Variant report

Variant	nsv972464
Chromosome Location	chr9:140975860-141018237
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:140949053..140949565-chr9:140995304..140996092,3	MCF-7	breast:
2	chr9:137024514..137025058-chr9:141013083..141013583,2	HCT-116	colon:
3	chr9:141007252..141009770-chr9:141014340..141016354,2	MCF-7	breast:
4	chr9:140991128..140993433-chr9:140998381..141000455,2	K562	blood:
5	chr9:141011439..141013713-chr9:141015634..141018380,2	K562	blood:
6	chr9:140955941..140956581-chr9:140995170..140996036,2	MCF-7	breast:
7	chr9:141007252..141009770-chr9:141014340..141016354,2	MCF-7	breast:
8	chr9:140955879..140956683-chr9:140995540..140996190,2	MCF-7	breast:
9	chr9:141011439..141013713-chr9:141015634..141018380,2	K562	blood:
10	chr9:140991128..140993433-chr9:140998381..141000455,2	K562	blood:
11	chr9:140969366..140972281-chr9:140974102..140976549,3	MCF-7	breast:
12	chr9:140963638..140966246-chr9:140975970..140978505,2	MCF-7	breast:
13	chr9:140948638..140949637-chr9:141008065..141008656,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148408	chromatin interactions

Extended variants
information (count: 2177 )
Associated
traits (count: 19 )

Variant overlapped rSNPs/rCNVs (count:2177 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs145730417	chr9:140975860-140975861	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs544848241	chr9:140975903-140975904	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs187686122	chr9:140975943-140975944	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs561425853	chr9:140976034-140976035	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs530471989	chr9:140976046-140976047	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs148924974	chr9:140976103-140976104	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs529770523	chr9:140976109-140976110	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs546723164	chr9:140976129-140976130	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs560512800	chr9:140976173-140976174	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs532776754	chr9:140976179-140976180	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs192247743	chr9:140976186-140976187	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs569180063	chr9:140976224-140976225	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs184227863	chr9:140976232-140976233	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs73575863	chr9:140976238-140976239	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs568965073	chr9:140976240-140976241	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs568116490	chr9:140976275-140976276	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs117384739	chr9:140976332-140976333	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs188621996	chr9:140976340-140976341	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs181089945	chr9:140976381-140976382	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs532626688	chr9:140976471-140976472	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs552725483	chr9:140976483-140976484	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs538853457	chr9:140976496-140976497	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs4876924	chr9:140976498-140976499	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs62580950	chr9:140976533-140976534	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs184380423	chr9:140976640-140976641	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs537863336	chr9:140976690-140976691	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs554604091	chr9:140976777-140976778	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs574415793	chr9:140976782-140976783	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs539937535	chr9:140976818-140976819	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs560222544	chr9:140976856-140976857	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs113396276	chr9:140976857-140976858	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs143201704	chr9:140976898-140976899	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs35556139	chr9:140976929-140976930	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs562752046	chr9:140976930-140976931	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs531838444	chr9:140976968-140976969	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs138953527	chr9:140977009-140977010	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs568103987	chr9:140977022-140977023	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs372878063	chr9:140977106-140977107	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs527717017	chr9:140977176-140977177	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs376376021	chr9:140977186-140977187	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs570893437	chr9:140977201-140977202	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs539562831	chr9:140977214-140977215	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs558740897	chr9:140977224-140977225	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs569123004	chr9:140977237-140977238	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs141405423	chr9:140977347-140977348	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs554938871	chr9:140977386-140977387	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs146986556	chr9:140977441-140977442	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs116161238	chr9:140977444-140977445	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs189611075	chr9:140977476-140977477	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs62580951	chr9:140977491-140977492	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:19)

Disease	PMID	Source
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Mantle cell lymphoma	19029149	CNVD

Chromatin state (count:158 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140933000-140976400	Weak transcription	Right Atrium	heart
2	chr9:140954200-140979000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:140963600-140978600	Weak transcription	Fetal Brain Male	brain
4	chr9:140968000-140977200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:140968200-140977400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:140968600-140980600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:140969200-140980000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:140970600-140977400	Strong transcription	Fetal Brain Female	brain
9	chr9:140973000-140977400	Weak transcription	Spleen	Spleen
10	chr9:140973200-140977400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:140973200-140977400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:140973800-140977600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:140973800-140980000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:140974600-140977200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:140975200-140976000	Strong transcription	Brain Angular Gyrus	brain
16	chr9:140975600-140977800	Strong transcription	Brain Anterior Caudate	brain
17	chr9:140975800-140977400	Weak transcription	Brain Germinal Matrix	brain
18	chr9:140976000-141000000	Weak transcription	Brain Angular Gyrus	brain
19	chr9:140977200-140977400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
20	chr9:140977200-140978000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:140977200-140978200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
22	chr9:140977400-140977800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
23	chr9:140977400-140977800	Strong transcription	Brain Germinal Matrix	brain
24	chr9:140977400-140978200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
25	chr9:140977400-140978400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
26	chr9:140977400-140978800	Strong transcription	Brain Cingulate Gyrus	brain
27	chr9:140977400-140979000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr9:140977400-140979000	ZNF genes & repeats	Spleen	Spleen
29	chr9:140977400-140979400	ZNF genes & repeats	Fetal Brain Female	brain
30	chr9:140977600-140978000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
31	chr9:140977800-140978400	ZNF genes & repeats	Brain Germinal Matrix	brain
32	chr9:140977800-140994200	Weak transcription	Brain Anterior Caudate	brain
33	chr9:140978000-140979000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:140978400-140979000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
35	chr9:140978800-140993800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr9:140979800-140981000	ZNF genes & repeats	Fetal Brain Female	brain
37	chr9:140979800-140981400	ZNF genes & repeats	Brain Germinal Matrix	brain
38	chr9:140980000-140980400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr9:140981000-140990600	Weak transcription	Fetal Brain Female	brain
40	chr9:140981400-140991000	Weak transcription	Brain Germinal Matrix	brain
41	chr9:140985400-140986000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
42	chr9:140986000-140986800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr9:140986400-140986800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:140987000-140998200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:140988200-141044600	Weak transcription	Right Atrium	heart
46	chr9:140989600-140992400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr9:140989600-140993600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr9:140989600-141000000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr9:140990600-140991000	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr9:140990600-140991000	Enhancers	Monocytes-CD14+_RO01746	blood

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