Variant report

Variant	nsv972198
Chromosome Location	chr8:58671349-58678664
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58676816..58679617-chr8:58680100..58681928,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs559309561	chr8:58671421-58671422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs184313388	chr8:58671427-58671428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs551452296	chr8:58671454-58671455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs571392606	chr8:58671495-58671496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs10090263	chr8:58671521-58671522	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs188663382	chr8:58671522-58671523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs146785489	chr8:58671530-58671531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs116916595	chr8:58671552-58671553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs555437673	chr8:58671564-58671565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs139528648	chr8:58671573-58671574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs76125496	chr8:58671593-58671594	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs114293050	chr8:58671602-58671603	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs558210884	chr8:58671605-58671606	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs114646234	chr8:58671661-58671662	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs536815917	chr8:58671689-58671690	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs556760096	chr8:58671690-58671691	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs113699968	chr8:58671693-58671694	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs184412299	chr8:58671740-58671741	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs142853950	chr8:58671760-58671761	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs572774389	chr8:58671786-58671787	Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs544711090	chr8:58671817-58671818	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs564937989	chr8:58671830-58671831	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs375432232	chr8:58671839-58671840	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs550348552	chr8:58671882-58671883	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs563884397	chr8:58671891-58671892	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs529506780	chr8:58671914-58671915	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs151069778	chr8:58671958-58671959	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs115217558	chr8:58671985-58671986	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs530414123	chr8:58672015-58672016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs551379026	chr8:58672016-58672017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs112566180	chr8:58672081-58672082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs556610148	chr8:58672104-58672105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs577247350	chr8:58672159-58672160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs571380077	chr8:58672196-58672197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Colorectal cancer	21645411	CNVD
Melanoma	22183965	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58671400-58671600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:58671600-58671800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:58671600-58672000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:58671600-58672000	Enhancers	Gastric	stomach
5	chr8:58671800-58672000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:58672000-58672200	Weak transcription	Gastric	stomach

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