Variant report

Variant	nsv947364
Chromosome Location	chr1:195746611-195752928
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:195751455..195751958-chr11:60643306..60644203,2	MCF-7	breast:
2	chr1:195750720..195752669-chr1:195758254..195760737,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547884569	chr1:195748614-195748615	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs140341445	chr1:195748682-195748683	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs372447916	chr1:195748700-195748701	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs546526381	chr1:195748744-195748745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs568337395	chr1:195748745-195748746	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs147026876	chr1:195748749-195748750	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs2942922	chr1:195748760-195748761	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs556869060	chr1:195748781-195748782	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs555151810	chr1:195750615-195750616	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs567381236	chr1:195750626-195750627	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs2989971	chr1:195750647-195750648	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs556381994	chr1:195750676-195750677	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs577878973	chr1:195750727-195750728	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs539774080	chr1:195750738-195750739	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs34784553	chr1:195750756-195750757	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs74787384	chr1:195750774-195750775	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs553722630	chr1:195750814-195750815	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs181968970	chr1:195750849-195750850	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs557751320	chr1:195750879-195750880	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs113349429	chr1:195750903-195750904	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs561205988	chr1:195750911-195750912	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs531871839	chr1:195750946-195750947	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs544036364	chr1:195750961-195750962	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs562675303	chr1:195750971-195750972	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	20688739	CNVD
Breast cancer	21611746	CNVD
primary effusion lymphomas	17116491	CNVD
Breast cancer	17393978	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Non-small cell lung cancer	19010865	CNVD
Mental retardation	17847001	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Trisomy 5 syndrome	21098271	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Mental retardation	21062444	CNVD
Liver carcinoma	19366792	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chordoma	18071362	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195748600-195748800	Enhancers	Spleen	Spleen
2	chr1:195750600-195751000	Enhancers	Fetal Brain Female	brain

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