Variant report

Variant	nsv947772
Chromosome Location	chr10:25825612-25827973
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25820653..25822435-chr10:25825054..25828032,2	K562	blood:

Extended variants
information (count: 82 )
Associated
traits (count: 44 )

Variant overlapped rSNPs/rCNVs (count:82 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs189729312	chr10:25825738-25825739	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs146891945	chr10:25825783-25825784	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs182343793	chr10:25825800-25825801	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs548833122	chr10:25825831-25825832	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs74628753	chr10:25825837-25825838	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs534471763	chr10:25825875-25825876	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs551552630	chr10:25825876-25825877	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs140717619	chr10:25825929-25825930	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs376511946	chr10:25825959-25825960	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs539908366	chr10:25825977-25825978	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs12221280	chr10:25825994-25825995	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs145752298	chr10:25826035-25826036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs536163901	chr10:25826160-25826161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs187713675	chr10:25826246-25826247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs74124066	chr10:25826250-25826251	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs12268579	chr10:25826356-25826357	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs558314839	chr10:25826382-25826383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs1029179	chr10:25826383-25826384	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs1029178	chr10:25826394-25826395	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs191967055	chr10:25826413-25826414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs528819523	chr10:25826417-25826418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs573260228	chr10:25826480-25826481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs1556665	chr10:25826486-25826487	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs76477796	chr10:25826594-25826595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs183656496	chr10:25826597-25826598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs140164999	chr10:25826642-25826643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs150330873	chr10:25826643-25826644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs550256903	chr10:25826706-25826707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs570066097	chr10:25826709-25826710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs535895102	chr10:25826710-25826711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs143467130	chr10:25826719-25826720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs562185902	chr10:25826724-25826725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs535304255	chr10:25826748-25826749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs35209690	chr10:25826770-25826771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs558089597	chr10:25826804-25826805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs188532064	chr10:25826805-25826806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs115030876	chr10:25826828-25826829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs145771796	chr10:25826854-25826855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs58691965	chr10:25826858-25826859	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs117879367	chr10:25826859-25826860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs558909901	chr10:25826867-25826868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs57222731	chr10:25826922-25826923	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs118085465	chr10:25826924-25826925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs564939233	chr10:25826951-25826952	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs564464492	chr10:25827058-25827059	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs530682163	chr10:25827127-25827128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs550789082	chr10:25827142-25827143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs561003713	chr10:25827143-25827144	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs570201020	chr10:25827144-25827145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs34703501	chr10:25827162-25827163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:44)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Glioblastoma multiforme	21525872	CNVD
Cancer	20164919	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25820000-25836800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:25825000-25826000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr10:25826000-25834600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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