Variant report
Variant | nsv965661 |
---|---|
Chromosome Location | chr6:132863738-132869400 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:18)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:18 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | MAFF | chr6:132866029-132866292 | HepG2 | liver: | n/a | chr6:132866161-132866179 |
2 | MAFF | chr6:132865988-132866282 | K562 | blood: | n/a | chr6:132866161-132866179 |
3 | MAFK | chr6:132866002-132866271 | IMR90 | lung: | n/a | chr6:132866162-132866177 |
4 | MAFK | chr6:132866009-132866324 | HepG2 | liver: | n/a | chr6:132866162-132866177 |
5 | MAFK | chr6:132866011-132866311 | HepG2 | liver: | n/a | chr6:132866162-132866177 |
6 | MAX | chr6:132865472-132865672 | NB4 | blood: | n/a | chr6:132865618-132865628 |
7 | MYC | chr6:132867448-132867476 | MCF10A-Er-Src | breast: | n/a | n/a |
8 | POLR2A | chr6:132864260-132864323 | MCF10A-Er-Src | breast: | n/a | n/a |
9 | POLR2A | chr6:132867358-132867550 | K562 | blood: | n/a | n/a |
10 | SPI1 | chr6:132868876-132869088 | GM12891 | blood: | n/a | chr6:132868969-132868978 chr6:132868973-132868982 |
11 | SPI1 | chr6:132868886-132869035 | GM12878 | blood: | n/a | chr6:132868969-132868978 chr6:132868973-132868982 |
12 | SPI1 | chr6:132868784-132869069 | GM12878 | blood: | n/a | chr6:132868969-132868978 chr6:132868973-132868982 |
13 | SPI1 | chr6:132868752-132869108 | GM12891 | blood: | n/a | chr6:132868969-132868978 chr6:132868973-132868982 |
14 | SPI1 | chr6:132868611-132869289 | GM12878 | blood: | n/a | chr6:132868969-132868978 chr6:132868973-132868982 |
15 | STAT3 | chr6:132863770-132863997 | MCF10A-Er-Src | breast: | n/a | n/a |
16 | STAT3 | chr6:132866184-132866359 | MCF10A-Er-Src | breast: | n/a | n/a |
17 | USF2 | chr6:132865590-132865643 | GM12878 | blood: | n/a | n/a |
18 | USF2 | chr6:132865636-132865643 | HepG2 | liver: | n/a | n/a |
No data |
(count:3 , 50 per page) page:
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No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
TAAR8 | TF binding region |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs2840831 | chr6:132866240-132866241 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs548516389 | chr6:132866261-132866262 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs149665031 | chr6:132866295-132866296 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs141195225 | chr6:132866315-132866316 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs570011905 | chr6:132866322-132866323 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs376005563 | chr6:132866333-132866334 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs536057956 | chr6:132866335-132866336 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs556042855 | chr6:132866368-132866369 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs572665523 | chr6:132866369-132866370 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs181324673 | chr6:132866389-132866390 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs558146843 | chr6:132866411-132866412 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs112495079 | chr6:132866420-132866421 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs545451339 | chr6:132866442-132866443 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs562614644 | chr6:132866477-132866478 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs576385337 | chr6:132866478-132866479 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs80035067 | chr6:132866494-132866495 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs148425733 | chr6:132866496-132866497 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs561578960 | chr6:132866514-132866515 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs117864048 | chr6:132866528-132866529 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs547308491 | chr6:132866577-132866578 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs142632991 | chr6:132866619-132866620 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs146478832 | chr6:132866647-132866648 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs185600220 | chr6:132866688-132866689 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs570029440 | chr6:132866692-132866693 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs535993043 | chr6:132866699-132866700 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs34917209 | chr6:132866713-132866714 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs549484480 | chr6:132866714-132866715 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs75449156 | chr6:132866732-132866733 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs376624566 | chr6:132866825-132866826 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs368678786 | chr6:132866940-132866941 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs535202565 | chr6:132866950-132866951 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs558441917 | chr6:132867026-132867027 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs376252755 | chr6:132867105-132867106 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs570411971 | chr6:132867122-132867123 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs36117975 | chr6:132867128-132867129 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs539424339 | chr6:132867173-132867174 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs555935140 | chr6:132867180-132867181 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs2840832 | chr6:132867198-132867199 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
39 | rs541551888 | chr6:132867202-132867203 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs189621101 | chr6:132867306-132867307 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs571922925 | chr6:132867338-132867339 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs182347174 | chr6:132867359-132867360 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs564408376 | chr6:132867376-132867377 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs533121372 | chr6:132867424-132867425 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs550039669 | chr6:132867431-132867432 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs141132568 | chr6:132867438-132867439 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs529284297 | chr6:132867462-132867463 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs2788937 | chr6:132867495-132867496 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
49 | rs566144692 | chr6:132867526-132867527 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs28668540 | chr6:132867535-132867536 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Uveal melanoma | 21693616 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Biliary cancer | 19435499 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Malaria | 21533027 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Autism | 21448237 | CNVD |
Autism | 22495311 | CNVD |
Biliary cancer | 20360734 | CNVD |
Breast cancer | 20360734 | CNVD |
Coronary artery disease | 20360734 | CNVD |
Crohn''s disease | 20360734 | CNVD |
Hypertension | 20360734 | CNVD |
Rheumatoid arthritis | 20360734 | CNVD |
Type 1 diabetes | 20360734 | CNVD |
Type 2 diabetes | 20360734 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Melanoma | 18172304 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Gastric cancer | 17908304 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Follicular lymphoma | 19010834 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Breast cancer | 16608533 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Prostate cancer | 16705090 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Ependymoma | 16718352 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Intracranial tumor | 16823260 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 16272173 | CNVD |
Prostate cancer | 18632612 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Glioma | 21046410 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Zellweger syndrome | 21572526 | CNVD |
Follicular lymphoma | 20505157 | CNVD |
Congenital diaphragmatic hernia | 21085971 | CNVD |
Malignant melanoma | 18718029 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21858162 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Breast cancer | 17603634 | CNVD |
Chondromyxoid Fibroma | 20696777 | CNVD |
Cancer | 21183584 | CNVD |
Developmental delay | 19490664 | CNVD |
Non-muscle invasive bladder neoplasm | 19445696 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Breast cancer | 21785460 | CNVD |
Kartagener syndrome | 16639409 | CNVD |
Breast cancer | 17133270 | CNVD |
Follicular lymphoma | 18703704 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Leukemia | 18688285 | CNVD |
Breast cancer | 21364760 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Renal cell carcinoma | 18592004 | CNVD |
Breast cancer | 22522925 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:132866200-132869800 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
2 | chr6:132869400-132870600 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |