Variant report

Variant	nsv900762
Chromosome Location	chr13:87073397-87353400
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:87315449..87317669-chr13:87358524..87360044,2	K562	blood:
2	chr13:87241740..87242445-chr18:33767395..33768288,2	Hela-S3	cervix:
3	chr13:86748899..86749431-chr13:87116065..87116706,2	MCF-7	breast:
4	chr13:87135766..87136435-chr2:216743335..216743848,2	MCF-7	breast:
5	chr13:87248984..87250484-chr17:56706669..56710573,3	MCF-7	breast:
6	chr13:87219118..87219726-chr13:87393723..87394529,2	MCF-7	breast:
7	chr13:86659406..86660238-chr13:87098032..87098996,2	MCF-7	breast:
8	chr13:87219147..87219853-chr13:87926507..87927098,2	MCF-7	breast:
9	chr13:87219074..87220049-chr13:87393792..87394360,2	MCF-7	breast:
10	chr13:87248984..87251964-chr17:56706206..56708752,2	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-13	chr13:87121092-87121529	l_895_chr13:87064439-87121529_brain
2	lnc-SLITRK6-13	chr13:87121092-87121219	NONHSAT034575
3	lnc-SLITRK5-20	chr13:87254030-87254064	NONHSAT034579
4	lnc-SLITRK6-13	chr13:87121092-87121515	NONHSAT034577
5	lnc-SLITRK5-20	chr13:87253266-87253330	NONHSAT034579
6	lnc-SLITRK6-13	chr13:87121092-87121362	NONHSAT034578
7	lnc-SLITRK5-20	chr13:87251292-87251535	NONHSAT034579

No data

Variant related genes	Relation type
ENSG00000075643	chromatin interactions
ENSG00000212055	chromatin interactions
ENSG00000212195	chromatin interactions
ENSG00000260552	chromatin interactions

Extended variants
information (count: 2411 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:2411 , 50 per page) page: 1 2 3 4 5 6 7 ... 49

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs572332215	chr13:87076245-87076246	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs181005173	chr13:87076248-87076249	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs150371667	chr13:87076260-87076261	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs138055269	chr13:87076309-87076310	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs566807582	chr13:87076359-87076360	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs578170795	chr13:87076385-87076386	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs538985857	chr13:87076409-87076410	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs187126927	chr13:87076441-87076442	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs192507056	chr13:87076532-87076533	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs184046361	chr13:87076555-87076556	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs139843810	chr13:87076562-87076563	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs183243142	chr13:87076564-87076565	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs116448882	chr13:87076615-87076616	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs186132393	chr13:87076623-87076624	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs541186530	chr13:87076694-87076695	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs190109889	chr13:87076761-87076762	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs182764309	chr13:87076788-87076789	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs372562156	chr13:87076791-87076792	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs187287326	chr13:87076823-87076824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs192264008	chr13:87076883-87076884	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs183018849	chr13:87076911-87076912	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs149085463	chr13:87076924-87076925	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs549029631	chr13:87077071-87077072	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs567356947	chr13:87077102-87077103	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs374226946	chr13:87077122-87077123	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs114018100	chr13:87077140-87077141	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs547146162	chr13:87077155-87077156	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs571752960	chr13:87077171-87077172	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs16962097	chr13:87077190-87077191	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs188755113	chr13:87077197-87077198	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs193254593	chr13:87077274-87077275	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs558832864	chr13:87077302-87077303	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs73539165	chr13:87077313-87077314	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs572971283	chr13:87077351-87077352	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs35052139	chr13:87077377-87077378	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs138599765	chr13:87077387-87077388	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs553091815	chr13:87077396-87077397	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs577752277	chr13:87077401-87077402	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs1502057	chr13:87077433-87077434	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs537501887	chr13:87077491-87077492	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs141602073	chr13:87077513-87077514	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs530861195	chr13:87077539-87077540	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs542610543	chr13:87077556-87077557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs374365267	chr13:87077565-87077566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs556237378	chr13:87077567-87077568	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs560893245	chr13:87077623-87077624	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs528144901	chr13:87077625-87077626	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs546389425	chr13:87077634-87077635	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs184189517	chr13:87077672-87077673	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs188988498	chr13:87077684-87077685	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Non-small cell lung cancer	16651412	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Osteosarcoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Breast cancer	17142309	CNVD

Chromatin state (count:133 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87076200-87078200	Enhancers	Fetal Lung	lung
2	chr13:87076800-87077800	Enhancers	Adipose Nuclei	Adipose
3	chr13:87076800-87078200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:87077200-87077800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:87077400-87078200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:87090000-87091000	Enhancers	Hela-S3	cervix
7	chr13:87090000-87091400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr13:87090000-87092400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:87090200-87091600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:87091400-87091800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr13:87092400-87096200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:87096200-87096600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:87096600-87098000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:87097400-87098000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:87097600-87098600	Enhancers	NH-A	brain
16	chr13:87097800-87099000	Enhancers	Hela-S3	cervix
17	chr13:87097800-87099200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:87098000-87098400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:87098000-87099000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:87098000-87099000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr13:87098000-87099000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr13:87098000-87099200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr13:87098000-87099800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr13:87098000-87100000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr13:87098200-87099000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr13:87098200-87099000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr13:87098400-87098800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr13:87098400-87098800	Enhancers	Fetal Lung	lung
29	chr13:87098400-87099000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr13:87098400-87099400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr13:87098600-87099000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr13:87098800-87099800	Weak transcription	Fetal Lung	lung
33	chr13:87098800-87102800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr13:87099800-87100000	Enhancers	Fetal Lung	lung
35	chr13:87105200-87105600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr13:87116400-87117200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr13:87116800-87117000	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr13:87117200-87118200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr13:87117200-87118200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr13:87118200-87118600	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr13:87118200-87118600	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr13:87118200-87118800	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr13:87118200-87118800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr13:87118400-87118600	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr13:87129000-87129200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr13:87129000-87129200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr13:87134200-87134800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr13:87134200-87134800	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr13:87134200-87135600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr13:87134400-87135200	Enhancers	HUES48 Cell Line	embryonic stem cell

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