Variant report

Variant	nsv900768
Chromosome Location	chr13:87116479-87204838
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:86748899..86749431-chr13:87116065..87116706,2	MCF-7	breast:
2	chr13:87135766..87136435-chr2:216743335..216743848,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-13	chr13:87121092-87121529	l_895_chr13:87064439-87121529_brain
2	lnc-SLITRK6-13	chr13:87121092-87121219	NONHSAT034575
3	lnc-SLITRK6-13	chr13:87121092-87121515	NONHSAT034577
4	lnc-SLITRK6-13	chr13:87121092-87121362	NONHSAT034578

No data

Variant related genes	Relation type
ENSG00000212055	chromatin interactions

Extended variants
information (count: 245 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:245 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1393272	chr13:87116479-87116480	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs370745487	chr13:87116497-87116498	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs370841698	chr13:87116543-87116544	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs117555112	chr13:87116593-87116594	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs374225040	chr13:87116613-87116614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs528083582	chr13:87116618-87116619	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs546239275	chr13:87116651-87116652	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs528909501	chr13:87116652-87116653	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs538825837	chr13:87116655-87116656	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs551140675	chr13:87116674-87116675	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs569380382	chr13:87116705-87116706	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs559307971	chr13:87116761-87116762	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs374405364	chr13:87116782-87116783	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs138614191	chr13:87116784-87116785	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs111690917	chr13:87116799-87116800	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs566832535	chr13:87116864-87116865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs116347869	chr13:87116865-87116866	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs559067115	chr13:87116876-87116877	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs577401266	chr13:87116905-87116906	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs551456742	chr13:87116945-87116946	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs571665091	chr13:87117009-87117010	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs557115212	chr13:87117027-87117028	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs575388867	chr13:87117032-87117033	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs183627826	chr13:87117038-87117039	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs188078464	chr13:87117074-87117075	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs528047703	chr13:87117092-87117093	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs368878995	chr13:87117128-87117129	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs539855886	chr13:87117142-87117143	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs564575890	chr13:87117151-87117152	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs148876703	chr13:87117154-87117155	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs547186275	chr13:87117155-87117156	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs34654697	chr13:87117175-87117176	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs78282310	chr13:87117227-87117228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs192729943	chr13:87117353-87117354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs565637901	chr13:87117375-87117376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs370973978	chr13:87117383-87117384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs536768452	chr13:87117404-87117405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs182148823	chr13:87117505-87117506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs186886095	chr13:87117516-87117517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs567193972	chr13:87117526-87117527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs534530687	chr13:87117527-87117528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs558969911	chr13:87117540-87117541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs143529230	chr13:87117569-87117570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs148700553	chr13:87117587-87117588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs141403305	chr13:87117588-87117589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs386380065	chr13:87117591-87117592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs56326366	chr13:87117595-87117596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs200926403	chr13:87117596-87117597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs201018974	chr13:87117598-87117599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs556389194	chr13:87117611-87117612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Non-small cell lung cancer	16651412	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87116400-87117200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr13:87116800-87117000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:87117200-87118200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:87117200-87118200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:87118200-87118600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:87118200-87118600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr13:87118200-87118800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr13:87118200-87118800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr13:87118400-87118600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr13:87129000-87129200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr13:87129000-87129200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr13:87134200-87134800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:87134200-87134800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr13:87134200-87135600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr13:87134400-87135200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr13:87163000-87163600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr13:87193800-87195000	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr13:87194200-87194600	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr13:87194200-87194600	Active TSS	Hela-S3	cervix

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