Variant report

Variant	nsv965621
Chromosome Location	chr5:120395453-120407469
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRR16-3	chr5:120396085-120396648	NONHSAT103451

Extended variants
information (count: 83 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:83 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528155641	chr5:120396103-120396104	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs546501709	chr5:120396108-120396109	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs192063349	chr5:120396174-120396175	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs532461258	chr5:120396190-120396191	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs550937544	chr5:120396219-120396220	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs73266532	chr5:120396249-120396250	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs536275885	chr5:120396287-120396288	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs554931614	chr5:120396288-120396289	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs372869398	chr5:120396294-120396295	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs143424725	chr5:120396302-120396303	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs375376209	chr5:120396333-120396334	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs534269412	chr5:120396352-120396353	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs41318844	chr5:120396359-120396360	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs576982528	chr5:120396392-120396393	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs10519660	chr5:120396412-120396413	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs556468535	chr5:120396416-120396417	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs575061913	chr5:120396472-120396473	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs73789529	chr5:120396490-120396491	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs563898019	chr5:120396506-120396507	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs369145642	chr5:120396507-120396508	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs560912312	chr5:120396517-120396518	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs148008541	chr5:120396526-120396527	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs41517945	chr5:120396629-120396630	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs569730832	chr5:120399806-120399807	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs530647742	chr5:120399816-120399817	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs549145840	chr5:120399817-120399818	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs567465058	chr5:120399832-120399833	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs184159287	chr5:120399833-120399834	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs553412063	chr5:120399841-120399842	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs142736849	chr5:120399849-120399850	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs527477212	chr5:120399858-120399859	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs539031219	chr5:120399876-120399877	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs188709670	chr5:120399878-120399879	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs575676539	chr5:120399898-120399899	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs370780906	chr5:120399899-120399900	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs547844022	chr5:120399922-120399923	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs547140636	chr5:120399950-120399951	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs542865499	chr5:120399965-120399966	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs555113701	chr5:120399981-120399982	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs539675453	chr5:120399982-120399983	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs112310052	chr5:120399983-120399984	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs370149536	chr5:120399991-120399992	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs192403991	chr5:120400001-120400002	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs184617760	chr5:120400012-120400013	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs376489532	chr5:120400033-120400034	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs7700358	chr5:120400063-120400064	Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs555484704	chr5:120400066-120400067	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs187367295	chr5:120400067-120400068	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs530594390	chr5:120400083-120400084	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs548927136	chr5:120400095-120400096	Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
Colorectal cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Ovarian cancer	21720365	CNVD
Salivary gland tumor	18059337	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	19377443	CNVD
Prostate cancer	16461572	CNVD
Myelofibrosis	22110671	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Glaucoma	21310917	CNVD
Glioblastoma multiforme	22286061	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Renal cell carcinoma	18194544	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:120399800-120400200	Enhancers	H1 Cell Line	embryonic stem cell
2	chr5:120399800-120400400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr5:120399800-120400400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr5:120399800-120400400	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr5:120400000-120400200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:120400000-120400400	Active TSS	H9 Cell Line	embryonic stem cell
7	chr5:120400000-120400400	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr5:120400000-120400400	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr5:120400000-120400400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr5:120400000-120400400	Active TSS	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links