Variant report

Variant	nsv900767
Chromosome Location	chr13:87093875-87204838
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:86748899..86749431-chr13:87116065..87116706,2	MCF-7	breast:
2	chr13:87135766..87136435-chr2:216743335..216743848,2	MCF-7	breast:
3	chr13:86659406..86660238-chr13:87098032..87098996,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-13	chr13:87121092-87121362	NONHSAT034578
2	lnc-SLITRK6-13	chr13:87121092-87121529	l_895_chr13:87064439-87121529_brain
3	lnc-SLITRK6-13	chr13:87121092-87121515	NONHSAT034577
4	lnc-SLITRK6-13	chr13:87121092-87121219	NONHSAT034575

No data

Variant related genes	Relation type
ENSG00000212055	chromatin interactions

Extended variants
information (count: 635 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:635 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9558361	chr13:87093875-87093876	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs551955295	chr13:87093891-87093892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs570228248	chr13:87093908-87093909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs374103584	chr13:87093984-87093985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs537766002	chr13:87094026-87094027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs549447139	chr13:87094027-87094028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs117767217	chr13:87094046-87094047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs534743069	chr13:87094049-87094050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs147555579	chr13:87094053-87094054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs540893294	chr13:87094070-87094071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs369103527	chr13:87094123-87094124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs141891817	chr13:87094129-87094130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs370003696	chr13:87094148-87094149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs142720983	chr13:87094160-87094161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs372652157	chr13:87094165-87094166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs112460964	chr13:87094182-87094183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs544907387	chr13:87094241-87094242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs557952514	chr13:87094269-87094270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs116113811	chr13:87094373-87094374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs181701426	chr13:87094390-87094391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs143812203	chr13:87094398-87094399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs375960254	chr13:87094418-87094419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs574994335	chr13:87094420-87094421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs56296477	chr13:87094427-87094428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs561988546	chr13:87094441-87094442	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs573672537	chr13:87094454-87094455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs78994529	chr13:87094461-87094462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs559446207	chr13:87094485-87094486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs533072023	chr13:87094490-87094491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs545237716	chr13:87094493-87094494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs76925752	chr13:87094507-87094508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs77116263	chr13:87094524-87094525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs549648600	chr13:87094559-87094560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs35151821	chr13:87094588-87094589	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs528428674	chr13:87094614-87094615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs141042507	chr13:87094647-87094648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs150233457	chr13:87094651-87094652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs185662548	chr13:87094652-87094653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs557206667	chr13:87094656-87094657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs570995872	chr13:87094664-87094665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs536893757	chr13:87094680-87094681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs555663183	chr13:87094688-87094689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs191363627	chr13:87094690-87094691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs182615538	chr13:87094720-87094721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs187623429	chr13:87094743-87094744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs577601943	chr13:87094806-87094807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs545066788	chr13:87094820-87094821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs9519451	chr13:87094833-87094834	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs138872716	chr13:87094834-87094835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs531126042	chr13:87094886-87094887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Non-small cell lung cancer	16651412	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87092400-87096200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:87096200-87096600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:87096600-87098000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:87097400-87098000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:87097600-87098600	Enhancers	NH-A	brain
6	chr13:87097800-87099000	Enhancers	Hela-S3	cervix
7	chr13:87097800-87099200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:87098000-87098400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:87098000-87099000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:87098000-87099000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr13:87098000-87099000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr13:87098000-87099200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr13:87098000-87099800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr13:87098000-87100000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr13:87098200-87099000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:87098200-87099000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr13:87098400-87098800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr13:87098400-87098800	Enhancers	Fetal Lung	lung
19	chr13:87098400-87099000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr13:87098400-87099400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr13:87098600-87099000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr13:87098800-87099800	Weak transcription	Fetal Lung	lung
23	chr13:87098800-87102800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr13:87099800-87100000	Enhancers	Fetal Lung	lung
25	chr13:87105200-87105600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr13:87116400-87117200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr13:87116800-87117000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr13:87117200-87118200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr13:87117200-87118200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr13:87118200-87118600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr13:87118200-87118600	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr13:87118200-87118800	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr13:87118200-87118800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr13:87118400-87118600	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr13:87129000-87129200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr13:87129000-87129200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr13:87134200-87134800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr13:87134200-87134800	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr13:87134200-87135600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr13:87134400-87135200	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr13:87163000-87163600	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr13:87193800-87195000	Active TSS	ES-I3 Cell Line	embryonic stem cell
43	chr13:87194200-87194600	Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr13:87194200-87194600	Active TSS	Hela-S3	cervix

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