Variant report

Variant	nsv969944
Chromosome Location	chr5:120695465-120704952
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FTMT-3	chr5:120698697-120701009	NONHSAT103459

Extended variants
information (count: 172 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:172 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs553590265	chr5:120698699-120698700	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs74835670	chr5:120698700-120698701	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs188729889	chr5:120698716-120698717	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs563773071	chr5:120698769-120698770	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs56190774	chr5:120698779-120698780	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs75053248	chr5:120698796-120698797	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs529096784	chr5:120698810-120698811	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs7704634	chr5:120698819-120698820	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs561885078	chr5:120698821-120698822	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs78867895	chr5:120698838-120698839	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs565899818	chr5:120698854-120698855	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs192851274	chr5:120698855-120698856	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs372721600	chr5:120698871-120698872	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs559587266	chr5:120698876-120698877	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs185003444	chr5:120698888-120698889	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs142132025	chr5:120698918-120698919	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs570090345	chr5:120698946-120698947	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs189512598	chr5:120699008-120699009	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs181002474	chr5:120699040-120699041	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs146406594	chr5:120699041-120699042	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs534904797	chr5:120699046-120699047	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs79264445	chr5:120699065-120699066	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs795172	chr5:120699089-120699090	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs75678829	chr5:120699100-120699101	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs138465003	chr5:120699112-120699113	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs543271227	chr5:120699117-120699118	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs555376033	chr5:120699149-120699150	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs573923371	chr5:120699187-120699188	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs142797926	chr5:120699219-120699220	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs559530649	chr5:120699239-120699240	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs114163852	chr5:120699252-120699253	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs545535996	chr5:120699267-120699268	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs563635810	chr5:120699304-120699305	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs813829	chr5:120699328-120699329	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs113734971	chr5:120699349-120699350	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs62382591	chr5:120699350-120699351	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs567855200	chr5:120699432-120699433	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs144216914	chr5:120699461-120699462	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs148750057	chr5:120699471-120699472	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs534797860	chr5:120699476-120699477	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs370761088	chr5:120699483-120699484	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs546994521	chr5:120699488-120699489	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs35646180	chr5:120699557-120699558	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs142302615	chr5:120699580-120699581	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs150774839	chr5:120699608-120699609	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs546312793	chr5:120699612-120699613	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs557439165	chr5:120699613-120699614	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs535675117	chr5:120699621-120699622	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs114310317	chr5:120699622-120699623	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs536644496	chr5:120699642-120699643	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
Colorectal cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Ovarian cancer	21720365	CNVD
Salivary gland tumor	18059337	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	19377443	CNVD
Prostate cancer	16461572	CNVD
Myelofibrosis	22110671	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Glaucoma	21310917	CNVD
Glioblastoma multiforme	22286061	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Renal cell carcinoma	18194544	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:120701800-120702400	Enhancers	HMEC	breast
2	chr5:120701800-120702600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:120701800-120702800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:120702000-120702400	Enhancers	A549	lung
5	chr5:120702000-120702400	Enhancers	Hela-S3	cervix
6	chr5:120702000-120702800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:120702200-120702600	Enhancers	NHDF-Ad	bronchial

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