Variant report
Variant | nsv965741 |
---|---|
Chromosome Location | chr6:80662518-80663704 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs141147925 | chr6:80662525-80662526 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs368259388 | chr6:80662530-80662531 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs535063886 | chr6:80662537-80662538 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs571719762 | chr6:80662557-80662558 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs554855991 | chr6:80662568-80662569 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs559626795 | chr6:80662575-80662576 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs77575806 | chr6:80662587-80662588 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs74522594 | chr6:80662596-80662597 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs550430197 | chr6:80662611-80662612 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
10 | rs530970967 | chr6:80662629-80662630 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
11 | rs146947658 | chr6:80662645-80662646 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
12 | rs550309364 | chr6:80662665-80662666 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
13 | rs566917023 | chr6:80662667-80662668 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
14 | rs535881046 | chr6:80662668-80662669 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
15 | rs138046677 | chr6:80662746-80662747 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
16 | rs573446641 | chr6:80662749-80662750 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
17 | rs183445041 | chr6:80662803-80662804 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs559059504 | chr6:80662818-80662819 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs373885583 | chr6:80662840-80662841 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs575793773 | chr6:80662848-80662849 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs373856664 | chr6:80662878-80662879 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs143968845 | chr6:80662915-80662916 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs188026758 | chr6:80662921-80662922 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs574863325 | chr6:80662931-80662932 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs540604677 | chr6:80663025-80663026 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
26 | rs560301260 | chr6:80663029-80663030 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
27 | rs150679008 | chr6:80663052-80663053 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
28 | rs551390424 | chr6:80663053-80663054 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
29 | rs138939054 | chr6:80663055-80663056 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
30 | rs149420002 | chr6:80663058-80663059 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
31 | rs550249659 | chr6:80663067-80663068 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
32 | rs193061161 | chr6:80663083-80663084 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
33 | rs552683763 | chr6:80663093-80663094 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
34 | rs535954818 | chr6:80663101-80663102 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
35 | rs546532703 | chr6:80663107-80663108 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
36 | rs566345974 | chr6:80663110-80663111 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
37 | rs62407623 | chr6:80663140-80663141 | Weak transcription ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
38 | rs239535 | chr6:80663159-80663160 | Weak transcription ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
39 | rs144841650 | chr6:80663183-80663184 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
40 | rs185344260 | chr6:80663190-80663191 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
41 | rs188219550 | chr6:80663191-80663192 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
42 | rs192727100 | chr6:80663258-80663259 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs540740594 | chr6:80663274-80663275 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs554090509 | chr6:80663280-80663281 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs577216282 | chr6:80663284-80663285 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs239536 | chr6:80663309-80663310 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
47 | rs565069744 | chr6:80663312-80663313 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs530600641 | chr6:80663313-80663314 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs564796741 | chr6:80663318-80663319 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs371042247 | chr6:80663320-80663321 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Uveal melanoma | 21693616 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Biliary cancer | 19435499 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Malaria | 21533027 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Autism | 21448237 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Autism | 22495311 | CNVD |
Gastric cancer | 17908304 | CNVD |
Biliary cancer | 20360734 | CNVD |
Breast cancer | 20360734 | CNVD |
Coronary artery disease | 20360734 | CNVD |
Crohn''s disease | 20360734 | CNVD |
Hypertension | 20360734 | CNVD |
Rheumatoid arthritis | 20360734 | CNVD |
Type 1 diabetes | 20360734 | CNVD |
Type 2 diabetes | 20360734 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 17603634 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Systemic lupus erythematosus | 17503323 | CNVD |
Melanoma | 18172304 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Acute lymphoblastic leukemia | 17443227 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Follicular lymphoma | 19010834 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Breast cancer | 16608533 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Prostate cancer | 16705090 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Ependymoma | 16718352 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Intracranial tumor | 16823260 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Prostate cancer | 16573809 | CNVD |
Breast cancer | 16272173 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Prostate cancer | 18632612 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Diffuse large b-cell lymphoma | 18287131 | CNVD |
Urothelial carcinoma | 18382360 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Follicular lymphoma | 17699855 | CNVD |
Breast cancer | 17133270 | CNVD |
Leukemia | 18688285 | CNVD |
Prostate cancer | 19242612 | CNVD |
Developmental delay | 21147756 | CNVD |
Glioma | 21046410 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Zellweger syndrome | 21572526 | CNVD |
Follicular lymphoma | 20505157 | CNVD |
Congenital diaphragmatic hernia | 21085971 | CNVD |
Malignant melanoma | 18718029 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Lung adenocarcinoma | 21935476 | CNVD |
Breast cancer | 21364760 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Salivary gland tumor | 18059337 | CNVD |
Lung cancer | 16773561 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Urothelial cell carcinoma | 18451213 | CNVD |
Prostate cancer | 16461572 | CNVD |
Mental retardation | 21045960 | CNVD |
Obesity | 21045960 | CNVD |
learning difficulties | 21045960 | CNVD |
Prostate cancer | 17245344 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Cancer | 20164920 | CNVD |
Burkitt''s lymphoma | 20823134 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 18458336 | CNVD |
Acute lymphoblastic leukemia | 17640729 | CNVD |
Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Cancer | 20164919 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:80658000-80664200 | Weak transcription | Primary T helper naive cells from peripheral blood | blood |
2 | chr6:80659400-80664600 | Weak transcription | Gastric | stomach |
3 | chr6:80662200-80662600 | Weak transcription | Fetal Thymus | thymus |
4 | chr6:80662200-80663000 | Weak transcription | Thymus | Thymus |
5 | chr6:80662600-80662800 | ZNF genes & repeats | Fetal Thymus | thymus |
6 | chr6:80663000-80663200 | ZNF genes & repeats | Thymus | Thymus |
7 | chr6:80663200-80664800 | Weak transcription | Thymus | Thymus |