Variant report

Variant	nsv963070
Chromosome Location	chr19:53091108-53105222
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:616)
CpG islands
(count:612)
Chromatin interactive
region (count:13)
LncRNA
region (count:23)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:616 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:53104339-53104539	HepG2	liver:	n/a	n/a
2	BACH1	chr19:53104565-53104775	H1-hESC	embryonic stem cell:	n/a	n/a
3	BCL11A	chr19:53103098-53103246	GM12878	blood:	n/a	n/a
4	BHLHE40	chr19:53105048-53105160	K562	blood:	n/a	n/a
5	BHLHE40	chr19:53104552-53104837	K562	blood:	n/a	n/a
6	BRCA1	chr19:53104242-53104408	H1-hESC	embryonic stem cell:	n/a	n/a
7	CBX3	chr19:53104158-53105094	K562	blood:	n/a	n/a
8	CCNT2	chr19:53104315-53104658	K562	blood:	n/a	chr19:53104426-53104435
9	CEBPB	chr19:53099899-53100273	HepG2	liver:	n/a	n/a
10	CEBPB	chr19:53099901-53100188	A549	lung:	n/a	n/a
11	CEBPD	chr19:53104439-53104726	HepG2	liver:	n/a	n/a
12	CHD1	chr19:53104493-53105133	GM12878	blood:	n/a	chr19:53104872-53104882
13	CHD2	chr19:53104533-53104762	K562	blood:	n/a	n/a
14	CHD2	chr19:53104297-53104823	Hela-S3	cervix:	n/a	chr19:53104469-53104479
15	CHD2	chr19:53104193-53104915	GM12878	blood:	n/a	chr19:53104469-53104479 chr19:53104872-53104882
16	CTCF	chr19:53104380-53104530	GM12872	blood:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
17	CTCF	chr19:53091576-53091671	Spleen_OC	spleen:	n/a	n/a
18	CTCF	chr19:53104340-53104490	AG10803	skin:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
19	CTCF	chr19:53094060-53094210	HMF	breast:	n/a	n/a
20	CTCF	chr19:53095640-53095790	GM12872	blood:	n/a	chr19:53095743-53095752
21	CTCF	chr19:53104320-53104470	MCF-7	breast:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
22	CTCF	chr19:53104037-53104043	MCF-7	breast:	n/a	n/a
23	CTCF	chr19:53095660-53095810	GM12866	blood:	n/a	chr19:53095743-53095752
24	CTCF	chr19:53104400-53104550	GM12868	blood:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
25	CTCF	chr19:53095688-53095839	H1-hESC	embryonic stem cell:	n/a	chr19:53095743-53095752
26	CTCF	chr19:53103960-53104110	HepG2	liver:	n/a	n/a
27	CTCF	chr19:53095700-53095850	GM12878	blood:	n/a	chr19:53095743-53095752
28	CTCF	chr19:53104280-53104430	GM12866	blood:	n/a	n/a
29	CTCF	chr19:53104400-53104550	HPAF	blood vessel:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
30	CTCF	chr19:53095680-53095830	GM12874	blood:	n/a	chr19:53095743-53095752
31	CTCF	chr19:53104355-53104539	K562	blood:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
32	CTCF	chr19:53105160-53105310	NHLF	lung:	n/a	n/a
33	CTCF	chr19:53093989-53094322	GM12878	blood:	n/a	n/a
34	CTCF	chr19:53104360-53104510	WERI-Rb-1	eye:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
35	CTCF	chr19:53094060-53094210	NHEK	skin:	n/a	n/a
36	CTCF	chr19:53095660-53095810	HFF-Myc	foreskin:	n/a	chr19:53095743-53095752
37	CTCF	chr19:53094120-53094220	Lung_OC	lung:	n/a	n/a
38	CTCF	chr19:53104333-53104530	Kidney_OC	kidney:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
39	CTCF	chr19:53094040-53094190	RPTEC	kidney:	n/a	n/a
40	CTCF	chr19:53104340-53104490	Hela-S3	cervix:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
41	CTCF	chr19:53104340-53104490	HBMEC	blood vessel:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
42	CTCF	chr19:53104380-53104530	GM12870	blood:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
43	CTCF	chr19:53094060-53094210	SK-N-SH_RA	brain:	n/a	n/a
44	CTCF	chr19:53094154-53094230	GM12891	blood:	n/a	n/a
45	CTCF	chr19:53094060-53094210	BE2_C	brain:	n/a	n/a
46	CTCF	chr19:53104360-53104510	HEK293	kidney:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
47	CTCF	chr19:53104380-53104530	HA-sp	spinal cord:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
48	CTCF	chr19:53094022-53094435	MCF-7	breast:	n/a	n/a
49	CTCF	chr19:53104400-53104550	NHDF-neo	bronchial:	n/a	chr19:53104432-53104450 chr19:53104434-53104447
50	CTCF	chr19:53094020-53094170	HCT-116	colon:	n/a	n/a

(count:612 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:53099757-53099807	A549	lung:	n/a
2	chr19:53092499-53092549	NHDF-neo	bronchial:	n/a
3	chr19:53099757-53099807	A549	lung:	n/a
4	chr19:53092499-53092549	NHDF-neo	bronchial:	n/a
5	chr19:53098913-53098963	U87	brain:	n/a
6	chr19:53098945-53098995	H1-hESC	embryonic stem cell:	embryo
7	chr19:53099796-53099846	SK-N-MC	brain:	n/a
8	chr19:53101634-53101684	HRPEpiC	eye:	n/a
9	chr19:53098913-53098963	IMR90	lung:	fetal
10	chr19:53099757-53099807	GM19239	blood:	n/a
11	chr19:53104879-53104929	HEK293	kidney:	embryo
12	chr19:53099757-53099807	HepG2	liver:	n/a
13	chr19:53098945-53098995	NT2-D1	testis:	n/a
14	chr19:53104398-53104448	HPAEpiC	pulmonary alveolar:	n/a
15	chr19:53092499-53092549	Jurkat	blood:	n/a
16	chr19:53104195-53104245	H1-hESC	embryonic stem cell:	embryo
17	chr19:53099796-53099846	ECC-1	luminal epithelium:	n/a
18	chr19:53101634-53101684	Caco-2	colon:	n/a
19	chr19:53099796-53099846	LNCaP	prostate:	n/a
20	chr19:53104879-53104929	GM06990	blood:	n/a
21	chr19:53104195-53104245	HRPEpiC	eye:	n/a
22	chr19:53098913-53098963	NHBE	bronchial:	n/a
23	chr19:53104997-53105047	H1-hESC	embryonic stem cell:	embryo
24	chr19:53104997-53105047	HUVEC	blood vessel:	n/a
25	chr19:53104398-53104448	RPTEC	kidney:	n/a
26	chr19:53104398-53104448	Caco-2	colon:	n/a
27	chr19:53104879-53104929	ECC-1	luminal epithelium:	n/a
28	chr19:53099796-53099846	MCF-7	breast:	n/a
29	chr19:53104879-53104929	PFSK-1	brain:	n/a
30	chr19:53099757-53099807	K562	blood:	n/a
31	chr19:53101634-53101684	GM06990	blood:	n/a
32	chr19:53092499-53092549	SK-N-SH_RA	brain:	n/a
33	chr19:53104195-53104245	SAEC	small airway:	n/a
34	chr19:53098913-53098963	AG09319	gingival:	n/a
35	chr19:53101634-53101684	IMR90	lung:	fetal
36	chr19:53104997-53105047	PFSK-1	brain:	n/a
37	chr19:53099796-53099846	BJ	skin:	n/a
38	chr19:53101634-53101684	AG10803	skin:	n/a
39	chr19:53104195-53104245	AG09309	skin:	n/a
40	chr19:53098913-53098963	AG04450	lung:	fetal
41	chr19:53101634-53101684	CMK	blood:	n/a
42	chr19:53104195-53104245	HEK293	kidney:	embryo
43	chr19:53104997-53105047	HMEC	breast:	n/a
44	chr19:53099796-53099846	HepG2	liver:	n/a
45	chr19:53099796-53099846	PANC-1	pancreas:	n/a
46	chr19:53098945-53098995	GM19239	blood:	n/a
47	chr19:53099757-53099807	HRPEpiC	eye:	n/a
48	chr19:53099796-53099846	PrEC	prostate:	n/a
49	chr19:53099796-53099846	NH-A	brain:	n/a
50	chr19:53098945-53098995	SK-N-SH	brain:	n/a

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:53104394..53106484-chr19:53154672..53157186,2	K562	blood:
2	chr19:53103475..53106137-chr19:53106571..53108256,2	K562	blood:
3	chr19:53098815..53100632-chr19:53103081..53105260,2	K562	blood:
4	chr19:53087080..53089827-chr19:53090383..53092275,2	K562	blood:
5	chr19:53085553..53087688-chr19:53089270..53091312,2	MCF-7	breast:
6	chr19:53100001..53102540-chr19:53104328..53106583,2	MCF-7	breast:
7	chr19:53030382..53031999-chr19:53102744..53106373,4	K562	blood:
8	chr19:53073369..53074894-chr19:53098457..53100751,2	MCF-7	breast:
9	chr10:79800834..79801581-chr19:53103963..53104926,2	Hela-S3	cervix:
10	chr19:53091479..53093203-chr19:53104357..53107211,2	MCF-7	breast:
11	chr19:52771721..52774334-chr19:53104602..53106334,2	MCF-7	breast:
12	chr19:53100919..53102551-chr19:53104466..53106179,2	MCF-7	breast:
13	chr19:53098492..53100632-chr19:53102754..53104581,2	K562	blood:

(count:23 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF701-1	chr19:53101468-53102058	NONHSAT067569
2	lnc-ZNF701-1	chr19:53100112-53100660	NONHSAT067567
3	lnc-ZNF701-1	chr19:53099657-53099709	NONHSAT067566
4	lnc-ZNF701-1	chr19:53099127-53099572	NONHSAT067568
5	lnc-ZNF701-1	chr19:53091758-53091866	NONHSAT067564
6	lnc-ZNF701-1	chr19:53099657-53099709	NONHSAT067568
7	lnc-ZNF701-1	chr19:53099792-53099841	NONHSAT067568
8	lnc-ZNF701-1	chr19:53095355-53095481	NONHSAT067564
9	lnc-ZNF83-2	chr19:53100952-53101356	ENSG00000268970.1
10	lnc-ZNF701-1	chr19:53100261-53100564	NONHSAT067568
11	lnc-ZNF701-1	chr19:53099127-53099572	NONHSAT067566
12	lnc-ZNF701-1	chr19:53098870-53100598	NONHSAT067565
13	lnc-ZNF83-2	chr19:53101902-53102140	ENSG00000268970.1
14	lnc-ZNF701-1	chr19:53095291-53095481	NONHSAT067565
15	lnc-ZNF701-1	chr19:53099127-53099642	NONHSAT067567
16	lnc-ZNF701-1	chr19:53100112-53100176	NONHSAT067568
17	lnc-ZNF701-1	chr19:53099937-53100823	NONHSAT067569
18	lnc-ZNF701-1	chr19:53100112-53100660	NONHSAT067566
19	lnc-ZNF701-1	chr19:53098870-53098941	NONHSAT067564
20	lnc-ZNF701-1	chr19:53100006-53100056	NONHSAT067568
21	lnc-ZNF701-1	chr19:53099792-53100056	NONHSAT067566
22	lnc-ZNF701-1	chr19:53102400-53103405	NONHSAT067569
23	lnc-ZNF701-1	chr19:53099890-53100056	NONHSAT067567

No data

Variant related genes	Relation type
ZNF137P	TF binding region
ENSG00000268970	TF binding region
ENSG00000268886	TF binding region
ZNF137P	CpG island
ENSG00000268970	CpG island
ENSG00000268886	CpG island
ENSG00000196214	chromatin interactions
ENSG00000268970	chromatin interactions
ENSG00000123870	chromatin interactions
ENSG00000167562	chromatin interactions
ENSG00000269825	chromatin interactions
ENSG00000268886	chromatin interactions
ENSG00000198482	chromatin interactions

Extended variants
information (count: 624 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:624 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs568642460	chr19:53091118-53091119	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs374703226	chr19:53091141-53091142	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs374220654	chr19:53091156-53091157	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs368082402	chr19:53091161-53091162	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs368303431	chr19:53091179-53091180	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs149236593	chr19:53091193-53091194	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs565758670	chr19:53091209-53091210	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs8103958	chr19:53091216-53091217	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs557723982	chr19:53091254-53091255	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs200821051	chr19:53091259-53091260	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs80180333	chr19:53091260-53091261	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs574420098	chr19:53091302-53091303	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs181428034	chr19:53091315-53091316	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs144455213	chr19:53091331-53091332	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs540809416	chr19:53091411-53091412	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs148417659	chr19:53091436-53091437	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs559788123	chr19:53091467-53091468	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs572495531	chr19:53091479-53091480	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs545888568	chr19:53091537-53091538	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs564458973	chr19:53091600-53091601	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs531933833	chr19:53091620-53091621	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs184028206	chr19:53091632-53091633	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs562353814	chr19:53091642-53091643	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
24	rs188366937	chr19:53091674-53091675	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs548006279	chr19:53091703-53091704	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs74176155	chr19:53091730-53091731	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs539477957	chr19:53091735-53091736	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs530487758	chr19:53091737-53091738	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs376707736	chr19:53091738-53091739	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs67036527	chr19:53091764-53091765	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs569604257	chr19:53091768-53091769	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
32	rs535640628	chr19:53091806-53091807	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
33	rs368563118	chr19:53091843-53091844	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
34	rs536959291	chr19:53091854-53091855	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
35	rs76923148	chr19:53091878-53091879	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs55833019	chr19:53091925-53091926	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs78271731	chr19:53091940-53091941	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs116024830	chr19:53091946-53091947	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs142568480	chr19:53091952-53091953	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs572452908	chr19:53091980-53091981	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs113625580	chr19:53092000-53092001	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs557883320	chr19:53092002-53092003	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs58246752	chr19:53092008-53092009	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs114824367	chr19:53092011-53092012	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs140128884	chr19:53092085-53092086	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs529601487	chr19:53092090-53092091	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
47	rs369035558	chr19:53092171-53092172	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
48	rs115281815	chr19:53092177-53092178	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs143831199	chr19:53092214-53092215	Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs146873186	chr19:53092261-53092262	Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	17431168	CNVD

Chromatin state (count:967 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53074600-53103600	Weak transcription	Fetal Brain Male	brain
2	chr19:53075400-53092200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:53075400-53092400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:53075400-53092400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
5	chr19:53076400-53096000	Strong transcription	Dnd41	blood
6	chr19:53079200-53092200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr19:53079400-53092200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
8	chr19:53079400-53094200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr19:53079400-53096000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
10	chr19:53079600-53091800	ZNF genes & repeats	Thymus	Thymus
11	chr19:53083600-53092400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr19:53083800-53092400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
13	chr19:53084600-53091200	ZNF genes & repeats	Colonic Mucosa	Colon
14	chr19:53085400-53091200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr19:53087400-53095200	Weak transcription	Brain Anterior Caudate	brain
16	chr19:53087400-53103600	Weak transcription	Brain Substantia Nigra	brain
17	chr19:53087600-53091600	Weak transcription	Fetal Lung	lung
18	chr19:53087600-53095000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr19:53087600-53095400	Weak transcription	Fetal Kidney	kidney
20	chr19:53087600-53095400	Weak transcription	NHLF	lung
21	chr19:53087600-53099000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr19:53087600-53099000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr19:53087600-53099000	Weak transcription	NHDF-Ad	bronchial
24	chr19:53087600-53099400	Weak transcription	Brain Angular Gyrus	brain
25	chr19:53087600-53103600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr19:53087800-53092200	Weak transcription	Brain Hippocampus Middle	brain
27	chr19:53087800-53095200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr19:53087800-53095200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr19:53087800-53095200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr19:53087800-53095400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr19:53087800-53095400	Weak transcription	K562	blood
32	chr19:53087800-53098800	Weak transcription	HSMMtube	muscle
33	chr19:53088200-53099000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr19:53088400-53092800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr19:53088400-53097600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr19:53088400-53099000	Weak transcription	HUVEC	blood vessel
37	chr19:53088400-53103600	Weak transcription	Psoas Muscle	Psoas
38	chr19:53088600-53094800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr19:53088600-53094800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr19:53088600-53095400	Weak transcription	Osteobl	bone
41	chr19:53088600-53095800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr19:53088600-53096000	Strong transcription	Fetal Stomach	stomach
43	chr19:53088600-53099200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr19:53088800-53091200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr19:53088800-53092000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr19:53088800-53093000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr19:53088800-53093200	Weak transcription	Aorta	Aorta
48	chr19:53088800-53093200	Weak transcription	Ovary	ovary
49	chr19:53088800-53093800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr19:53088800-53095400	Strong transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links