Variant report

Variant	nsv966374
Chromosome Location	chr4:120383804-120385016
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC110373.1-8	chr4:120384051-120384134	NONHSAT098079
2	lnc-AC110373.1-8	chr4:120384051-120384134	NONHSAT098082
3	lnc-AC110373.1-8	chr4:120384051-120384134	NONHSAT098081

Extended variants
information (count: 52 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:52 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs556662059	chr4:120383828-120383829	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs541455713	chr4:120383875-120383876	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs576498092	chr4:120383880-120383881	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs545477255	chr4:120383906-120383907	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs559549609	chr4:120383910-120383911	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs4102980	chr4:120383987-120383988	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs77227659	chr4:120384019-120384020	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs200477985	chr4:120384020-120384021	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs79403175	chr4:120384021-120384022	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs77738904	chr4:120384036-120384037	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs1842519	chr4:120384043-120384044	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs542551728	chr4:120384046-120384047	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs573037111	chr4:120384047-120384048	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs530936502	chr4:120384157-120384158	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs114224402	chr4:120384160-120384161	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs564586565	chr4:120384164-120384165	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs533497567	chr4:120384170-120384171	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs386678955	chr4:120384177-120384178	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs28665282	chr4:120384186-120384187	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs10026493	chr4:120384194-120384195	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs534507851	chr4:120384205-120384206	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs10026516	chr4:120384253-120384254	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs568238580	chr4:120384269-120384270	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs536666764	chr4:120384275-120384276	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs556576820	chr4:120384276-120384277	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs191069498	chr4:120384296-120384297	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs539194070	chr4:120384317-120384318	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs552784446	chr4:120384319-120384320	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs10026736	chr4:120384322-120384323	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs564536367	chr4:120384333-120384334	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs149805872	chr4:120384345-120384346	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs10026748	chr4:120384357-120384358	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
33	rs371790837	chr4:120384365-120384366	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs578087720	chr4:120384427-120384428	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs10004144	chr4:120384431-120384432	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs564497303	chr4:120384471-120384472	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs533358984	chr4:120384486-120384487	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs547154747	chr4:120384511-120384512	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs10026952	chr4:120384564-120384565	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs529554356	chr4:120384631-120384632	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs549603487	chr4:120384664-120384665	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs568233858	chr4:120384684-120384685	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs536977927	chr4:120384692-120384693	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs550458927	chr4:120384720-120384721	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs570154054	chr4:120384765-120384766	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs539007506	chr4:120384773-120384774	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs553034814	chr4:120384800-120384801	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs7688613	chr4:120384803-120384804	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
49	rs536060659	chr4:120384827-120384828	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs531754574	chr4:120384836-120384837	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	21183584	CNVD
primary effusion lymphomas	17116491	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Colorectal cancer	20459617	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Breast cancer	17393978	CNVD
Esophageal cancer	21851588	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	16272173	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Neuroblastoma	21899760	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Cancer	20164919	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Amyotrophic lateral sclerosis	20685689	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:134 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120376400-120392400	Weak transcription	Fetal Lung	lung
2	chr4:120376400-120471600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:120376600-120397200	Weak transcription	Aorta	Aorta
4	chr4:120376600-120399000	Weak transcription	Stomach Mucosa	stomach
5	chr4:120376600-120401200	Weak transcription	Psoas Muscle	Psoas
6	chr4:120376600-120419200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:120377000-120388600	Weak transcription	Primary T cells from cord blood	blood
8	chr4:120377000-120416000	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:120377200-120388800	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:120377200-120392400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:120377200-120393200	Weak transcription	Primary B cells from cord blood	blood
12	chr4:120377200-120397400	Weak transcription	Lung	lung
13	chr4:120377200-120400000	Weak transcription	Esophagus	oesophagus
14	chr4:120377200-120400600	Weak transcription	A549	lung
15	chr4:120377200-120401000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:120377200-120403400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:120377200-120415600	Weak transcription	Brain Substantia Nigra	brain
18	chr4:120377200-120416200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr4:120377200-120419600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr4:120377200-120433800	Weak transcription	Gastric	stomach
21	chr4:120377400-120384200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr4:120377400-120384200	Weak transcription	HUVEC	blood vessel
23	chr4:120377400-120385200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr4:120377400-120385200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr4:120377400-120385200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr4:120377400-120385200	Weak transcription	Fetal Kidney	kidney
27	chr4:120377400-120385200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr4:120377400-120385200	Weak transcription	Left Ventricle	heart
29	chr4:120377400-120386600	Weak transcription	Fetal Stomach	stomach
30	chr4:120377400-120386800	Weak transcription	Fetal Muscle Leg	muscle
31	chr4:120377400-120389400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr4:120377400-120390200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr4:120377400-120391400	Weak transcription	NH-A	brain
34	chr4:120377400-120391800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr4:120377400-120392200	Weak transcription	Fetal Intestine Large	intestine
36	chr4:120377400-120392400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr4:120377400-120393200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr4:120377400-120393400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr4:120377400-120395000	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr4:120377400-120396400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr4:120377400-120397400	Weak transcription	Thymus	Thymus
42	chr4:120377400-120397400	Weak transcription	Hela-S3	cervix
43	chr4:120377400-120397800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr4:120377400-120398400	Weak transcription	Fetal Intestine Small	intestine
45	chr4:120377400-120399800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr4:120377400-120400200	Weak transcription	Ovary	ovary
47	chr4:120377400-120400400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr4:120377400-120400600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr4:120377400-120400600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr4:120377400-120401000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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