Variant report

Variant	nsv960861
Chromosome Location	chr19:52662803-52663878
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:52659695..52662598-chr19:52663474..52665682,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF836-1	chr19:52663718-52663844	ENSG00000267827.1
2	lnc-ZNF836-1	chr19:52663718-52663844	ENSG00000267827.1

Extended variants
information (count: 29 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7254948	chr19:52662806-52662807	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs141582793	chr19:52662880-52662881	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs575519633	chr19:52663004-52663005	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs542227102	chr19:52663034-52663035	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs547728341	chr19:52663050-52663051	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs73575007	chr19:52663070-52663071	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs575607750	chr19:52663175-52663176	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs542910515	chr19:52663194-52663195	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs528149840	chr19:52663201-52663202	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs561629319	chr19:52663219-52663220	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs528829198	chr19:52663325-52663326	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs546718990	chr19:52663368-52663369	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs150474429	chr19:52663392-52663393	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs373677780	chr19:52663440-52663441	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs60370954	chr19:52663458-52663459	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs377746788	chr19:52663460-52663461	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs138282603	chr19:52663541-52663542	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs532219542	chr19:52663607-52663608	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs550711264	chr19:52663632-52663633	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs116344808	chr19:52663678-52663679	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs376255729	chr19:52663679-52663680	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs199551013	chr19:52663688-52663689	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs566752045	chr19:52663699-52663700	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs370403764	chr19:52663708-52663709	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs201691092	chr19:52663721-52663722	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
26	rs376958843	chr19:52663781-52663782	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs370077053	chr19:52663791-52663792	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs189280687	chr19:52663829-52663830	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs374347605	chr19:52663844-52663845	ZNF genes & repeats Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Adrenocortical carcinoma	18281524	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:153 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:52651600-52667200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:52653800-52670600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr19:52654000-52667200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:52654000-52669000	ZNF genes & repeats	Liver	Liver
5	chr19:52654400-52671600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr19:52654600-52669200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:52655600-52665600	ZNF genes & repeats	Fetal Lung	lung
8	chr19:52656200-52664000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
9	chr19:52656200-52666400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr19:52656400-52664600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
11	chr19:52656400-52665800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
12	chr19:52656400-52669000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
13	chr19:52656400-52669200	ZNF genes & repeats	Primary T cells from cord blood	blood
14	chr19:52656600-52667000	ZNF genes & repeats	Fetal Brain Female	brain
15	chr19:52656600-52668200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
16	chr19:52656800-52664600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr19:52656800-52665000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
18	chr19:52656800-52665200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
19	chr19:52656800-52666400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
20	chr19:52656800-52667200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
21	chr19:52656800-52669200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr19:52657000-52663800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
23	chr19:52657000-52666400	ZNF genes & repeats	Dnd41	blood
24	chr19:52657000-52666600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr19:52657400-52663000	ZNF genes & repeats	Left Ventricle	heart
26	chr19:52658000-52664600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
27	chr19:52659000-52663600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
28	chr19:52659000-52667000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
29	chr19:52659000-52668600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr19:52659400-52663400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr19:52659400-52671800	Strong transcription	Placenta Amnion	Placenta Amnion
32	chr19:52659600-52669000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
33	chr19:52660000-52669200	Strong transcription	Stomach Smooth Muscle	stomach
34	chr19:52660200-52666600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
35	chr19:52660400-52665200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr19:52660400-52665200	Weak transcription	Stomach Mucosa	stomach
37	chr19:52660400-52669200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr19:52660600-52669000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr19:52660800-52663600	ZNF genes & repeats	Fetal Stomach	stomach
40	chr19:52661600-52664000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
41	chr19:52661600-52669000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr19:52661600-52672200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr19:52661800-52663000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
44	chr19:52661800-52663000	Strong transcription	Placenta	Placenta
45	chr19:52661800-52663400	ZNF genes & repeats	Lung	lung
46	chr19:52661800-52664800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
47	chr19:52661800-52665600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
48	chr19:52661800-52666600	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr19:52661800-52667200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
50	chr19:52661800-52667200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood

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