Variant report

Variant	nsv912309
Chromosome Location	chr19:53092465-53440653
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6068)
CpG islands
(count:6658)
Chromatin interactive
region (count:144)
LncRNA
region (count:92)
Mature miRNA
region (count: 0)
miRNA target
sites (count:6)

(count:6068 , 50 per page) page: 1 2 3 4 5 6 7 ... 122

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:53228598-53228749	K562	blood:	n/a	n/a
2	ARID3A	chr19:53168737-53169156	K562	blood:	n/a	n/a
3	ARID3A	chr19:53193641-53193781	HepG2	liver:	n/a	n/a
4	ARID3A	chr19:53439543-53440078	K562	blood:	n/a	n/a
5	ARID3A	chr19:53192180-53192511	HepG2	liver:	n/a	n/a
6	ARID3A	chr19:53238204-53238593	HepG2	liver:	n/a	n/a
7	ARID3A	chr19:53192381-53192469	K562	blood:	n/a	n/a
8	ARID3A	chr19:53228340-53228382	K562	blood:	n/a	n/a
9	ARID3A	chr19:53227189-53227366	K562	blood:	n/a	n/a
10	ARID3A	chr19:53161930-53162203	HepG2	liver:	n/a	n/a
11	ARID3A	chr19:53427687-53427726	K562	blood:	n/a	n/a
12	ARID3A	chr19:53104339-53104539	HepG2	liver:	n/a	n/a
13	ARID3A	chr19:53438785-53438996	K562	blood:	n/a	n/a
14	ARID3A	chr19:53227580-53227746	HepG2	liver:	n/a	n/a
15	ARID3A	chr19:53141435-53141564	K562	blood:	n/a	n/a
16	ARID3A	chr19:53191096-53191296	K562	blood:	n/a	n/a
17	ARID3A	chr19:53199511-53199604	HepG2	liver:	n/a	n/a
18	ARID3A	chr19:53195806-53196040	K562	blood:	n/a	n/a
19	ARID3A	chr19:53193667-53194024	K562	blood:	n/a	n/a
20	ATF1	chr19:53219224-53219418	K562	blood:	n/a	n/a
21	ATF1	chr19:53150020-53150354	K562	blood:	n/a	n/a
22	ATF1	chr19:53289778-53290273	K562	blood:	n/a	n/a
23	ATF1	chr19:53233027-53233245	K562	blood:	n/a	n/a
24	ATF1	chr19:53439468-53440101	K562	blood:	n/a	n/a
25	ATF1	chr19:53227069-53227523	K562	blood:	n/a	n/a
26	ATF1	chr19:53238100-53238672	K562	blood:	n/a	n/a
27	ATF1	chr19:53193490-53194355	K562	blood:	n/a	n/a
28	ATF1	chr19:53168873-53169110	K562	blood:	n/a	n/a
29	ATF1	chr19:53427511-53427796	K562	blood:	n/a	n/a
30	ATF1	chr19:53260119-53260246	K562	blood:	n/a	n/a
31	ATF1	chr19:53426298-53426976	K562	blood:	n/a	n/a
32	ATF2	chr19:53141325-53141694	GM12878	blood:	n/a	n/a
33	ATF2	chr19:53426188-53426746	GM12878	blood:	n/a	n/a
34	ATF2	chr19:53281984-53282357	GM12878	blood:	n/a	n/a
35	ATF2	chr19:53239019-53239370	H1-hESC	embryonic stem cell:	n/a	n/a
36	ATF2	chr19:53238937-53239428	H1-hESC	embryonic stem cell:	n/a	n/a
37	ATF3	chr19:53168777-53169106	K562	blood:	n/a	n/a
38	ATF3	chr19:53238046-53238465	K562	blood:	n/a	n/a
39	ATF3	chr19:53439515-53439954	K562	blood:	n/a	n/a
40	ATF3	chr19:53438666-53438971	K562	blood:	n/a	n/a
41	ATF3	chr19:53427509-53427761	K562	blood:	n/a	n/a
42	ATF3	chr19:53228814-53229132	K562	blood:	n/a	n/a
43	ATF3	chr19:53194034-53194304	K562	blood:	n/a	n/a
44	BACH1	chr19:53426291-53426669	H1-hESC	embryonic stem cell:	n/a	n/a
45	BACH1	chr19:53324738-53324945	H1-hESC	embryonic stem cell:	n/a	n/a
46	BACH1	chr19:53360719-53361014	H1-hESC	embryonic stem cell:	n/a	n/a
47	BACH1	chr19:53115944-53116444	K562	blood:	n/a	n/a
48	BACH1	chr19:53439760-53439843	K562	blood:	n/a	n/a
49	BACH1	chr19:53141538-53141574	K562	blood:	n/a	n/a
50	BACH1	chr19:53426374-53426640	K562	blood:	n/a	n/a

(count:6658 , 50 per page) page: 1 2 3 4 5 6 7 ... 134

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:53098913-53098963	RPTEC	kidney:	n/a
2	chr19:53193912-53193962	HPAEpiC	pulmonary alveolar:	n/a
3	chr19:53426802-53426852	GM19239	blood:	n/a
4	chr19:53325080-53325130	BE2_C	brain:	n/a
5	chr19:53289524-53289574	HCM	heart:	n/a
6	chr19:53361066-53361116	MCF10A-Er-Src	breast:	n/a
7	chr19:53342580-53342630	MCF-7	breast:	n/a
8	chr19:53238337-53238387	NT2-D1	testis:	n/a
9	chr19:53194699-53194749	T-47D	breast:	n/a
10	chr19:53098913-53098963	RPTEC	kidney:	n/a
11	chr19:53193912-53193962	HPAEpiC	pulmonary alveolar:	n/a
12	chr19:53426802-53426852	GM19239	blood:	n/a
13	chr19:53325080-53325130	BE2_C	brain:	n/a
14	chr19:53289524-53289574	HCM	heart:	n/a
15	chr19:53361066-53361116	MCF10A-Er-Src	breast:	n/a
16	chr19:53342580-53342630	MCF-7	breast:	n/a
17	chr19:53238337-53238387	NT2-D1	testis:	n/a
18	chr19:53194699-53194749	T-47D	breast:	n/a
19	chr19:53324278-53324328	SK-N-SH	brain:	n/a
20	chr19:53342580-53342630	SK-N-SH_RA	brain:	n/a
21	chr19:53325080-53325130	LNCaP	prostate:	n/a
22	chr19:53238337-53238387	GM19239	blood:	n/a
23	chr19:53394977-53395027	LNCaP	prostate:	n/a
24	chr19:53207899-53207949	GM12878	blood:	n/a
25	chr19:53426388-53426438	AG04449	skin:	fetal
26	chr19:53142304-53142354	GM12892	blood:	n/a
27	chr19:53290126-53290176	PANC-1	pancreas:	n/a
28	chr19:53239200-53239250	HCT-116	colon:	n/a
29	chr19:53360213-53360263	NB4	blood:	n/a
30	chr19:53400981-53401031	HNPCEpiC	eye:	n/a
31	chr19:53361066-53361116	GM06990	blood:	n/a
32	chr19:53290147-53290197	HRCEpiC	kidney:	n/a
33	chr19:53289933-53289983	SK-N-SH	brain:	n/a
34	chr19:53363482-53363532	ProgFib	skin:	n/a
35	chr19:53360728-53360778	Hela-S3	cervix:	n/a
36	chr19:53141394-53141444	HIPEpiC	eye:	n/a
37	chr19:53430697-53430747	RPTEC	kidney:	n/a
38	chr19:53194695-53194745	NH-A	brain:	n/a
39	chr19:53229766-53229816	Hela-S3	cervix:	n/a
40	chr19:53290445-53290495	ovcar-3	ovarian:	n/a
41	chr19:53193466-53193516	HEK293	kidney:	embryo
42	chr19:53139159-53139209	PANC-1	pancreas:	n/a
43	chr19:53293012-53293062	SK-N-MC	brain:	n/a
44	chr19:53142146-53142196	LNCaP	prostate:	n/a
45	chr19:53326091-53326141	SK-N-SH	brain:	n/a
46	chr19:53393512-53393562	HCT-116	colon:	n/a
47	chr19:53142106-53142156	ECC-1	luminal epithelium:	n/a
48	chr19:53429005-53429055	HEEpiC	esophagus:	n/a
49	chr19:53363482-53363532	HMEC	breast:	n/a
50	chr19:53293012-53293062	HEEpiC	esophagus:	n/a

(count:144 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr19:53185339..53188409-chr19:53192365..53195013,3	K562	blood:
2	chr19:53426133..53428640-chr19:53444456..53447019,4	K562	blood:
3	chr19:52406735..52408758-chr19:53114766..53117318,2	K562	blood:
4	chr19:53399773..53402425-chr19:53424830..53427617,2	MCF-7	breast:
5	chr19:53193532..53195862-chr19:53359115..53361191,3	K562	blood:
6	chr19:53139623..53144311-chr19:53192220..53194807,4	MCF-7	breast:
7	chr19:53425636..53428538-chr19:53430721..53433929,3	K562	blood:
8	chr19:53091479..53093203-chr19:53104357..53107211,2	MCF-7	breast:
9	chr19:53398338..53401958-chr19:53425181..53428572,6	K562	blood:
10	chr19:53431907..53434266-chr19:53444043..53446544,2	K562	blood:
11	chr19:53109944..53111454-chr19:53116244..53117812,2	K562	blood:
12	chr19:53424791..53427731-chr19:53464365..53467863,4	K562	blood:
13	chr19:53296635..53299410-chr19:53311177..53313587,2	K562	blood:
14	chr19:53185339..53187127-chr19:53191376..53195013,3	K562	blood:
15	chr19:53426133..53428140-chr19:53445241..53446971,2	K562	blood:
16	chr18:61637223..61637841-chr19:53397208..53398194,2	Hela-S3	cervix:
17	chr19:53115087..53117490-chr19:53126115..53129040,2	K562	blood:
18	chr19:53109871..53112715-chr19:53114135..53116216,3	K562	blood:
19	chr19:53425069..53426727-chr19:53438910..53441039,3	K562	blood:
20	chr19:53193334..53193838-chr19:53445297..53445972,2	Hela-S3	cervix:
21	chr19:53227642..53230112-chr19:53236849..53239461,2	K562	blood:
22	chr19:53399145..53401987-chr19:53438300..53441406,3	K562	blood:
23	chr19:53322321..53326212-chr19:53359240..53361245,4	K562	blood:
24	chr19:53199473..53201886-chr19:53208932..53211700,2	K562	blood:
25	chr19:53148354..53151033-chr19:53154176..53155920,2	K562	blood:
26	chr19:53335113..53339470-chr19:53340101..53344099,5	K562	blood:
27	chr19:53393138..53396276-chr19:53398172..53401096,6	MCF-7	breast:
28	chr19:53400554..53402197-chr19:53402529..53405491,2	MCF-7	breast:
29	chr19:53103475..53106137-chr19:53106571..53108256,2	K562	blood:
30	chr19:53237008..53239147-chr19:53540786..53542527,2	MCF-7	breast:
31	chr19:53115970..53118193-chr19:53236786..53238588,2	K562	blood:
32	chr19:53418400..53422745-chr19:53423096..53427800,7	K562	blood:
33	chr19:53105962..53107575-chr19:53107742..53110699,2	MCF-7	breast:
34	chr19:53110484..53113305-chr19:53117534..53120246,3	K562	blood:
35	chr19:53115087..53117490-chr19:53126115..53129040,2	K562	blood:
36	chr19:53103475..53106137-chr19:53106571..53108256,2	K562	blood:
37	chr19:53169045..53171439-chr19:53172531..53174974,2	K562	blood:
38	chr19:53115970..53118193-chr19:53236786..53238588,2	K562	blood:
39	chr19:53226674..53228672-chr19:53232730..53234940,2	K562	blood:
40	chr19:53324563..53325122-chr19:53360322..53360852,2	NB4	blood:
41	chr19:53139623..53144311-chr19:53192220..53194807,4	MCF-7	breast:
42	chr19:53280779..53283746-chr19:53287922..53290818,5	K562	blood:
43	chr19:53359757..53362433-chr19:53464752..53467349,2	MCF-7	breast:
44	chr19:53215678..53217452-chr19:53219568..53222029,2	K562	blood:
45	chr19:53124557..53126496-chr19:53127801..53130626,2	K562	blood:
46	chr19:53030382..53031999-chr19:53102744..53106373,4	K562	blood:
47	chr14:93214475..93215046-chr19:53237894..53238692,2	Hela-S3	cervix:
48	chr19:53412333..53414642-chr19:53425536..53427807,2	K562	blood:
49	chr19:53193532..53195862-chr19:53359115..53361191,3	K562	blood:
50	chr19:53393138..53396276-chr19:53398172..53401096,6	MCF-7	breast:

(count:92 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF468-1	chr19:53348432-53348549	NR_102299
2	lnc-ZNF701-2	chr19:53342913-53343520	NONHSAT067585
3	lnc-ZNF468-1	chr19:53360825-53360902	NR_102299
4	lnc-ZNF701-1	chr19:53102400-53103405	NONHSAT067569
5	lnc-ZNF701-1	chr19:53099127-53099572	NONHSAT067568
6	lnc-ZNF320-2	chr19:53393514-53393581	NONHSAT067594
7	lnc-ZNF320-1	chr19:53398098-53398409	NONHSAT067593
8	lnc-ZNF320-2	chr19:53393562-53393581	NONHSAT067595
9	lnc-ZNF468-1	chr19:53360825-53360902	NR_102301
10	lnc-ZNF701-1	chr19:53098870-53100598	NONHSAT067565
11	lnc-ZNF320-2	chr19:53394482-53394599	NONHSAT067595
12	lnc-ZNF701-1	chr19:53099792-53100056	NONHSAT067566
13	lnc-ZNF701-1	chr19:53095355-53095481	NONHSAT067564
14	lnc-ZNF468-1	chr19:53357511-53357598	NR_102301
15	lnc-ZNF320-1	chr19:53379431-53379838	NONHSAT067593
16	lnc-ZNF701-1	chr19:53095291-53095481	NONHSAT067565
17	lnc-ZNF83-3	chr19:53211457-53211582	NONHSAT067577
18	lnc-ZNF83-5	chr19:53238254-53238268	NONHSAT067580
19	lnc-ZNF468-1	chr19:53357511-53357598	NR_102300
20	lnc-ZNF701-1	chr19:53101468-53102058	NONHSAT067569
21	lnc-ZNF600-1	chr19:53289848-53290044	NONHSAT067582
22	lnc-ZNF816-1	chr19:53430388-53432667	NR_037805
23	lnc-ZNF611-1	chr19:53153690-53156537	ENSG00000269825.1
24	lnc-ZNF83-3	chr19:53211674-53212084	NONHSAT067577
25	lnc-ZNF600-1	chr19:53284570-53284717	NONHSAT067583
26	lnc-ZNF468-1	chr19:53341785-53345404	NR_102300
27	lnc-ZNF320-3	chr19:53382704-53382886	NONHSAT067592
28	lnc-ZNF320-2	chr19:53398644-53399035	NONHSAT067597
29	lnc-ZNF701-1	chr19:53098870-53098941	NONHSAT067564
30	lnc-ZNF468-1	chr19:53357125-53357360	NR_102300
31	lnc-ZNF701-1	chr19:53099792-53099841	NONHSAT067568
32	lnc-ZNF468-1	chr19:53357125-53357379	NR_102299
33	lnc-ZNF468-1	chr19:53357511-53357598	NR_102299
34	lnc-ZNF468-1	chr19:53360825-53360902	NR_102300
35	lnc-ZNF320-3	chr19:53367043-53367412	NONHSAT067591
36	lnc-ZNF320-2	chr19:53400773-53400908	NONHSAT067594
37	lnc-ZNF701-1	chr19:53100112-53100660	NONHSAT067566
38	lnc-ZNF468-3	chr19:53324839-53324886	NONHSAT067588
39	lnc-ZNF320-3	chr19:53377245-53377325	NONHSAT067591
40	lnc-ZNF468-1	chr19:53352340-53352466	NR_102300
41	lnc-ZNF468-3	chr19:53321197-53321281	NONHSAT067589
42	lnc-VN1R2-12	chr19:53426635-53426717	ENSG00000269646.1
43	lnc-ZNF701-2	chr19:53301030-53301858	NONHSAT067586
44	lnc-ZNF83-5	chr19:53224406-53224520	NONHSAT067579
45	lnc-ZNF320-3	chr19:53377411-53377490	NONHSAT067591
46	lnc-ZNF83-5	chr19:53231983-53232084	NONHSAT067580
47	lnc-ZNF701-1	chr19:53099657-53099709	NONHSAT067568
48	lnc-ZNF83-5	chr19:53226674-53227917	NONHSAT067581
49	lnc-ZNF83-5	chr19:53231983-53232084	NONHSAT067579
50	lnc-ZNF83-5	chr19:53233159-53233258	NONHSAT067580

No data

(count:6 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	ZNF28	hsa-miR-155-5p	chr19:53301652-53301677
2	ZNF83	hsa-miR-155-5p	chr19:53116240-53116261
3	ZNF320	hsa-miR-192-5p	chr19:53381440-53381461
4	ZNF611	hsa-miR-155-5p	chr19:53207486-53207509
5	ZNF83	hsa-miR-155-5p	chr19:53115871-53115891
6	ZNF28	hsa-miR-155-5p	chr19:53301585-53301611

Variant related genes	Relation type
ZNF137P	TF binding region
ZNF611	TF binding region
ENSG00000268225	TF binding region
ZNF320	TF binding region
ZNF28	TF binding region
ZNF468	TF binding region
ENSG00000269825	TF binding region
ENSG00000269646	TF binding region
ENSG00000268970	TF binding region
ENSG00000255875	TF binding region
ZNF888	TF binding region
ENSG00000268886	TF binding region
ZNF600	TF binding region
ZNF83	TF binding region
ZNF816-ZNF321P	TF binding region
ZNF137P	CpG island
ZNF611	CpG island
ENSG00000268225	CpG island
ZNF320	CpG island
ZNF28	CpG island
ZNF468	CpG island
ENSG00000269825	CpG island
ENSG00000269646	CpG island
ENSG00000268970	CpG island
ENSG00000255875	CpG island
ZNF888	CpG island
ENSG00000268886	CpG island
ZNF600	CpG island
ZNF83	CpG island
ZNF816-ZNF321P	CpG island
ENSG00000198093	chromatin interactions
ENSG00000213020	chromatin interactions
ENSG00000189190	chromatin interactions
ENSG00000123870	chromatin interactions
ENSG00000221874	chromatin interactions
ENSG00000170949	chromatin interactions
ENSG00000180257	chromatin interactions
ENSG00000167766	chromatin interactions
ENSG00000255875	chromatin interactions
ENSG00000213793	chromatin interactions
ENSG00000198482	chromatin interactions
ENSG00000167562	chromatin interactions
ENSG00000198538	chromatin interactions
ENSG00000160336	chromatin interactions
ENSG00000182986	chromatin interactions
ENSG00000242779	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000166401	chromatin interactions
ENSG00000269825	chromatin interactions
ENSG00000173209	chromatin interactions
ENSG00000196214	chromatin interactions
ENSG00000268970	chromatin interactions
ENSG00000204604	chromatin interactions
ENSG00000241015	chromatin interactions
ENSG00000100600	chromatin interactions
ENSG00000213801	chromatin interactions
ENSG00000269646	chromatin interactions
LMNB1	miRNA target sites
HAUS6	miRNA target sites
PCBP2	miRNA target sites

Extended variants
information (count: 18099 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:18099 , 50 per page) page: 1 2 3 4 5 6 7 ... 362

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7247002	chr19:53092465-53092466	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs534560170	chr19:53092526-53092527	Weak transcription Strong transcription ZNF genes & repeats	CpG island	2 gene(s)	Overlapped CNVs	n/a
3	rs552772949	chr19:53092529-53092530	Weak transcription Strong transcription ZNF genes & repeats	CpG island	2 gene(s)	Overlapped CNVs	n/a
4	rs181081224	chr19:53092617-53092618	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs538440259	chr19:53092624-53092625	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs558259817	chr19:53092657-53092658	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs76045752	chr19:53092659-53092660	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs540488493	chr19:53092697-53092698	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs80276669	chr19:53092731-53092732	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs66784804	chr19:53092732-53092733	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs4439874	chr19:53092745-53092746	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs200214985	chr19:53092767-53092768	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs576456053	chr19:53092775-53092776	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs543877667	chr19:53092795-53092796	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs556911958	chr19:53092805-53092806	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs140725442	chr19:53092857-53092858	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs369190415	chr19:53092858-53092859	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs2126500	chr19:53092895-53092896	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs185918770	chr19:53092923-53092924	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs2126501	chr19:53092942-53092943	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs533605632	chr19:53092944-53092945	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs545247646	chr19:53093050-53093051	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs563441131	chr19:53093058-53093059	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs192443864	chr19:53093080-53093081	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs7251579	chr19:53093106-53093107	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs377750103	chr19:53093107-53093108	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs113026101	chr19:53093115-53093116	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs541040054	chr19:53093141-53093142	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs536053230	chr19:53093148-53093149	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs182208858	chr19:53093172-53093173	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs369829553	chr19:53093187-53093188	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs2868496	chr19:53093193-53093194	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs550492092	chr19:53093195-53093196	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs570143914	chr19:53093198-53093199	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs537495272	chr19:53093220-53093221	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs555818158	chr19:53093222-53093223	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs186322578	chr19:53093235-53093236	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs7250819	chr19:53093236-53093237	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs190668477	chr19:53093266-53093267	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs10411152	chr19:53093275-53093276	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs545595788	chr19:53093277-53093278	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs563686173	chr19:53093325-53093326	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs5828512	chr19:53093360-53093361	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs575019631	chr19:53093411-53093412	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs542281505	chr19:53093417-53093418	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs560636253	chr19:53093440-53093441	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs528104108	chr19:53093470-53093471	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs185875277	chr19:53093472-53093473	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs371180132	chr19:53093487-53093488	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs115617670	chr19:53093528-53093529	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	17431168	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Pancreatic cancer	17952125	CNVD
Melanoma	20877625	CNVD
Adrenocortical carcinoma	18281524	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD
Lung adenocarcinoma	21935476	CNVD

Chromatin state (count:12144 , 50 per page) page: 1 2 3 4 5 6 7 ... 243

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53074600-53103600	Weak transcription	Fetal Brain Male	brain
2	chr19:53076400-53096000	Strong transcription	Dnd41	blood
3	chr19:53079400-53094200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
4	chr19:53079400-53096000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr19:53087400-53095200	Weak transcription	Brain Anterior Caudate	brain
6	chr19:53087400-53103600	Weak transcription	Brain Substantia Nigra	brain
7	chr19:53087600-53095000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr19:53087600-53095400	Weak transcription	Fetal Kidney	kidney
9	chr19:53087600-53095400	Weak transcription	NHLF	lung
10	chr19:53087600-53099000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr19:53087600-53099000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr19:53087600-53099000	Weak transcription	NHDF-Ad	bronchial
13	chr19:53087600-53099400	Weak transcription	Brain Angular Gyrus	brain
14	chr19:53087600-53103600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr19:53087800-53095200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr19:53087800-53095200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr19:53087800-53095200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr19:53087800-53095400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr19:53087800-53095400	Weak transcription	K562	blood
20	chr19:53087800-53098800	Weak transcription	HSMMtube	muscle
21	chr19:53088200-53099000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr19:53088400-53092800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr19:53088400-53097600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr19:53088400-53099000	Weak transcription	HUVEC	blood vessel
25	chr19:53088400-53103600	Weak transcription	Psoas Muscle	Psoas
26	chr19:53088600-53094800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr19:53088600-53094800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr19:53088600-53095400	Weak transcription	Osteobl	bone
29	chr19:53088600-53095800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr19:53088600-53096000	Strong transcription	Fetal Stomach	stomach
31	chr19:53088600-53099200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr19:53088800-53093000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr19:53088800-53093200	Weak transcription	Aorta	Aorta
34	chr19:53088800-53093200	Weak transcription	Ovary	ovary
35	chr19:53088800-53093800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr19:53088800-53095400	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr19:53088800-53095600	Weak transcription	Adipose Nuclei	Adipose
38	chr19:53088800-53095800	Weak transcription	Pancreas	Pancrea
39	chr19:53088800-53098800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr19:53088800-53099000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr19:53088800-53099000	Weak transcription	Left Ventricle	heart
42	chr19:53088800-53099000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr19:53088800-53103600	Weak transcription	Colon Smooth Muscle	Colon
44	chr19:53088800-53103600	Weak transcription	Right Ventricle	heart
45	chr19:53088800-53103800	Weak transcription	Right Atrium	heart
46	chr19:53089000-53103800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr19:53089200-53093000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr19:53089200-53093800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr19:53089200-53094800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr19:53089200-53094800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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