Variant report

Variant	nsv971543
Chromosome Location	chr7:126653280-126657192
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:126651745-126656082..7:126890676-126899918	H1-hESC	embryonic stem cell:	embryo
2	7:126651745-126656082..7:126756671-126761022	H1-hESC	embryonic stem cell:	embryo

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARF5-15	chr7:126655663-126657210	ucscGeneNc_uc003vlv_2

Variant related genes	Relation type
ENSG00000179603	chromatin interactions

Extended variants
information (count: 161 )
Associated
traits (count: 94 )

Variant overlapped rSNPs/rCNVs (count:161 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs114301111	chr7:126653308-126653309	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs561862619	chr7:126653379-126653380	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs371676378	chr7:126653390-126653391	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs529305462	chr7:126653403-126653404	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs142226193	chr7:126653404-126653405	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs568906916	chr7:126653405-126653406	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs556490359	chr7:126653441-126653442	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs533718714	chr7:126653451-126653452	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs11563791	chr7:126653475-126653476	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs567127173	chr7:126653499-126653500	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs569048736	chr7:126653571-126653572	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs56183037	chr7:126653603-126653604	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs534148538	chr7:126653637-126653638	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs12673312	chr7:126653699-126653700	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs17869897	chr7:126653723-126653724	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs17865614	chr7:126653772-126653773	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs55795036	chr7:126653781-126653782	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs535541672	chr7:126653792-126653793	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs6954791	chr7:126653798-126653799	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs575115890	chr7:126653856-126653857	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs13240656	chr7:126653862-126653863	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs17867412	chr7:126653886-126653887	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs546106104	chr7:126653888-126653889	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs189647232	chr7:126653895-126653896	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs17866527	chr7:126653897-126653898	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs13228064	chr7:126653915-126653916	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs13240766	chr7:126653963-126653964	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs17865606	chr7:126653970-126653971	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs17866526	chr7:126653980-126653981	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs181774267	chr7:126654030-126654031	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs11563510	chr7:126654051-126654052	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs540047172	chr7:126654063-126654064	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs561496546	chr7:126654096-126654097	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs146374986	chr7:126654122-126654123	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs544288993	chr7:126654139-126654140	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs17867391	chr7:126654153-126654154	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs186130292	chr7:126654181-126654182	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs191700888	chr7:126654258-126654259	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs533194936	chr7:126654284-126654285	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs551721338	chr7:126654293-126654294	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs566028950	chr7:126654312-126654313	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs138429166	chr7:126654313-126654314	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs181353688	chr7:126654318-126654319	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs17868673	chr7:126654350-126654351	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs567851785	chr7:126654355-126654356	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs1419440	chr7:126654356-126654357	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs1419441	chr7:126654389-126654390	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs539374728	chr7:126654415-126654416	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs555393468	chr7:126654524-126654525	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs142928354	chr7:126654575-126654576	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:94)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19401682	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
Hepatocellular carcinoma	16785998	CNVD
Glioblastoma multiforme	18628472	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21509527	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Squamous cell cancer	20885788	CNVD
Myelofibrosis	22110671	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Autism	20808228	CNVD
Cancer	20164919	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Prostate cancer	22341455	CNVD
Malignant melanoma	17260012	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links