Variant report

Variant	nsv964417
Chromosome Location	chr20:25826346-25833541
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 544 )
Associated
traits (count: 44 )

Variant overlapped rSNPs/rCNVs (count:544 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs377119561	chr20:25826356-25826357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs368206280	chr20:25826407-25826408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs535734253	chr20:25826439-25826440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs201310784	chr20:25826442-25826443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs377205158	chr20:25826460-25826461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs2261342	chr20:25826480-25826481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs371767901	chr20:25826489-25826490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs59801718	chr20:25826511-25826512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs374797459	chr20:25826515-25826516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs565914863	chr20:25826519-25826520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs535052296	chr20:25826524-25826525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs202200292	chr20:25826536-25826537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs200491138	chr20:25826561-25826562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs201532644	chr20:25826570-25826571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs146546226	chr20:25826591-25826592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs149079036	chr20:25826603-25826604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs558274716	chr20:25826605-25826606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs578179131	chr20:25826624-25826625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs201345527	chr20:25826633-25826634	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs199652373	chr20:25826636-25826637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs200946072	chr20:25826644-25826645	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs370985193	chr20:25826645-25826646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs543938695	chr20:25826650-25826651	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs144227283	chr20:25826674-25826675	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs150337760	chr20:25826675-25826676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs185309732	chr20:25826677-25826678	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs141699067	chr20:25826702-25826703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs374358855	chr20:25826717-25826718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201383899	chr20:25826743-25826744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs200025692	chr20:25826762-25826763	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs139785677	chr20:25826805-25826806	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs557154837	chr20:25826807-25826808	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs375204904	chr20:25826810-25826811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs200625608	chr20:25826811-25826812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs113524530	chr20:25826815-25826816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs376305934	chr20:25826823-25826824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs368867141	chr20:25826841-25826842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs78308686	chr20:25826867-25826868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs573899110	chr20:25826870-25826871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs200741805	chr20:25826878-25826879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs181619716	chr20:25826885-25826886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs147631616	chr20:25826898-25826899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs201380461	chr20:25826900-25826901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs72490854	chr20:25826920-25826921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs372133966	chr20:25826926-25826927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs146145715	chr20:25826930-25826931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs77529248	chr20:25826935-25826936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs368895128	chr20:25826961-25826962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs542531761	chr20:25826970-25826971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs559624757	chr20:25826981-25826982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:44)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25824600-25828800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr20:25826000-25828800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr20:25826000-25829000	Weak transcription	Spleen	Spleen
4	chr20:25826000-25832200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr20:25826000-25833200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr20:25826000-25833600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr20:25826000-25833800	Weak transcription	Aorta	Aorta
8	chr20:25826000-25833800	Weak transcription	HSMMtube	muscle
9	chr20:25826200-25828800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr20:25826200-25829000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr20:25826200-25829000	Weak transcription	Brain Angular Gyrus	brain
12	chr20:25826200-25829000	Weak transcription	Brain Hippocampus Middle	brain
13	chr20:25826200-25829000	Weak transcription	Esophagus	oesophagus
14	chr20:25826200-25832600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr20:25826200-25833600	Weak transcription	Brain Anterior Caudate	brain
16	chr20:25826200-25833600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr20:25826200-25833600	Weak transcription	Brain Substantia Nigra	brain
18	chr20:25826200-25833600	Weak transcription	Right Ventricle	heart
19	chr20:25827800-25828800	Weak transcription	Dnd41	blood
20	chr20:25828000-25829600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr20:25828400-25833600	Weak transcription	Left Ventricle	heart
22	chr20:25828800-25829200	Strong transcription	Dnd41	blood
23	chr20:25828800-25829400	Strong transcription	Brain Cingulate Gyrus	brain
24	chr20:25828800-25829800	Strong transcription	Brain Inferior Temporal Lobe	brain
25	chr20:25828800-25829800	Strong transcription	Stomach Smooth Muscle	stomach
26	chr20:25828800-25830600	ZNF genes & repeats	Fetal Stomach	stomach
27	chr20:25829000-25829400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr20:25829000-25829400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr20:25829000-25829400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr20:25829000-25829400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
31	chr20:25829000-25829400	ZNF genes & repeats	Brain Germinal Matrix	brain
32	chr20:25829000-25829400	Strong transcription	Brain Hippocampus Middle	brain
33	chr20:25829000-25829400	ZNF genes & repeats	Colonic Mucosa	Colon
34	chr20:25829000-25829400	ZNF genes & repeats	Esophagus	oesophagus
35	chr20:25829000-25829400	ZNF genes & repeats	Fetal Lung	lung
36	chr20:25829000-25829400	ZNF genes & repeats	Gastric	stomach
37	chr20:25829000-25829400	Bivalent Enhancer	Lung	lung
38	chr20:25829000-25829400	ZNF genes & repeats	Ovary	ovary
39	chr20:25829000-25829600	Strong transcription	Brain Angular Gyrus	brain
40	chr20:25829000-25829600	ZNF genes & repeats	Spleen	Spleen
41	chr20:25829200-25829400	ZNF genes & repeats	Dnd41	blood
42	chr20:25829200-25829600	ZNF genes & repeats	Pancreas	Pancrea
43	chr20:25829400-25829800	Enhancers	Lung	lung
44	chr20:25829400-25830800	Weak transcription	Gastric	stomach
45	chr20:25829400-25831800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr20:25829400-25832000	Weak transcription	Dnd41	blood
47	chr20:25829400-25833600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr20:25829400-25833600	Weak transcription	Brain Hippocampus Middle	brain
49	chr20:25829400-25833600	Weak transcription	Colonic Mucosa	Colon
50	chr20:25829400-25833600	Weak transcription	Esophagus	oesophagus

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