Variant report

Variant	nsv965866
Chromosome Location	chr20:26156669-26174941
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:22)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:116)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:22 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr20:26165904-26165959	GM13976	blood:	n/a	n/a
2	CTCF	chr20:26168041-26168087	Kidney_OC	kidney:	n/a	n/a
3	CTCF	chr20:26173544-26173604	Kidney_OC	kidney:	n/a	n/a
4	CTCF	chr20:26172863-26172893	Spleen_OC	spleen:	n/a	n/a
5	CTCF	chr20:26168890-26168933	Kidney_OC	kidney:	n/a	n/a
6	CTCF	chr20:26160816-26160832	GM13977	blood:	n/a	n/a
7	CTCF	chr20:26174045-26174093	LNCaP	prostate:	n/a	n/a
8	MAFF	chr20:26164441-26164700	HepG2	liver:	n/a	chr20:26164543-26164557 chr20:26164544-26164562
9	MAFK	chr20:26164427-26164696	HepG2	liver:	n/a	chr20:26164543-26164557 chr20:26164542-26164558 chr20:26164539-26164554 chr20:26164540-26164560
10	MAFK	chr20:26164366-26164714	HepG2	liver:	n/a	chr20:26164543-26164557 chr20:26164542-26164558 chr20:26164539-26164554 chr20:26164540-26164560
11	MAFK	chr20:26164513-26164595	K562	blood:	n/a	chr20:26164543-26164557 chr20:26164542-26164558 chr20:26164539-26164554 chr20:26164540-26164560
12	MAFK	chr20:26164466-26164691	IMR90	lung:	n/a	chr20:26164543-26164557 chr20:26164542-26164558 chr20:26164539-26164554 chr20:26164540-26164560
13	POLR2A	chr20:26173687-26173699	Gliobla	brain:	n/a	n/a
14	POLR2A	chr20:26173620-26173639	ProgFib	skin:	n/a	n/a
15	POLR2A	chr20:26173628-26173686	Gliobla	brain:	n/a	n/a
16	POLR2A	chr20:26163313-26163353	A549	lung:	n/a	n/a
17	POLR2A	chr20:26172800-26172839	H1-hESC	embryonic stem cell:	n/a	n/a
18	SPI1	chr20:26167882-26168382	GM12891	blood:	n/a	n/a
19	SPI1	chr20:26167759-26168537	GM12878	blood:	n/a	n/a
20	SPI1	chr20:26167988-26168338	GM12878	blood:	n/a	n/a
21	SPI1	chr20:26167893-26168332	GM12891	blood:	n/a	n/a
22	SPI1	chr20:26168069-26168200	GM12878	blood:	n/a	n/a

No data

(count:116 , 50 per page) page: 1 2 3

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195
2	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
3	lnc-FAM182B-6	chr20:26168268-26168473	ENSG00000227195.4
4	lnc-FAM182B-5	chr20:26160090-26160098	XLOC_013714
5	lnc-FAM182B-6	chr20:26172307-26172399	ENSG00000227195.4
6	lnc-FAM182B-6	chr20:26168268-26168473	ENSG00000227195.4
7	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
8	lnc-FAM182B-6	chr20:26174934-26175080	ENSG00000227195.4
9	lnc-FAM182B-6	chr20:26168268-26168473	ENSG00000227195.4
10	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
11	lnc-FAM182B-6	chr20:26172769-26173473	ENSG00000227195.4
12	lnc-FAM182B-6	chr20:26174934-26175080	ENSG00000227195.4
13	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
14	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
15	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
16	lnc-FAM182B-6	chr20:26172307-26172399	ENSG00000227195.4
17	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
18	lnc-FAM182B-6	chr20:26167655-26168473	ENSG00000227195
19	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
20	lnc-FAM182A-2	chr20:26174024-26174582	XLOC_013504
21	lnc-FAM182B-6	chr20:26168346-26168473	ENSG00000227195.4
22	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
23	lnc-FAM182B-6	chr20:26168389-26168714	ENSG00000227195.4
24	lnc-FAM182B-6	chr20:26168268-26168473	ENSG00000227195.4
25	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
26	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
27	lnc-FAM182B-6	chr20:26168268-26168473	ENSG00000227195.4
28	lnc-FAM182B-6	chr20:26167632-26168219	XLOC_013715
29	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
30	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
31	lnc-FAM182B-6	chr20:26172450-26172536	ENSG00000227195.4
32	lnc-FAM182B-6	chr20:26174934-26175080	ENSG00000227195.4
33	lnc-FAM182B-6	chr20:26174934-26174953	XLOC_013715
34	lnc-FAM182B-6	chr20:26172769-26172868	XLOC_013715
35	lnc-FAM182B-6	chr20:26168346-26168473	ENSG00000227195.4
36	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
37	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
38	lnc-FAM182B-6	chr20:26174934-26175080	ENSG00000227195.4
39	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
40	lnc-FAM182B-6	chr20:26174934-26175080	ENSG00000227195.4
41	lnc-FAM182B-6	chr20:26172429-26172536	ENSG00000227195.4
42	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
43	lnc-FAM182B-6	chr20:26172429-26172497	ENSG00000227195.4
44	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
45	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
46	lnc-FAM182B-6	chr20:26172769-26172868	ENSG00000227195.4
47	lnc-FAM182B-6	chr20:26167556-26168177	ENSG00000227195.4
48	lnc-FAM182B-6	chr20:26168460-26168735	ENSG00000227195.4
49	lnc-FAM182B-6	chr20:26167655-26168473	ENSG00000227195
50	lnc-FAM182B-6	chr20:26168346-26168473	ENSG00000227195.4

No data

Variant related genes	Relation type
ENSG00000238129	TF binding region
MIR663A	TF binding region
SLC16A1	miRNA target sites
NXT2	miRNA target sites

Extended variants
information (count: 134 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:134 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567211217	chr20:26157267-26157268	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs577439829	chr20:26157281-26157282	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs2752932	chr20:26157336-26157337	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs562833730	chr20:26157382-26157383	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs193246537	chr20:26157414-26157415	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs548701389	chr20:26157448-26157449	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs577607541	chr20:26157453-26157454	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs183054654	chr20:26157482-26157483	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs374640939	chr20:26157515-26157516	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs151103174	chr20:26157603-26157604	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs187383696	chr20:26157637-26157638	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs6132932	chr20:26157678-26157679	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs6132933	chr20:26157709-26157710	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs570678410	chr20:26157710-26157711	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs549636284	chr20:26160092-26160093	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs185065512	chr20:26167636-26167637	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs549403357	chr20:26167658-26167659	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs151014030	chr20:26167709-26167710	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs535153334	chr20:26167716-26167717	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs557808393	chr20:26167719-26167720	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs369943723	chr20:26167731-26167732	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs571376351	chr20:26167739-26167740	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs140808081	chr20:26167754-26167755	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs549863546	chr20:26167774-26167775	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
25	rs187963780	chr20:26167807-26167808	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
26	rs145962474	chr20:26167808-26167809	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
27	rs41309914	chr20:26167857-26167858	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
28	rs552975516	chr20:26167936-26167937	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
29	rs139137552	chr20:26167944-26167945	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
30	rs845779	chr20:26167980-26167981	Inactive region	TF binding region lncRNA	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs114269653	chr20:26167991-26167992	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
32	rs143147261	chr20:26167999-26168000	Inactive region	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
33	rs147030843	chr20:26168005-26168006	Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
34	rs563726893	chr20:26168028-26168029	Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
35	rs187031330	chr20:26168040-26168041	Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
36	rs191959002	chr20:26168091-26168092	Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
37	rs566092871	chr20:26168108-26168109	Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
38	rs7343618	chr20:26168110-26168111	Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
39	rs532106979	chr20:26168117-26168118	Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
40	rs183329276	chr20:26168125-26168126	Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
41	rs138127588	chr20:26168162-26168163	Active TSS	TF binding region lncRNA	1 gene(s)	Overlapped CNVs	n/a
42	rs571414676	chr20:26168183-26168184	Active TSS	TF binding region lncRNA	2 gene(s)	Overlapped CNVs	n/a
43	rs537100053	chr20:26168184-26168185	Active TSS	TF binding region lncRNA	2 gene(s)	Overlapped CNVs	n/a
44	rs557168544	chr20:26168219-26168220	Active TSS	TF binding region lncRNA	2 gene(s)	Overlapped CNVs	n/a
45	rs567341821	chr20:26168226-26168227	Active TSS	TF binding region lncRNA	2 gene(s)	Overlapped CNVs	n/a
46	rs149566780	chr20:26168254-26168255	Active TSS	TF binding region lncRNA	2 gene(s)	Overlapped CNVs	n/a
47	rs552974266	chr20:26168362-26168363	Active TSS	TF binding region lncRNA	2 gene(s)	Overlapped CNVs	n/a
48	rs573064957	chr20:26168369-26168370	Active TSS	TF binding region lncRNA	2 gene(s)	Overlapped CNVs	n/a
49	rs185843983	chr20:26168391-26168392	Active TSS	TF binding region lncRNA	2 gene(s)	Overlapped CNVs	n/a
50	rs558548098	chr20:26168394-26168395	Active TSS	TF binding region lncRNA	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:26168000-26168400	Active TSS	Pancreatic Islets	Pancreatic Islet

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