

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