Variant report

Variant	nsv970937
Chromosome Location	chr7:124985881-124986592
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPAM1-9	chr7:124985879-124986251	NONHSAT123107

Extended variants
information (count: 27 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs62482062	chr7:124985892-124985893	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
2	rs182324160	chr7:124985897-124985898	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs1427578	chr7:124985906-124985907	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs141612158	chr7:124985911-124985912	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs186252521	chr7:124985916-124985917	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs191006008	chr7:124985920-124985921	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
7	rs182844611	chr7:124985923-124985924	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
8	rs566424617	chr7:124985969-124985970	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
9	rs146223861	chr7:124985982-124985983	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
10	rs1427577	chr7:124985986-124985987	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs80197112	chr7:124985991-124985992	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
12	rs551349015	chr7:124985993-124985994	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs558132134	chr7:124986017-124986018	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs557583111	chr7:124986075-124986076	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
15	rs574184515	chr7:124986085-124986086	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
16	rs188536440	chr7:124986125-124986126	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
17	rs576489596	chr7:124986132-124986133	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
18	rs147978667	chr7:124986168-124986169	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
19	rs545053480	chr7:124986221-124986222	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
20	rs564870254	chr7:124986229-124986230	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
21	rs73719384	chr7:124986250-124986251	Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs544051477	chr7:124986263-124986264	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs80133326	chr7:124986304-124986305	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs373871539	chr7:124986346-124986347	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs529751495	chr7:124986360-124986361	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs192948013	chr7:124986371-124986372	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs58154528	chr7:124986395-124986396	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19401682	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
Hepatocellular carcinoma	16785998	CNVD
Glioblastoma multiforme	18628472	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21509527	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	21635232	CNVD
Squamous cell cancer	20885788	CNVD
Myelofibrosis	22110671	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Autism	20858243	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124985800-124986400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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