Variant report

Variant	nsv900776
Chromosome Location	chr13:87407377-87596606
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr13:87522825-87522873	K562	blood:	n/a	n/a
2	ATF1	chr13:87534480-87534795	K562	blood:	n/a	n/a
3	ATF1	chr13:87561569-87561897	K562	blood:	n/a	n/a
4	ATF1	chr13:87535053-87535541	K562	blood:	n/a	n/a
5	ATF2	chr13:87533625-87533952	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr13:87534270-87534796	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr13:87534377-87534846	H1-hESC	embryonic stem cell:	n/a	n/a
8	BCL11A	chr13:87533665-87533941	H1-hESC	embryonic stem cell:	n/a	n/a
9	CCNT2	chr13:87535109-87535399	K562	blood:	n/a	n/a
10	CEBPB	chr13:87546429-87546598	H1-hESC	embryonic stem cell:	n/a	chr13:87546483-87546494 chr13:87546515-87546526
11	CEBPB	chr13:87475251-87475602	IMR90	lung:	n/a	chr13:87475414-87475425
12	CEBPB	chr13:87535059-87535367	K562	blood:	n/a	chr13:87535277-87535288
13	CEBPB	chr13:87464946-87465050	H1-hESC	embryonic stem cell:	n/a	n/a
14	CEBPB	chr13:87442694-87442975	HepG2	liver:	n/a	chr13:87442822-87442833
15	CEBPB	chr13:87546337-87546663	HepG2	liver:	n/a	chr13:87546483-87546494 chr13:87546515-87546526
16	CEBPB	chr13:87433605-87433805	HepG2	liver:	n/a	chr13:87433727-87433738
17	CEBPB	chr13:87475314-87475565	A549	lung:	n/a	chr13:87475414-87475425
18	CEBPB	chr13:87575260-87575510	MCF-7	breast:	n/a	n/a
19	CEBPB	chr13:87525573-87525763	HepG2	liver:	n/a	chr13:87525610-87525621
20	CEBPB	chr13:87438052-87438302	HepG2	liver:	n/a	n/a
21	CEBPB	chr13:87533644-87534006	H1-hESC	embryonic stem cell:	n/a	n/a
22	CEBPB	chr13:87464869-87465069	IMR90	lung:	n/a	n/a
23	CEBPB	chr13:87575160-87575465	MCF-7	breast:	n/a	n/a
24	CEBPB	chr13:87528428-87528706	HepG2	liver:	n/a	n/a
25	CEBPB	chr13:87482236-87482598	Hela-S3	cervix:	n/a	n/a
26	CEBPB	chr13:87546354-87546670	Hela-S3	cervix:	n/a	chr13:87546483-87546494 chr13:87546515-87546526
27	CEBPB	chr13:87593860-87594049	A549	lung:	n/a	n/a
28	CEBPB	chr13:87534327-87534679	H1-hESC	embryonic stem cell:	n/a	n/a
29	CEBPB	chr13:87535123-87535452	K562	blood:	n/a	chr13:87535277-87535288
30	CEBPB	chr13:87509486-87509874	IMR90	lung:	n/a	n/a
31	CEBPB	chr13:87438070-87438276	A549	lung:	n/a	n/a
32	CEBPB	chr13:87438092-87438193	H1-hESC	embryonic stem cell:	n/a	n/a
33	CEBPB	chr13:87593817-87594091	HepG2	liver:	n/a	n/a
34	CEBPB	chr13:87569830-87570107	HepG2	liver:	n/a	chr13:87569929-87569940
35	CEBPB	chr13:87409455-87409760	H1-hESC	embryonic stem cell:	n/a	n/a
36	CEBPB	chr13:87442738-87442952	A549	lung:	n/a	chr13:87442822-87442833
37	CEBPB	chr13:87475265-87475574	HepG2	liver:	n/a	chr13:87475414-87475425
38	CEBPB	chr13:87558087-87558399	IMR90	lung:	n/a	chr13:87558216-87558229 chr13:87558218-87558229 chr13:87558218-87558227 chr13:87558218-87558227 chr13:87558218-87558227 chr13:87558218-87558227
39	CEBPB	chr13:87535120-87535586	HepG2	liver:	n/a	chr13:87535277-87535288
40	CEBPB	chr13:87469814-87470097	HepG2	liver:	n/a	chr13:87469948-87469959
41	CHD1	chr13:87534405-87534566	H1-hESC	embryonic stem cell:	n/a	n/a
42	CHD2	chr13:87534426-87534744	H1-hESC	embryonic stem cell:	n/a	n/a
43	CHD2	chr13:87409528-87409776	H1-hESC	embryonic stem cell:	n/a	n/a
44	CTBP2	chr13:87585062-87585614	H1-hESC	embryonic stem cell:	n/a	n/a
45	CTCF	chr13:87522740-87522863	GM20000	blood:	n/a	chr13:87522807-87522820 chr13:87522806-87522827 chr13:87522804-87522822 chr13:87522807-87522815
46	CTCF	chr13:87522680-87522830	HepG2	liver:	n/a	chr13:87522807-87522820 chr13:87522806-87522827 chr13:87522804-87522822 chr13:87522807-87522815
47	CTCF	chr13:87546736-87546791	GM20000	blood:	n/a	n/a
48	CTCF	chr13:87522735-87522918	GM13976	blood:	n/a	chr13:87522807-87522820 chr13:87522806-87522827 chr13:87522804-87522822 chr13:87522807-87522815
49	CTCF	chr13:87522780-87522930	HAc	cerebellar:	n/a	chr13:87522807-87522820 chr13:87522806-87522827 chr13:87522804-87522822 chr13:87522807-87522815
50	CTCF	chr13:87522780-87522930	HepG2	liver:	n/a	chr13:87522807-87522820 chr13:87522806-87522827 chr13:87522804-87522822 chr13:87522807-87522815

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:87444712-87444762	SAEC	small airway:	n/a
2	chr13:87444712-87444762	SKMC	muscle:	n/a
3	chr13:87444696-87444746	HepG2	liver:	n/a
4	chr13:87444696-87444746	Caco-2	colon:	n/a
5	chr13:87444712-87444762	MCF-7	breast:	n/a
6	chr13:87444696-87444746	NB4	blood:	n/a
7	chr13:87444712-87444762	U87	brain:	n/a
8	chr13:87444696-87444746	HRCEpiC	kidney:	n/a
9	chr13:87444712-87444762	GM12892	blood:	n/a
10	chr13:87444712-87444762	K562	blood:	n/a
11	chr13:87444696-87444746	HCF	heart:	n/a
12	chr13:87444712-87444762	NB4	blood:	n/a
13	chr13:87444696-87444746	H1-hESC	embryonic stem cell:	embryo
14	chr13:87444712-87444762	A549	lung:	n/a
15	chr13:87444696-87444746	ECC-1	luminal epithelium:	n/a
16	chr13:87444712-87444762	SK-N-SH_RA	brain:	n/a
17	chr13:87444712-87444762	HRPEpiC	eye:	n/a
18	chr13:87444712-87444762	HAEpiC	amniotic membrane:	n/a
19	chr13:87444712-87444762	NH-A	brain:	n/a
20	chr13:87444696-87444746	HUVEC	blood vessel:	n/a
21	chr13:87444712-87444762	Hepatocyte	liver:	n/a
22	chr13:87444712-87444762	HPAEpiC	pulmonary alveolar:	n/a
23	chr13:87444712-87444762	HUVEC	blood vessel:	n/a
24	chr13:87444712-87444762	AG09309	skin:	n/a
25	chr13:87444696-87444746	HRE	kidney:	n/a
26	chr13:87444696-87444746	GM12892	blood:	n/a
27	chr13:87444696-87444746	HCPEpiC	choroid plexus:	n/a
28	chr13:87444696-87444746	HRPEpiC	eye:	n/a
29	chr13:87444712-87444762	HCM	heart:	n/a
30	chr13:87444696-87444746	HPAEpiC	pulmonary alveolar:	n/a
31	chr13:87444712-87444762	SK-N-SH	brain:	n/a
32	chr13:87444696-87444746	SKMC	muscle:	n/a
33	chr13:87444696-87444746	CMK	blood:	n/a
34	chr13:87444696-87444746	GM12891	blood:	n/a
35	chr13:87444712-87444762	GM06990	blood:	n/a
36	chr13:87444712-87444762	Jurkat	blood:	n/a
37	chr13:87444696-87444746	PFSK-1	brain:	n/a
38	chr13:87444712-87444762	H1-hESC	embryonic stem cell:	embryo
39	chr13:87444712-87444762	HCT-116	colon:	n/a
40	chr13:87444696-87444746	Hela-S3	cervix:	n/a
41	chr13:87444696-87444746	BE2_C	brain:	n/a
42	chr13:87444712-87444762	GM12891	blood:	n/a
43	chr13:87444712-87444762	NHBE	bronchial:	n/a
44	chr13:87444696-87444746	SK-N-SH	brain:	n/a
45	chr13:87444712-87444762	AoSMC	blood vessel:	n/a
46	chr13:87444696-87444746	NT2-D1	testis:	n/a
47	chr13:87444712-87444762	AG10803	skin:	n/a
48	chr13:87444696-87444746	HAEpiC	amniotic membrane:	n/a
49	chr13:87444696-87444746	GM06990	blood:	n/a
50	chr13:87444712-87444762	HEEpiC	esophagus:	n/a

No.	Distal block	Cell Line	Cell type
1	chr13:87465454..87468131-chr13:87475693..87478573,2	MCF-7	breast:
2	chr13:87422380..87424249-chr13:87425366..87427570,2	K562	blood:
3	chr13:87530439..87532752-chr13:87534404..87536619,2	K562	blood:
4	chr13:87422380..87424249-chr13:87425366..87427570,2	K562	blood:
5	chr13:87530439..87532752-chr13:87534404..87536619,2	K562	blood:
6	chr13:87522311..87523294-chr13:87926162..87927045,5	MCF-7	breast:
7	chr13:87465454..87468131-chr13:87475693..87478573,2	MCF-7	breast:
8	chr11:3376919..3379551-chr13:87416799..87418315,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK5-6	chr13:87588831-87589062	XLOC_010461
2	lnc-SLITRK5-6	chr13:87564173-87564236	ENSG00000233528.3
3	lnc-SLITRK5-6	chr13:87564173-87564236	XLOC_010461
4	lnc-SLITRK5-6	chr13:87588831-87589271	ENSG00000233528.3

Variant related genes	Relation type
LINC00430	TF binding region
LINC00430	CpG island

Extended variants
information (count: 4664 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:4664 , 50 per page) page: 1 2 3 4 5 6 7 ... 94

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529059373	chr13:87409220-87409221	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs77085063	chr13:87409239-87409240	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs150152166	chr13:87409270-87409271	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs531010440	chr13:87409293-87409294	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs191842615	chr13:87409302-87409303	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs561411463	chr13:87409337-87409338	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs145611698	chr13:87409343-87409344	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs148912602	chr13:87409371-87409372	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs536490609	chr13:87409376-87409377	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs571424461	chr13:87409391-87409392	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs538708778	chr13:87409454-87409455	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs184157566	chr13:87409475-87409476	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs565609344	chr13:87409477-87409478	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs551165987	chr13:87409494-87409495	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs539048206	chr13:87409505-87409506	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs76219525	chr13:87409511-87409512	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs200754820	chr13:87409521-87409522	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs189475047	chr13:87409544-87409545	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs555668808	chr13:87409557-87409558	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs573831832	chr13:87409568-87409569	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs569309550	chr13:87409587-87409588	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs182103570	chr13:87409661-87409662	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs185840042	chr13:87409696-87409697	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs188871853	chr13:87409708-87409709	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs545074057	chr13:87409753-87409754	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs563230152	chr13:87409797-87409798	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs538177658	chr13:87409820-87409821	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs542834615	chr13:87409873-87409874	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs561649984	chr13:87409884-87409885	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs80230998	chr13:87409907-87409908	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs9515899	chr13:87409970-87409971	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs546598822	chr13:87409978-87409979	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs12869804	chr13:87409979-87409980	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs532369037	chr13:87409980-87409981	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs550700993	chr13:87409986-87409987	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs542030464	chr13:87410028-87410029	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs569235222	chr13:87410033-87410034	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs537278736	chr13:87410064-87410065	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs548875991	chr13:87410067-87410068	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs77189174	chr13:87410075-87410076	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs552548988	chr13:87410078-87410079	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs534873304	chr13:87410079-87410080	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs569061641	chr13:87410096-87410097	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs181617252	chr13:87410101-87410102	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs73557512	chr13:87410109-87410110	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs185941337	chr13:87410110-87410111	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs572533116	chr13:87410111-87410112	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs557051115	chr13:87410137-87410138	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs188409791	chr13:87410160-87410161	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs564518785	chr13:87410163-87410164	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Breast cancer	17142309	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:273 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87409200-87409800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr13:87409200-87410000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr13:87409200-87411200	Enhancers	HMEC	breast
4	chr13:87409400-87409800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:87409400-87410000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr13:87409400-87410000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:87409600-87410000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:87409600-87410400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:87409800-87411400	Active TSS	Primary T cells fromperipheralblood	blood
10	chr13:87409800-87411400	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
11	chr13:87409800-87416800	Active TSS	Fetal Thymus	thymus
12	chr13:87416800-87417000	Flanking Active TSS	Fetal Thymus	thymus
13	chr13:87417000-87417200	Active TSS	Fetal Thymus	thymus
14	chr13:87417200-87417800	Flanking Active TSS	Fetal Thymus	thymus
15	chr13:87417800-87418400	Active TSS	Fetal Thymus	thymus
16	chr13:87418000-87418200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr13:87439800-87442600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr13:87440200-87441200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:87440400-87441200	Enhancers	Brain Angular Gyrus	brain
20	chr13:87440600-87441200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr13:87440800-87441200	Enhancers	Brain Anterior Caudate	brain
22	chr13:87440800-87441200	Enhancers	Brain Substantia Nigra	brain
23	chr13:87441200-87441800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr13:87441200-87444400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr13:87441800-87442000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr13:87443800-87444400	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr13:87444000-87444400	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr13:87444400-87444600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr13:87444400-87444600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr13:87450200-87450600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:87450200-87450600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr13:87452600-87453200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr13:87455200-87455600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr13:87456600-87478400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr13:87462200-87463400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:87462200-87463400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr13:87462400-87462800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr13:87462400-87463200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr13:87462800-87463000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr13:87463000-87463200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr13:87465400-87465800	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr13:87465600-87466000	Enhancers	H9 Cell Line	embryonic stem cell
43	chr13:87465600-87466000	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr13:87474600-87474800	Enhancers	Liver	Liver
45	chr13:87475000-87477200	Weak transcription	Liver	Liver
46	chr13:87477200-87478400	Enhancers	Liver	Liver
47	chr13:87478400-87478600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr13:87478600-87480000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr13:87479000-87479600	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr13:87479400-87479600	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links